Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47577 * 2 1 4 4 C 1.34772 * 120.00372 * 270.00005 * 3 2 1 5 5 O 1.21278 * 120.00838 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.99737 * 359.97438 * 4 3 2 7 7 S 1.80993 * 109.47445 * 180.02562 * 6 4 3 8 8 C 1.76200 * 100.00275 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.38800 * 120.00136 * 180.02562 * 8 7 6 11 11 N 1.31626 * 120.00101 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00155 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46875 * 90.00224 * 12 10 8 14 14 H 1.48494 * 109.47534 * 210.00845 * 12 10 8 15 15 H 1.48507 * 109.47018 * 330.00808 * 12 10 8 16 16 C 1.46504 * 120.00245 * 89.99723 * 3 2 1 17 17 H 1.08999 * 109.47480 * 179.97438 * 16 3 2 18 18 C 1.53001 * 109.47070 * 59.99811 * 16 3 2 19 19 C 1.52999 * 109.47191 * 300.00264 * 16 3 2 20 20 N 1.46506 * 109.47038 * 305.00201 * 19 16 3 21 21 C 1.34771 * 120.00118 * 180.02562 * 20 19 16 22 22 O 1.21290 * 119.99954 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00134 * 179.97438 * 21 20 19 24 24 C 1.54637 * 111.03769 * 179.97438 * 23 21 20 25 25 C 1.51103 * 104.72289 * 93.40056 * 24 23 21 26 26 C 1.30521 * 111.10533 * 16.43786 * 25 24 23 27 27 C 1.51107 * 111.10409 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47222 * 300.00671 * 1 2 3 29 29 H 1.09001 * 109.47186 * 60.00067 * 1 2 3 30 30 H 1.08998 * 109.47659 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47222 * 239.99329 * 2 1 3 32 32 H 1.09003 * 109.46529 * 120.00287 * 2 1 3 33 33 H 1.09005 * 109.47257 * 300.00584 * 6 4 3 34 34 H 1.09000 * 109.47360 * 59.99660 * 6 4 3 35 35 H 0.97001 * 120.00292 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47025 * 179.97438 * 18 16 3 37 37 H 1.08996 * 109.47365 * 300.00847 * 18 16 3 38 38 H 1.09001 * 109.46515 * 60.00464 * 18 16 3 39 39 H 1.08995 * 109.47334 * 185.00102 * 19 16 3 40 40 H 1.09003 * 109.47171 * 64.99750 * 19 16 3 41 41 H 0.96995 * 120.00009 * 359.97438 * 20 19 16 42 42 H 1.08998 * 110.94104 * 56.01594 * 23 21 20 43 43 H 1.08997 * 110.38971 * 212.21272 * 24 23 21 44 44 H 1.09004 * 110.38871 * 334.59392 * 24 23 21 45 45 H 1.08001 * 124.44506 * 196.41222 * 25 24 23 46 46 H 1.07998 * 124.44978 * 180.02562 * 26 25 24 47 47 H 1.08996 * 110.38038 * 224.74997 * 27 26 25 48 48 H 1.09001 * 110.48291 * 102.42232 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1671 5 8 2.6470 3.1600 -1.1672 6 6 1.9924 1.3059 -2.4723 7 16 2.3851 2.4145 -3.8480 8 6 2.0115 1.3586 -5.2082 9 1 1.6564 0.3542 -5.0304 10 6 2.1746 1.8171 -6.5080 11 7 1.8951 1.0285 -7.5241 12 14 2.7896 3.5540 -6.8155 13 1 4.2724 3.5470 -6.8962 14 1 2.2266 4.0596 -8.0932 15 1 2.3587 4.4362 -5.7013 16 6 2.2626 2.0718 1.2687 17 1 2.6203 3.0819 1.0696 18 6 3.3170 1.3068 2.0711 19 6 0.9616 2.1398 2.0710 20 7 -0.0824 2.7664 1.2562 21 6 -1.3211 2.9337 1.7603 22 8 -1.5717 2.5650 2.8883 23 6 -2.3948 3.5787 0.9224 24 6 -3.7285 3.6659 1.7001 25 6 -3.7116 5.0350 2.3391 26 6 -2.8154 5.8028 1.7817 27 6 -2.0845 5.0736 0.6783 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.6228 0.4185 -2.5298 34 1 0.9445 1.0113 -2.5302 35 1 2.0087 1.3491 -8.4326 36 1 3.4990 1.8209 3.0148 37 1 2.9598 0.2965 2.2702 38 1 4.2439 1.2584 1.4995 39 1 1.1215 2.7300 2.9733 40 1 0.6514 1.1318 2.3465 41 1 0.1181 3.0616 0.3543 42 1 -2.5258 3.0467 -0.0199 43 1 -4.5730 3.5760 1.0170 44 1 -3.7735 2.8905 2.4649 45 1 -4.3568 5.3386 3.1503 46 1 -2.6210 6.8249 2.0715 47 1 -1.0122 5.2558 0.7483 48 1 -2.4588 5.3841 -0.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702031038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -56.798801 kcal Electronic energy + Delta-G solvation = -28283.553639 eV Core-core repulsion = 24465.048176 eV Total energy + Delta-G solvation = -3818.505463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71333 -39.88337 -37.74298 -36.67944 -34.54059 -32.76013 -32.48528 -30.24783 -29.81188 -28.81524 -28.36730 -26.49143 -25.66117 -23.58292 -22.67279 -21.75469 -19.91342 -19.14777 -18.95204 -17.83778 -17.45043 -17.20447 -16.67176 -16.19469 -15.70947 -15.33577 -15.20112 -14.99037 -14.42878 -14.16769 -13.84964 -13.60288 -13.43269 -13.26622 -13.06333 -12.88186 -12.81166 -12.67875 -12.53829 -12.35249 -12.18077 -12.13937 -11.78778 -11.71948 -11.49955 -11.33904 -11.31216 -11.10772 -11.04227 -11.01007 -10.63333 -9.97997 -9.90468 -9.58328 -9.23258 -9.06640 -9.05067 -8.78275 -8.55020 -6.97718 -6.33378 -4.05751 2.08432 2.50864 2.59534 2.79284 2.97700 3.14158 3.29142 3.45491 3.53478 4.27298 4.28039 4.37548 4.40825 4.55258 4.63654 4.77336 4.84278 4.96472 5.02847 5.05492 5.06048 5.09954 5.17328 5.23393 5.31542 5.37132 5.37747 5.44609 5.47090 5.53212 5.63649 5.68099 5.68528 5.72339 5.76723 5.82154 5.88311 5.90540 5.94002 6.16728 6.24674 6.32951 6.52006 6.68170 7.31793 7.35861 7.89536 8.08653 8.30759 8.37132 9.12714 10.75845 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003343 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.689949 B = 8373.982134 C = 9757.436932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 N -0.613 5.613 4 C 0.532 3.468 5 O -0.518 6.518 6 C -0.122 4.122 7 S -0.142 6.142 8 C -0.521 4.521 9 H 0.088 0.912 10 C 0.096 3.904 11 N -0.880 5.880 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.235 1.235 16 C 0.124 3.876 17 H 0.109 0.891 18 C -0.158 4.158 19 C 0.111 3.889 20 N -0.722 5.722 21 C 0.526 3.474 22 O -0.542 6.542 23 C -0.121 4.121 24 C -0.087 4.087 25 C -0.156 4.156 26 C -0.174 4.174 27 C -0.090 4.090 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.405 0.595 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.075 0.925 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 1.675 20.731 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 N -0.349 5.349 4 C 0.320 3.680 5 O -0.393 6.393 6 C -0.272 4.272 7 S 0.084 5.916 8 C -0.669 4.669 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.516 5.516 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.159 1.159 16 C 0.020 3.980 17 H 0.127 0.873 18 C -0.216 4.216 19 C -0.014 4.014 20 N -0.374 5.374 21 C 0.313 3.687 22 O -0.419 6.419 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.174 4.174 26 C -0.192 4.192 27 C -0.127 4.127 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.241 0.759 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.094 0.906 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.768 3.057 21.336 22.313 hybrid contribution -0.109 -0.689 -0.904 1.142 sum -5.877 2.368 20.432 21.392 Atomic orbital electron populations 1.22423 0.95829 1.02468 1.03130 1.21550 0.94568 0.82324 1.03460 1.48068 1.67293 1.14473 1.05048 1.20384 0.76379 0.86528 0.84733 1.90701 1.44245 1.17531 1.86781 1.23345 1.05412 1.03366 0.95102 1.84778 1.88169 1.21130 0.97530 1.22294 1.51801 1.01930 0.90870 0.89419 1.24709 0.93759 0.97902 0.94884 1.69933 1.46498 1.36271 0.98912 0.86743 0.80284 0.85020 0.79833 1.19228 1.19937 1.15948 1.21291 0.94032 0.99085 0.83631 0.87341 1.22058 0.98785 1.00607 1.00183 1.21773 0.86819 0.98817 0.93985 1.45965 1.10327 1.62206 1.18893 1.20357 0.82995 0.78164 0.87216 1.90669 1.81375 1.50537 1.19298 1.22198 0.94822 0.97384 0.99808 1.21289 0.95156 0.96836 0.99117 1.23231 0.99150 0.95697 0.99341 1.23220 0.98418 0.99719 0.97847 1.21343 1.01082 0.91364 0.98950 0.91559 0.92112 0.91658 0.89781 0.90320 0.88574 0.88475 0.91907 0.91157 0.91946 0.91382 0.90662 0.90903 0.75940 0.87402 0.90005 0.89393 0.85825 0.85757 0.90648 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.65 37.16 0.36 -1.34 16 2 C 0.10 0.98 5.38 -4.05 -0.02 0.96 16 3 N -0.61 -7.07 1.88 -166.11 -0.31 -7.38 16 4 C 0.53 8.50 7.40 -10.99 -0.08 8.42 16 5 O -0.52 -9.98 15.19 5.56 0.08 -9.89 16 6 C -0.12 -2.20 4.71 36.01 0.17 -2.03 16 7 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 8 C -0.52 -14.52 10.04 30.94 0.31 -14.20 16 9 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 10 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 11 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 12 Si 0.86 21.22 27.74 -169.99 -4.71 16.51 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 16 C 0.12 1.24 2.80 -67.93 -0.19 1.05 16 17 H 0.11 1.30 6.90 -51.93 -0.36 0.94 16 18 C -0.16 -1.25 9.17 37.16 0.34 -0.91 16 19 C 0.11 1.08 4.30 -4.04 -0.02 1.06 16 20 N -0.72 -7.73 3.93 -60.29 -0.24 -7.97 16 21 C 0.53 6.23 6.82 -10.99 -0.07 6.15 16 22 O -0.54 -7.99 15.53 5.55 0.09 -7.91 16 23 C -0.12 -1.21 3.55 -90.06 -0.32 -1.53 16 24 C -0.09 -0.84 6.15 -26.83 -0.17 -1.00 16 25 C -0.16 -1.50 10.77 -35.69 -0.38 -1.88 16 26 C -0.17 -1.66 10.78 -35.69 -0.38 -2.05 16 27 C -0.09 -0.87 6.35 -26.84 -0.17 -1.04 16 28 H 0.07 0.66 4.50 -51.93 -0.23 0.43 16 29 H 0.06 0.65 7.22 -51.93 -0.38 0.28 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.08 0.59 6.43 -51.93 -0.33 0.26 16 33 H 0.10 1.65 7.40 -51.91 -0.38 1.27 16 34 H 0.10 1.64 7.19 -51.92 -0.37 1.27 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.70 6.62 -51.93 -0.34 0.36 16 41 H 0.41 4.59 7.87 -40.82 -0.32 4.26 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.96 7.01 -51.93 -0.36 0.60 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -33.33 392.66 -8.68 -42.01 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.56 Total: 5.06 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.73 Total: -5.69 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.23 Total: -40.58 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.33 -8.68 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702031038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.791 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds