Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.52999 * 109.47136 * 239.99907 * 2 1 3 5 5 N 1.46508 * 109.47012 * 184.99682 * 4 2 1 6 6 C 1.34777 * 119.99919 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00127 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99719 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47036 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00181 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00231 * 179.97438 * 10 9 8 13 13 N 1.31636 * 119.99824 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00335 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46976 * 59.99979 * 14 12 10 16 16 H 1.48493 * 109.47208 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46996 * 300.00136 * 14 12 10 18 18 N 1.46504 * 109.47151 * 119.99476 * 2 1 3 19 19 C 1.34770 * 120.00451 * 275.00518 * 18 2 1 20 20 O 1.21280 * 119.99946 * 359.97438 * 19 18 2 21 21 C 1.50698 * 120.00117 * 180.02562 * 19 18 2 22 22 C 1.52996 * 110.67055 * 303.23140 * 21 19 18 23 23 C 1.54891 * 110.75532 * 179.97438 * 21 19 18 24 24 C 1.54266 * 104.31343 * 279.37509 * 23 21 19 25 25 H 1.08993 * 117.41578 * 116.43246 * 24 23 21 26 26 C 1.55334 * 118.38609 * 273.02319 * 24 23 21 27 27 C 1.53003 * 59.96331 * 93.10346 * 26 24 23 28 28 H 1.08993 * 119.29985 * 111.73122 * 27 26 24 29 29 C 1.54265 * 118.19621 * 265.87807 * 27 26 24 30 30 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47031 * 299.99531 * 1 2 3 32 32 H 1.09000 * 109.47352 * 60.00533 * 1 2 3 33 33 H 1.08997 * 109.47035 * 304.99529 * 4 2 1 34 34 H 1.09001 * 109.47216 * 65.00152 * 4 2 1 35 35 H 0.97001 * 119.99645 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47770 * 300.00032 * 8 6 5 37 37 H 1.09006 * 109.47261 * 60.00600 * 8 6 5 38 38 H 0.97004 * 119.99794 * 179.97438 * 13 12 10 39 39 H 0.97008 * 119.99569 * 95.00436 * 18 2 1 40 40 H 1.09003 * 109.47026 * 296.76652 * 22 21 19 41 41 H 1.09000 * 109.47435 * 56.76604 * 22 21 19 42 42 H 1.09004 * 109.46976 * 176.76864 * 22 21 19 43 43 H 1.09002 * 110.48740 * 38.12006 * 23 21 19 44 44 H 1.08998 * 110.48604 * 160.62891 * 23 21 19 45 45 H 1.08996 * 118.00343 * 345.89481 * 26 24 23 46 46 H 1.09003 * 117.16225 * 200.67990 * 26 24 23 47 47 H 1.08996 * 110.48733 * 330.31856 * 29 27 26 48 48 H 1.09001 * 110.48197 * 207.67517 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1731 -1.4291 -2.1907 7 8 3.5700 -1.8842 -3.1394 8 6 5.6749 -1.5377 -2.1300 9 16 6.2783 -2.3908 -3.6079 10 6 8.0099 -2.3791 -3.2824 11 1 8.3860 -1.9272 -2.3765 12 6 8.8905 -2.9517 -4.1897 13 7 8.4320 -3.5030 -5.2936 14 14 10.7263 -2.9400 -3.8443 15 1 10.9961 -3.6645 -2.5764 16 1 11.4441 -3.6083 -4.9593 17 1 11.1982 -1.5372 -3.7227 18 7 2.0183 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8589 1.1586 2.4115 21 6 2.6499 -0.7284 3.5875 22 6 1.7704 -1.9380 3.9103 23 6 2.7142 0.2415 4.7934 24 6 4.0320 1.0171 4.5892 25 1 3.9612 2.0920 4.4237 26 6 5.3435 0.4066 5.1550 27 6 4.9309 0.1279 3.7082 28 1 5.5221 0.5480 2.8946 29 6 4.1284 -1.1562 3.4136 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.9824 -0.4627 -0.4315 36 1 6.1099 -0.5392 -2.0842 37 1 5.9630 -2.1006 -1.2421 38 1 9.0475 -3.9028 -5.9278 39 1 2.2491 -1.6317 1.1527 40 1 0.7606 -1.6008 4.1443 41 1 1.7401 -2.6054 3.0490 42 1 2.1838 -2.4694 4.7675 43 1 1.8641 0.9236 4.7802 44 1 2.7406 -0.3155 5.7300 45 1 5.2603 -0.4134 5.8682 46 1 6.1797 1.0869 5.3170 47 1 4.3855 -1.9389 4.1272 48 1 4.3102 -1.4940 2.3933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704008443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = -62.036233 kcal Electronic energy + Delta-G solvation = -27574.264320 eV Core-core repulsion = 23755.531745 eV Total energy + Delta-G solvation = -3818.732575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12494 -39.42078 -38.55054 -36.40714 -34.14037 -33.48798 -32.44699 -31.17298 -29.40541 -28.58392 -27.40284 -26.05449 -25.40760 -23.83959 -21.80501 -21.23014 -20.38768 -20.04116 -19.79434 -17.92701 -17.26389 -16.77028 -16.31840 -16.23367 -15.72964 -15.25641 -15.10066 -14.82115 -14.59608 -14.11362 -13.93382 -13.71225 -13.45896 -13.19985 -13.14002 -13.04222 -12.94098 -12.76150 -12.65011 -12.53089 -12.20985 -12.03955 -11.83076 -11.64553 -11.31876 -11.14524 -11.06782 -11.05644 -11.05216 -10.78581 -10.33029 -10.12963 -9.85063 -9.75457 -9.51191 -9.37417 -9.08665 -8.97950 -8.27016 -6.52597 -6.23548 -3.94489 2.38243 2.77958 2.99981 3.04807 3.22140 3.26232 3.27509 3.29583 3.67255 4.09463 4.18623 4.20848 4.26766 4.39160 4.60533 4.74411 4.81090 4.84387 4.96296 4.97680 5.03378 5.10604 5.11614 5.11866 5.23794 5.32406 5.37443 5.39153 5.42336 5.49598 5.50510 5.55240 5.62772 5.67248 5.73675 5.78278 5.84751 5.85211 5.90059 5.95356 6.02885 6.10083 6.19062 6.51409 7.20424 7.57230 7.61960 7.96863 8.33014 8.54154 9.21732 10.83797 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.002730 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.030944 B =10254.009634 C =12143.072001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.726 5.726 19 C 0.534 3.466 20 O -0.533 6.533 21 C -0.088 4.088 22 C -0.138 4.138 23 C -0.071 4.071 24 C -0.158 4.158 25 H 0.112 0.888 26 C -0.153 4.153 27 C -0.169 4.169 28 H 0.109 0.891 29 C -0.083 4.083 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 5.931 22.049 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.379 5.379 19 C 0.320 3.680 20 O -0.408 6.408 21 C -0.091 4.091 22 C -0.196 4.196 23 C -0.109 4.109 24 C -0.176 4.176 25 H 0.130 0.870 26 C -0.190 4.190 27 C -0.187 4.187 28 H 0.127 0.873 29 C -0.120 4.120 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.239 5.931 20.286 26.056 hybrid contribution 2.282 0.302 1.516 2.756 sum -12.957 6.233 21.802 26.116 Atomic orbital electron populations 1.22096 0.94090 1.02634 1.03026 1.21236 0.94911 0.97837 0.83347 0.88719 1.21614 0.81148 1.01293 0.97100 1.45998 1.06790 1.62037 1.24639 1.20322 0.89527 0.76738 0.81607 1.90710 1.69856 1.45989 1.32420 1.23529 0.93497 1.05698 1.07694 1.85389 1.04601 1.73028 1.20191 1.22825 0.91555 1.44447 1.09680 0.90985 1.24988 0.99582 0.94504 0.94440 1.70009 1.35543 1.35387 1.09354 0.86230 0.82764 0.78503 0.78052 1.19913 1.20794 1.19923 1.46130 1.67866 1.14339 1.09590 1.20260 0.76678 0.86982 0.84067 1.90685 1.49516 1.15823 1.84824 1.21973 0.96650 0.96510 0.93935 1.21787 0.99453 0.95845 1.02488 1.21824 0.96957 0.96521 0.95576 1.23578 0.89938 0.98667 1.05463 0.87043 1.23417 0.97377 1.02646 0.95511 1.23253 1.03186 0.97661 0.94642 0.87267 1.22043 0.90758 0.96500 1.02738 0.92037 0.91664 0.91106 0.90936 0.89995 0.76774 0.89271 0.89279 0.92106 0.76302 0.91860 0.91888 0.91160 0.90048 0.90788 0.88925 0.88459 0.90026 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.13 1.14 2.73 -67.93 -0.19 0.95 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16 5 N -0.74 -9.19 5.39 -60.29 -0.32 -9.52 16 6 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16 7 O -0.52 -11.27 15.86 5.56 0.09 -11.19 16 8 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 14 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 N -0.73 -5.76 4.31 -53.80 -0.23 -5.99 16 19 C 0.53 5.06 6.22 -10.99 -0.07 4.99 16 20 O -0.53 -6.89 15.20 5.56 0.08 -6.81 16 21 C -0.09 -0.65 0.78 -153.67 -0.12 -0.76 16 22 C -0.14 -0.76 8.53 37.16 0.32 -0.45 16 23 C -0.07 -0.56 5.26 -25.07 -0.13 -0.69 16 24 C -0.16 -1.37 6.67 -88.15 -0.59 -1.96 16 25 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.15 -1.14 10.20 -25.49 -0.26 -1.40 16 27 C -0.17 -1.44 6.69 -89.38 -0.60 -2.04 16 28 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 29 C -0.08 -0.60 5.55 -25.07 -0.14 -0.74 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.20 8.14 -40.82 -0.33 3.87 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 37 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.40 2.70 7.87 -40.82 -0.32 2.38 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.31 7.40 -51.93 -0.38 -0.08 16 42 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.08 0.75 7.46 -51.93 -0.39 0.36 16 44 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.52 8.01 -51.93 -0.42 0.10 16 48 H 0.08 0.55 7.97 -51.93 -0.41 0.13 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -34.84 406.14 -9.98 -44.82 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.10 Total: 3.44 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.11 Total: -8.05 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.18 Total: -40.76 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.84 -9.98 -44.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704008443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.220 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds