Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.52999 * 109.47136 * 239.99907 * 2 1 3 5 5 N 1.46508 * 109.47012 * 184.99682 * 4 2 1 6 6 C 1.34777 * 119.99919 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00127 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99719 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47036 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00181 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00231 * 179.97438 * 10 9 8 13 13 N 1.31636 * 119.99824 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00335 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46976 * 59.99979 * 14 12 10 16 16 H 1.48493 * 109.47208 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46996 * 300.00136 * 14 12 10 18 18 N 1.46504 * 109.47151 * 119.99476 * 2 1 3 19 19 C 1.34770 * 120.00451 * 275.00518 * 18 2 1 20 20 O 1.21280 * 119.99946 * 359.97438 * 19 18 2 21 21 C 1.50698 * 120.00117 * 180.02562 * 19 18 2 22 22 C 1.52996 * 110.67055 * 303.23140 * 21 19 18 23 23 C 1.54891 * 110.75532 * 179.97438 * 21 19 18 24 24 C 1.54266 * 104.31343 * 279.37509 * 23 21 19 25 25 H 1.08993 * 117.41578 * 116.43246 * 24 23 21 26 26 C 1.55334 * 118.38609 * 273.02319 * 24 23 21 27 27 C 1.53003 * 59.96331 * 93.10346 * 26 24 23 28 28 H 1.08993 * 119.29985 * 111.73122 * 27 26 24 29 29 C 1.54265 * 118.19621 * 265.87807 * 27 26 24 30 30 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47031 * 299.99531 * 1 2 3 32 32 H 1.09000 * 109.47352 * 60.00533 * 1 2 3 33 33 H 1.08997 * 109.47035 * 304.99529 * 4 2 1 34 34 H 1.09001 * 109.47216 * 65.00152 * 4 2 1 35 35 H 0.97001 * 119.99645 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47770 * 300.00032 * 8 6 5 37 37 H 1.09006 * 109.47261 * 60.00600 * 8 6 5 38 38 H 0.97004 * 119.99794 * 179.97438 * 13 12 10 39 39 H 0.97008 * 119.99569 * 95.00436 * 18 2 1 40 40 H 1.09003 * 109.47026 * 296.76652 * 22 21 19 41 41 H 1.09000 * 109.47435 * 56.76604 * 22 21 19 42 42 H 1.09004 * 109.46976 * 176.76864 * 22 21 19 43 43 H 1.09002 * 110.48740 * 38.12006 * 23 21 19 44 44 H 1.08998 * 110.48604 * 160.62891 * 23 21 19 45 45 H 1.08996 * 118.00343 * 345.89481 * 26 24 23 46 46 H 1.09003 * 117.16225 * 200.67990 * 26 24 23 47 47 H 1.08996 * 110.48733 * 330.31856 * 29 27 26 48 48 H 1.09001 * 110.48197 * 207.67517 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.1731 -1.4291 -2.1907 7 8 3.5700 -1.8842 -3.1394 8 6 5.6749 -1.5377 -2.1300 9 16 6.2783 -2.3908 -3.6079 10 6 8.0099 -2.3791 -3.2824 11 1 8.3860 -1.9272 -2.3765 12 6 8.8905 -2.9517 -4.1897 13 7 8.4320 -3.5030 -5.2936 14 14 10.7263 -2.9400 -3.8443 15 1 10.9961 -3.6645 -2.5764 16 1 11.4441 -3.6083 -4.9593 17 1 11.1982 -1.5372 -3.7227 18 7 2.0183 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8589 1.1586 2.4115 21 6 2.6499 -0.7284 3.5875 22 6 1.7704 -1.9380 3.9103 23 6 2.7142 0.2415 4.7934 24 6 4.0320 1.0171 4.5892 25 1 3.9612 2.0920 4.4237 26 6 5.3435 0.4066 5.1550 27 6 4.9309 0.1279 3.7082 28 1 5.5221 0.5480 2.8946 29 6 4.1284 -1.1562 3.4136 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.9824 -0.4627 -0.4315 36 1 6.1099 -0.5392 -2.0842 37 1 5.9630 -2.1006 -1.2421 38 1 9.0475 -3.9028 -5.9278 39 1 2.2491 -1.6317 1.1527 40 1 0.7606 -1.6008 4.1443 41 1 1.7401 -2.6054 3.0490 42 1 2.1838 -2.4694 4.7675 43 1 1.8641 0.9236 4.7802 44 1 2.7406 -0.3155 5.7300 45 1 5.2603 -0.4134 5.8682 46 1 6.1797 1.0869 5.3170 47 1 4.3855 -1.9389 4.1272 48 1 4.3102 -1.4940 2.3933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704008443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = -85.087964 kcal Electronic energy + Delta-G solvation = -27575.263918 eV Core-core repulsion = 23755.531745 eV Total energy + Delta-G solvation = -3819.732173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82920 -40.67176 -39.38622 -37.36549 -34.98795 -34.58161 -34.39919 -32.04327 -30.76485 -29.18378 -27.89752 -27.73541 -26.84807 -24.56395 -22.42802 -21.99350 -21.73963 -20.69064 -20.52681 -19.80927 -18.10581 -17.73595 -17.59490 -17.18449 -16.87326 -16.64004 -16.37444 -16.03168 -15.79515 -15.33887 -14.89317 -14.58837 -14.50305 -14.31518 -14.13062 -13.86798 -13.74495 -13.68923 -13.39944 -13.25870 -13.16689 -13.13695 -12.94672 -12.86324 -12.64805 -12.61520 -12.26965 -12.08774 -11.74243 -11.71102 -11.62403 -11.12663 -11.00020 -10.99058 -10.81206 -10.43876 -10.27966 -10.19776 -10.13764 -8.65922 -8.34362 -6.12157 1.26620 1.43914 1.46648 1.56153 1.59235 1.64701 2.07088 2.26533 2.30430 2.65692 2.99842 3.31819 3.51632 3.53711 3.60793 3.69420 3.94014 3.98701 4.04534 4.14148 4.24227 4.28952 4.29397 4.41482 4.44262 4.50417 4.50508 4.56857 4.69985 4.72781 4.75459 4.87104 4.91513 4.95289 4.98428 5.04106 5.13345 5.20191 5.22061 5.29512 5.33900 5.36981 5.39487 5.42005 5.48068 6.19824 6.41463 6.52098 7.07132 7.19246 7.25075 8.74477 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.002730 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.030944 B =10254.009634 C =12143.072001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.131 4.131 9 S -0.146 6.146 10 C -0.548 4.548 11 H 0.082 0.918 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 0.996 3.004 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.264 1.264 18 N -0.717 5.717 19 C 0.533 3.467 20 O -0.572 6.572 21 C -0.082 4.082 22 C -0.136 4.136 23 C -0.069 4.069 24 C -0.172 4.172 25 H 0.092 0.908 26 C -0.140 4.140 27 C -0.181 4.181 28 H 0.097 0.903 29 C -0.079 4.079 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.411 0.589 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 5.413 24.331 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.367 5.367 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.282 4.282 9 S 0.081 5.919 10 C -0.696 4.696 11 H 0.100 0.900 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.370 5.370 19 C 0.320 3.680 20 O -0.450 6.450 21 C -0.085 4.085 22 C -0.193 4.193 23 C -0.107 4.107 24 C -0.191 4.191 25 H 0.110 0.890 26 C -0.176 4.176 27 C -0.199 4.199 28 H 0.115 0.885 29 C -0.117 4.117 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.707 5.419 22.615 27.515 hybrid contribution 2.009 0.561 0.872 2.261 sum -12.698 5.980 23.487 27.361 Atomic orbital electron populations 1.22045 0.92904 1.03395 1.02946 1.21075 0.95653 0.96822 0.82758 0.90058 1.21731 0.79337 1.01867 0.97858 1.45725 1.07765 1.59891 1.23348 1.19988 0.88774 0.76967 0.82020 1.90704 1.70320 1.48374 1.34423 1.23374 0.94859 1.05594 1.04404 1.85539 1.05671 1.74935 1.25755 1.23175 0.91846 1.44465 1.10122 0.89995 1.26097 1.05092 0.93789 0.94011 1.70173 1.37455 1.36501 1.10586 0.85040 0.75875 0.79019 0.78303 1.18506 1.20422 1.18841 1.46058 1.67273 1.14661 1.09021 1.20683 0.75937 0.86547 0.84826 1.90676 1.51297 1.17601 1.85429 1.21955 0.97182 0.96866 0.92515 1.21809 0.98925 0.95035 1.03579 1.21817 0.95731 0.96414 0.96705 1.23561 0.90994 0.97898 1.06599 0.88967 1.23492 0.96451 1.02685 0.95016 1.23346 1.03346 0.98288 0.94926 0.88519 1.22069 0.90073 0.96180 1.03351 0.90841 0.92660 0.90286 0.90273 0.90325 0.75283 0.87777 0.87042 0.91983 0.75211 0.92102 0.90950 0.89576 0.91875 0.88938 0.87383 0.88202 0.88345 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.48 71.98 0.68 -1.44 16 2 C 0.14 2.25 2.73 44.99 0.12 2.38 16 3 H 0.08 1.58 7.58 -2.38 -0.02 1.56 16 4 C 0.12 2.22 5.23 86.38 0.45 2.67 16 5 N -0.71 -16.45 5.39 -463.05 -2.50 -18.95 16 6 C 0.54 18.61 7.85 87.66 0.69 19.29 16 7 O -0.56 -24.55 15.86 -3.03 -0.05 -24.60 16 8 C -0.13 -5.01 6.16 71.23 0.44 -4.57 16 9 S -0.15 -7.94 20.57 -56.49 -1.16 -9.11 16 10 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 11 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 12 C 0.02 0.85 5.49 84.86 0.47 1.31 16 13 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 14 Si 1.00 43.06 29.55 68.60 2.03 45.08 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 N -0.72 -10.10 4.31 -442.53 -1.91 -12.01 16 19 C 0.53 9.49 6.22 87.66 0.54 10.03 16 20 O -0.57 -14.76 15.20 -3.03 -0.05 -14.81 16 21 C -0.08 -1.06 0.78 -51.64 -0.04 -1.10 16 22 C -0.14 -1.13 8.53 71.98 0.61 -0.51 16 23 C -0.07 -1.01 5.26 31.67 0.17 -0.85 16 24 C -0.17 -2.88 6.67 -9.19 -0.06 -2.95 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 C -0.14 -1.85 10.20 31.40 0.32 -1.52 16 27 C -0.18 -2.84 6.69 -9.99 -0.07 -2.91 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 C -0.08 -0.96 5.55 31.67 0.18 -0.79 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 7.71 8.14 -92.71 -0.75 6.95 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 39 H 0.41 4.45 7.87 -92.70 -0.73 3.72 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.47 7.40 -2.39 -0.02 0.46 16 42 H 0.09 0.48 8.09 -2.38 -0.02 0.46 16 43 H 0.06 1.16 7.46 -2.39 -0.02 1.14 16 44 H 0.09 0.99 8.05 -2.39 -0.02 0.97 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 0.90 8.01 -2.39 -0.02 0.88 16 48 H 0.08 0.91 7.97 -2.39 -0.02 0.89 16 Total: -1.00 -77.69 406.14 1.28 -76.41 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.52 Total: 24.28 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.15 Total: -11.18 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -4.12 Total: -86.08 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.09 Total: -39.41 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -77.69 1.28 -76.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704008443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.677 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds