Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34769 * 120.00250 * 2 1 4 4 O 1.21289 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00331 * 359.97438 * 3 2 1 6 6 C 1.53005 * 117.49921 * 248.75235 * 5 3 2 7 7 C 1.52996 * 117.50233 * 180.08782 * 5 3 2 8 8 C 1.46505 * 119.99909 * 179.97438 * 2 1 3 9 9 C 1.52996 * 109.46998 * 60.00074 * 8 2 1 10 10 C 1.53000 * 109.47328 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47060 * 60.00126 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00256 * 205.00145 * 12 11 10 14 14 O 1.21283 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99922 * 180.02562 * 13 12 11 16 16 S 1.81009 * 109.46885 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99611 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00580 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99859 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46844 * 89.99657 * 21 19 17 23 23 H 1.48491 * 109.46762 * 209.99707 * 21 19 17 24 24 H 1.48500 * 109.46843 * 329.99958 * 21 19 17 25 25 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 26 26 C 1.52997 * 109.47164 * 59.99836 * 25 11 10 27 27 H 1.09001 * 109.47636 * 270.00400 * 1 2 3 28 28 H 1.09008 * 109.46827 * 30.00253 * 1 2 3 29 29 H 1.08998 * 109.47013 * 149.99774 * 1 2 3 30 30 H 1.09003 * 115.54825 * 34.40787 * 5 3 2 31 31 H 1.08995 * 117.49526 * 359.97438 * 6 5 3 32 32 H 1.08996 * 117.50238 * 145.01574 * 6 5 3 33 33 H 1.09008 * 117.49765 * 214.97511 * 7 5 3 34 34 H 1.08994 * 117.50356 * 359.97360 * 7 5 3 35 35 H 1.08992 * 109.47276 * 180.02562 * 8 2 1 36 36 H 1.09004 * 109.47368 * 60.00227 * 9 8 2 37 37 H 1.09001 * 109.47372 * 300.00383 * 9 8 2 38 38 H 1.09002 * 109.47398 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47194 * 300.00476 * 10 9 8 40 40 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 41 41 H 0.97005 * 119.99374 * 25.00210 * 12 11 10 42 42 H 1.08991 * 109.47241 * 299.99575 * 15 13 12 43 43 H 1.09000 * 109.47273 * 60.00364 * 15 13 12 44 44 H 0.96992 * 120.00221 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47002 * 299.99574 * 25 11 10 46 46 H 1.09000 * 109.47050 * 179.97438 * 25 11 10 47 47 H 1.09002 * 109.47045 * 180.02562 * 26 25 11 48 48 H 1.09001 * 109.47375 * 59.99966 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 1.4588 3.3297 -1.2657 7 6 2.2076 3.7626 -0.0026 8 6 2.1975 -1.2688 0.0006 9 6 1.8279 -2.0716 -1.2483 10 6 2.5923 -3.3969 -1.2475 11 6 2.2221 -4.1984 0.0021 12 7 2.9545 -5.4672 0.0033 13 6 2.4630 -6.5284 0.6731 14 8 1.4146 -6.4328 1.2754 15 6 3.2168 -7.8333 0.6748 16 16 2.3075 -9.0540 1.6544 17 6 3.3822 -10.4405 1.4894 18 1 4.2889 -10.3549 0.9090 19 6 3.0628 -11.6432 2.1044 20 7 1.9574 -11.7477 2.8113 21 14 4.2024 -13.1130 1.9300 22 1 5.1988 -13.1001 3.0311 23 1 3.4080 -14.3658 1.9960 24 1 4.9064 -13.0413 0.6245 25 6 2.5916 -3.3956 1.2510 26 6 1.8271 -2.0703 1.2501 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 0.4476 2.4739 0.5548 31 1 2.0523 2.9500 -2.0973 32 1 0.5694 3.8958 -1.5423 33 1 1.8104 4.6133 0.5512 34 1 3.2934 3.6676 -0.0031 35 1 3.2691 -1.0697 0.0009 36 1 2.0912 -1.5004 -2.1386 37 1 0.7562 -2.2707 -1.2483 38 1 2.3293 -3.9687 -2.1374 39 1 3.6641 -3.1982 -1.2472 40 1 1.1504 -4.3972 0.0020 41 1 3.7932 -5.5434 -0.4781 42 1 3.3218 -8.1936 -0.3485 43 1 4.2046 -7.6818 1.1099 44 1 1.7344 -12.5880 3.2414 45 1 3.6634 -3.1968 1.2513 46 1 2.3274 -3.9664 2.1412 47 1 2.0908 -1.4981 2.1397 48 1 0.7554 -2.2690 1.2499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701145575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -84.198480 kcal Electronic energy + Delta-G solvation = -26814.098988 eV Core-core repulsion = 22994.405386 eV Total energy + Delta-G solvation = -3819.693602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55675 -40.79403 -39.17975 -37.08801 -36.48430 -34.59710 -34.47479 -31.87901 -31.41808 -29.29598 -27.77940 -27.62882 -25.53692 -23.87509 -23.32973 -22.88069 -21.61595 -20.85327 -19.91047 -19.78502 -18.46711 -17.78881 -17.67671 -17.31427 -16.88126 -16.54226 -16.31690 -16.01384 -15.71878 -15.44209 -15.17732 -14.91317 -14.66201 -14.56685 -14.10229 -14.08813 -13.75450 -13.54476 -13.41486 -13.19177 -13.16665 -13.11441 -12.89462 -12.78316 -12.55498 -12.41947 -12.25442 -12.17391 -11.73019 -11.60085 -11.52478 -11.43824 -11.35455 -11.14542 -10.94832 -10.78341 -10.27815 -10.07740 -9.66223 -8.66473 -8.34963 -6.12793 1.27069 1.42146 1.43270 1.46944 1.57435 1.62762 1.91134 2.26201 2.31715 2.91721 2.99185 3.31987 3.46140 3.63423 3.68338 3.84592 3.90440 3.96883 3.98480 4.09633 4.15091 4.20137 4.28835 4.30365 4.37653 4.39609 4.42861 4.51435 4.64217 4.69923 4.70127 4.74157 4.87637 4.93219 5.00305 5.03435 5.03816 5.07721 5.09325 5.22339 5.28643 5.30153 5.41674 5.52718 5.57118 6.19570 6.36149 6.53451 7.06435 7.12805 7.26924 8.74247 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.042085 B = 0.001695 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.154956 B =16518.078402 C =16671.710806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.605 5.605 3 C 0.534 3.466 4 O -0.590 6.590 5 C -0.200 4.200 6 C -0.137 4.137 7 C -0.157 4.157 8 C 0.140 3.860 9 C -0.114 4.114 10 C -0.113 4.113 11 C 0.147 3.853 12 N -0.711 5.711 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.258 1.258 25 C -0.123 4.123 26 C -0.112 4.112 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.415 0.585 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.060 0.940 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 30.831 -11.566 32.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.335 5.335 3 C 0.324 3.676 4 O -0.471 6.471 5 C -0.221 4.221 6 C -0.174 4.174 7 C -0.195 4.195 8 C 0.037 3.963 9 C -0.152 4.152 10 C -0.152 4.152 11 C 0.043 3.957 12 N -0.364 5.364 13 C 0.321 3.679 14 O -0.441 6.441 15 C -0.283 4.283 16 S 0.077 5.923 17 C -0.696 4.696 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.163 4.163 26 C -0.151 4.151 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.968 30.886 -10.484 32.751 hybrid contribution 2.040 -1.424 -0.356 2.513 sum -0.927 29.462 -10.840 31.406 Atomic orbital electron populations 1.22085 0.77333 1.04993 1.03107 1.47903 1.08397 1.04898 1.72312 1.20348 0.86979 0.85799 0.74511 1.90666 1.16097 1.87941 1.52438 1.22304 1.03298 0.89123 1.07336 1.23031 1.03708 1.00380 0.90308 1.23018 0.98901 0.95921 1.01639 1.21072 0.97312 0.82666 0.95244 1.21745 1.01549 0.94800 0.97142 1.21702 1.01754 0.95267 0.96447 1.21036 0.96812 0.82162 0.95733 1.45850 1.27007 1.10299 1.53220 1.20027 0.84784 0.85063 0.77979 1.90683 1.24732 1.84452 1.44260 1.23393 1.03397 0.95847 1.05615 1.85540 1.33857 1.06243 1.66621 1.23218 1.10220 0.97885 1.38256 0.89978 1.26119 0.97355 1.01780 0.93822 1.70177 1.25113 1.27512 1.31923 0.84959 0.77607 0.76167 0.79281 1.19379 1.20228 1.18219 1.21820 1.00946 0.95552 0.97935 1.21707 1.01128 0.94730 0.97572 0.91677 0.88637 0.89731 0.83285 0.89482 0.84882 0.85703 0.89949 0.90108 0.90424 0.90060 0.89494 0.90078 0.91030 0.74777 0.87216 0.87456 0.91985 0.91049 0.93526 0.92128 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.06 127.77 1.16 1.68 16 2 N -0.60 -9.04 2.76 -822.59 -2.27 -11.31 16 3 C 0.53 10.12 7.46 87.66 0.65 10.77 16 4 O -0.59 -16.51 15.59 -3.06 -0.05 -16.56 16 5 C -0.20 -2.26 4.79 -11.54 -0.06 -2.32 16 6 C -0.14 -1.15 10.24 30.62 0.31 -0.83 16 7 C -0.16 -1.77 10.05 30.62 0.31 -1.47 16 8 C 0.14 2.37 2.52 44.99 0.11 2.49 16 9 C -0.11 -1.51 5.18 30.59 0.16 -1.35 16 10 C -0.11 -1.63 5.39 30.59 0.16 -1.46 16 11 C 0.15 3.16 2.45 44.99 0.11 3.27 16 12 N -0.71 -17.52 5.08 -442.53 -2.25 -19.77 16 13 C 0.54 19.49 7.81 87.66 0.68 20.18 16 14 O -0.56 -25.67 15.53 -3.04 -0.05 -25.72 16 15 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 16 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 17 C -0.55 -31.41 9.50 67.96 0.65 -30.76 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 21 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.12 -2.73 5.49 30.60 0.17 -2.57 16 26 C -0.11 -2.07 5.20 30.59 0.16 -1.92 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.36 6.64 -2.38 -0.02 0.35 16 29 H 0.08 0.56 6.43 -2.39 -0.02 0.54 16 30 H 0.15 0.90 7.27 -2.39 -0.02 0.88 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 1.36 7.67 -2.39 -0.02 1.35 16 35 H 0.08 1.76 6.90 -2.39 -0.02 1.75 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.94 6.66 -2.39 -0.02 0.92 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 41 H 0.42 7.44 8.60 -92.70 -0.80 6.64 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 Total: -1.00 -82.55 399.66 2.19 -80.36 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.16 Total: 20.28 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.49 Total: -7.77 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -4.23 Total: -86.83 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.09 Total: -42.27 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -82.55 2.19 -80.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701145575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.835 kcal (2) G-P(sol) polarization free energy of solvation -82.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds