Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46898 * 2 1 4 4 O 1.42898 * 109.46770 * 119.99168 * 2 1 3 5 5 C 1.42901 * 114.00480 * 270.00073 * 4 2 1 6 6 C 1.50697 * 109.47191 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.97433 * 89.99768 * 6 5 4 8 8 C 1.38205 * 120.02377 * 179.74187 * 7 6 5 9 9 C 1.38455 * 119.97496 * 0.26259 * 8 7 6 10 10 F 1.35097 * 120.02414 * 180.02562 * 9 8 7 11 11 C 1.38464 * 119.95049 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97214 * 0.02562 * 11 9 8 13 13 C 1.50699 * 109.47185 * 239.99556 * 2 1 3 14 14 O 1.21272 * 119.99905 * 244.99864 * 13 2 1 15 15 N 1.34777 * 119.99824 * 64.99763 * 13 2 1 16 16 C 1.46499 * 119.99737 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.47030 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.46767 * 65.00665 * 17 16 15 19 19 C 1.52999 * 109.47087 * 185.00066 * 17 16 15 20 20 O 1.42902 * 109.47075 * 54.99875 * 19 17 16 21 21 N 1.46494 * 109.47079 * 305.00381 * 17 16 15 22 22 C 1.36933 * 119.99998 * 155.00201 * 21 17 16 23 23 H 1.07998 * 120.00198 * 359.97438 * 22 21 17 24 24 C 1.38819 * 120.00116 * 179.97438 * 22 21 17 25 25 N 1.31613 * 119.99709 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99913 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47015 * 90.00065 * 26 24 22 28 28 H 1.48504 * 109.46971 * 210.00078 * 26 24 22 29 29 H 1.48495 * 109.47253 * 329.99702 * 26 24 22 30 30 H 1.09004 * 109.47118 * 60.00407 * 1 2 3 31 31 H 1.08994 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47221 * 300.00414 * 1 2 3 33 33 H 1.09002 * 109.46929 * 60.00194 * 5 4 2 34 34 H 1.08994 * 109.46774 * 300.00537 * 5 4 2 35 35 H 1.08002 * 119.99029 * 0.02809 * 7 6 5 36 36 H 1.08004 * 120.00758 * 180.27782 * 8 7 6 37 37 H 1.07993 * 120.01407 * 180.02562 * 11 9 8 38 38 H 1.07996 * 119.98812 * 180.02562 * 12 11 9 39 39 H 0.97001 * 119.99962 * 0.02562 * 15 13 2 40 40 H 1.09001 * 109.47495 * 300.00541 * 16 15 13 41 41 H 1.09001 * 109.47157 * 60.00644 * 16 15 13 42 42 H 1.08996 * 109.47280 * 174.99987 * 19 17 16 43 43 H 1.08996 * 109.47389 * 295.00413 * 19 17 16 44 44 H 0.96701 * 114.00561 * 179.97438 * 20 19 17 45 45 H 0.97000 * 120.00157 * 334.99386 * 21 17 16 46 46 H 0.97005 * 119.99785 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1832 2.2941 6 6 2.7013 -0.6279 3.4611 7 6 4.0599 -0.7997 3.6500 8 6 4.5209 -1.5389 4.7230 9 6 3.6213 -2.1119 5.6057 10 9 4.0708 -2.8342 6.6552 11 6 2.2606 -1.9433 5.4128 12 6 1.8019 -1.2037 4.3392 13 6 2.0324 -0.7105 -1.2304 14 8 2.6530 -1.7467 -1.1213 15 7 1.7919 -0.1943 -2.4520 16 6 2.2807 -0.8848 -3.6480 17 6 1.8764 -0.0944 -4.8942 18 1 2.3820 0.8712 -4.8918 19 6 2.2770 -0.8767 -6.1465 20 8 1.7075 -2.1863 -6.0926 21 7 0.4263 0.1135 -4.8913 22 6 -0.1146 1.1744 -5.5673 23 1 0.5278 1.8581 -6.1023 24 6 -1.4888 1.3711 -5.5650 25 7 -2.2718 0.5377 -4.9135 26 14 -2.2267 2.8180 -6.4879 27 1 -2.5374 2.4098 -7.8814 28 1 -3.4740 3.2534 -5.8097 29 1 -1.2553 3.9410 -6.5059 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2537 0.6549 2.5588 34 1 2.9318 0.9515 2.0450 35 1 4.7615 -0.3523 2.9615 36 1 5.5825 -1.6692 4.8728 37 1 1.5580 -2.3894 6.1009 38 1 0.7407 -1.0716 4.1886 39 1 1.2958 0.6346 -2.5391 40 1 3.3671 -0.9626 -3.6042 41 1 1.8465 -1.8835 -3.6941 42 1 1.9107 -0.3574 -7.0320 43 1 3.3631 -0.9547 -6.1943 44 1 1.9202 -2.7395 -6.8566 45 1 -0.1508 -0.5004 -4.4106 46 1 -3.2321 0.6749 -4.9122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700805024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = -163.736064 kcal Electronic energy + Delta-G solvation = -28856.687996 eV Core-core repulsion = 24467.332209 eV Total energy + Delta-G solvation = -4389.355787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.94324 -41.03863 -40.18494 -38.83352 -38.18603 -36.36206 -35.19624 -33.60092 -32.87989 -32.12810 -31.55603 -29.94062 -27.09696 -26.75522 -25.62962 -24.52108 -24.04394 -22.48861 -21.62305 -21.18183 -19.43824 -18.73395 -18.32193 -18.18350 -18.03838 -17.49465 -16.90993 -16.83481 -16.61983 -16.44755 -16.14544 -15.80380 -15.52807 -15.23224 -15.08526 -14.85690 -14.60717 -14.49795 -14.35189 -14.18435 -14.00108 -13.65672 -13.35342 -13.25833 -13.12814 -13.01591 -12.71828 -12.65259 -12.56101 -12.22327 -12.08583 -11.98029 -11.86079 -11.70001 -11.04177 -10.93204 -10.70973 -10.46364 -10.08616 -9.99736 -9.68452 -8.97545 -7.86778 -5.15836 0.01652 0.25851 1.52197 1.53615 1.61067 1.61493 1.93837 2.52472 2.60374 3.12223 3.25063 3.45270 3.62974 3.69980 3.72270 3.85009 3.92866 3.95205 3.99552 4.05799 4.09374 4.20307 4.27391 4.46743 4.48208 4.58521 4.59959 4.62956 4.72853 4.80259 4.90362 4.95501 4.97483 5.01813 5.11925 5.21694 5.24057 5.25466 5.50730 5.51134 5.58985 5.87568 6.08377 6.31690 6.62972 7.07582 7.27293 7.40273 8.12190 8.38037 9.35703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002084 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.681287 B =13431.257240 C =14533.480668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.120 0.880 4 O -0.378 6.378 5 C 0.094 3.906 6 C -0.110 4.110 7 C -0.075 4.075 8 C -0.162 4.162 9 C 0.083 3.917 10 F -0.148 7.148 11 C -0.161 4.161 12 C -0.073 4.073 13 C 0.506 3.494 14 O -0.578 6.578 15 N -0.705 5.705 16 C 0.130 3.870 17 C 0.162 3.838 18 H 0.083 0.917 19 C 0.063 3.937 20 O -0.585 6.585 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.082 0.918 24 C -0.070 4.070 25 N -0.964 5.964 26 Si 0.966 3.034 27 H -0.297 1.297 28 H -0.301 1.301 29 H -0.266 1.266 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.412 0.588 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.385 0.615 45 H 0.373 0.627 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 2.042 16.237 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.297 6.297 5 C 0.019 3.981 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.181 4.181 9 C 0.064 3.936 10 F -0.127 7.127 11 C -0.180 4.180 12 C -0.091 4.091 13 C 0.293 3.707 14 O -0.458 6.458 15 N -0.358 5.358 16 C 0.006 3.994 17 C 0.053 3.947 18 H 0.101 0.899 19 C -0.018 4.018 20 O -0.391 6.391 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.615 5.615 26 Si 0.797 3.203 27 H -0.225 1.225 28 H -0.228 1.228 29 H -0.190 1.190 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.249 0.751 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.233 0.767 45 H 0.205 0.795 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.421 1.493 16.829 20.969 hybrid contribution -0.897 0.287 -0.990 1.366 sum 11.525 1.779 15.838 19.668 Atomic orbital electron populations 1.22191 0.92567 1.02955 1.04546 1.21885 0.95515 0.96925 0.83718 0.86261 1.88096 1.86775 1.35455 1.19419 1.21639 1.01666 0.91474 0.83371 1.19866 0.93908 1.00819 0.96466 1.21193 0.95489 0.96413 0.96191 1.21359 1.00953 1.00163 0.95596 1.18032 0.93527 0.95395 0.86664 1.91478 1.90015 1.75752 1.55429 1.21378 0.93859 1.02093 1.00675 1.21214 1.01065 0.94255 0.92570 1.20994 0.79145 0.85159 0.85442 1.90659 1.42495 1.25304 1.87313 1.45883 1.56851 1.28134 1.04919 1.21364 0.98629 0.95742 0.83693 1.20848 0.85783 0.96515 0.91573 0.89936 1.22904 0.96214 0.83605 0.99066 1.86528 1.77989 1.26048 1.48581 1.42472 1.01270 1.31111 1.61254 1.19595 0.90614 1.02800 1.23595 0.90059 1.25449 0.96908 1.01469 1.02432 1.69836 1.03259 1.39989 1.48389 0.85249 0.77730 0.79863 0.77485 1.22515 1.22766 1.19020 0.90853 0.93296 0.88533 0.89741 0.90282 0.83526 0.83115 0.82984 0.83064 0.75063 0.90555 0.93485 0.94445 0.91737 0.76725 0.79548 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.48 71.98 0.68 -3.28 16 2 C 0.08 2.00 3.13 29.85 0.09 2.10 16 3 H 0.12 2.11 7.79 -2.39 -0.02 2.09 16 4 O -0.38 -10.00 9.51 -129.99 -1.24 -11.24 16 5 C 0.09 1.63 5.87 71.23 0.42 2.05 16 6 C -0.11 -2.05 5.51 -19.86 -0.11 -2.16 16 7 C -0.07 -1.33 9.70 22.26 0.22 -1.12 16 8 C -0.16 -2.87 10.03 22.31 0.22 -2.65 16 9 C 0.08 1.61 7.30 22.38 0.16 1.78 16 10 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 11 C -0.16 -2.79 10.03 22.31 0.22 -2.57 16 12 C -0.07 -1.25 9.70 22.26 0.22 -1.03 16 13 C 0.51 17.00 7.18 87.66 0.63 17.63 16 14 O -0.58 -24.40 16.51 15.98 0.26 -24.14 16 15 N -0.71 -22.86 5.35 -463.06 -2.48 -25.34 16 16 C 0.13 4.48 5.12 86.38 0.44 4.92 16 17 C 0.16 5.72 2.84 44.99 0.13 5.84 16 18 H 0.08 2.65 8.08 -2.38 -0.02 2.63 16 19 C 0.06 2.00 6.86 71.98 0.49 2.50 16 20 O -0.58 -20.09 12.64 -148.98 -1.88 -21.97 16 21 N -0.72 -32.79 4.51 -322.94 -1.46 -34.25 16 22 C -0.23 -11.67 9.93 84.04 0.83 -10.83 16 23 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 25 N -0.96 -55.97 13.06 21.65 0.28 -55.69 16 26 Si 0.97 43.27 29.55 68.60 2.03 45.30 16 27 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H 0.07 1.92 7.93 -2.38 -0.02 1.90 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 33 H 0.08 1.08 7.82 -2.39 -0.02 1.06 16 34 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.41 12.86 7.92 -92.71 -0.73 12.13 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.91 7.39 -2.39 -0.02 1.89 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.38 9.27 9.12 -74.06 -0.68 8.59 16 45 H 0.37 19.38 7.80 -92.71 -0.72 18.66 16 46 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -72.69 398.55 0.31 -72.38 By element: Atomic # 1 Polarization: 48.45 SS G_CDS: -1.11 Total: 47.34 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.12 Total: 9.92 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -3.65 Total: -115.28 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.85 Total: -57.34 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.69 0.31 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.361 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds