Wall clock time and date at job start Sat Apr 11 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47349 * 2 1 4 4 C 1.46502 * 119.99697 * 276.80615 * 3 2 1 5 5 C 1.53002 * 109.46805 * 269.99688 * 4 3 2 6 6 N 1.46502 * 109.47185 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99949 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99625 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.46881 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99878 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00320 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00056 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00234 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00156 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46857 * 89.99284 * 15 13 11 17 17 H 1.48496 * 109.47427 * 209.99866 * 15 13 11 18 18 H 1.48503 * 109.46727 * 330.00078 * 15 13 11 19 19 C 1.34775 * 119.99957 * 96.79682 * 3 2 1 20 20 O 1.21284 * 119.99919 * 185.15514 * 19 3 2 21 21 C 1.50699 * 120.00241 * 5.16337 * 19 3 2 22 22 C 1.52994 * 110.34540 * 296.57968 * 21 19 3 23 23 C 1.51105 * 110.38573 * 58.86320 * 21 19 3 24 24 C 1.30528 * 111.10333 * 102.48876 * 23 21 19 25 25 C 1.51105 * 111.10419 * 0.02562 * 24 23 21 26 26 C 1.54633 * 104.72626 * 16.43646 * 25 24 23 27 27 H 1.09001 * 109.47118 * 183.06380 * 1 2 3 28 28 H 1.08998 * 109.47513 * 303.06329 * 1 2 3 29 29 H 1.09003 * 109.47096 * 63.06313 * 1 2 3 30 30 H 1.08998 * 109.47143 * 239.99413 * 2 1 3 31 31 H 1.09004 * 109.46970 * 119.99855 * 2 1 3 32 32 H 1.08992 * 109.47264 * 29.99399 * 4 3 2 33 33 H 1.08997 * 109.47024 * 150.00125 * 4 3 2 34 34 H 1.09008 * 109.46843 * 300.00181 * 5 4 3 35 35 H 1.09000 * 109.47423 * 60.00166 * 5 4 3 36 36 H 0.97003 * 119.99369 * 0.02562 * 6 5 4 37 37 H 1.08999 * 109.47138 * 299.99920 * 9 7 6 38 38 H 1.08997 * 109.46989 * 60.00991 * 9 7 6 39 39 H 0.97006 * 120.00286 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47357 * 182.11865 * 22 21 19 41 41 H 1.08996 * 109.47713 * 62.11729 * 22 21 19 42 42 H 1.09001 * 109.46922 * 302.12084 * 22 21 19 43 43 H 1.07999 * 124.45131 * 282.51312 * 23 21 19 44 44 H 1.08000 * 124.45231 * 180.02562 * 24 23 21 45 45 H 1.09001 * 110.38882 * 135.24823 * 25 24 23 46 46 H 1.09001 * 110.38679 * 257.50820 * 25 24 23 47 47 H 1.08998 * 111.04007 * 217.33874 * 26 25 24 48 48 H 1.08997 * 111.03855 * 93.39730 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1208 2.1219 -1.2598 5 6 3.5069 1.9023 -1.8693 6 7 3.6096 2.6434 -3.1288 7 6 4.7496 2.5982 -3.8462 8 8 5.6904 1.9437 -3.4494 9 6 4.8550 3.3601 -5.1421 10 16 6.4949 3.1004 -5.8630 11 6 6.3447 4.0744 -7.3236 12 1 5.4244 4.6007 -7.5295 13 6 7.4096 4.1662 -8.2091 14 7 7.2977 4.8943 -9.3000 15 14 9.0018 3.2565 -7.8527 16 1 8.9417 1.8997 -8.4533 17 1 10.1422 4.0067 -8.4374 18 1 9.1871 3.1398 -6.3839 19 6 2.3733 1.9705 1.1590 20 8 2.6882 3.1416 1.1723 21 6 2.3789 1.1742 2.4384 22 6 0.9641 0.6997 2.7758 23 6 3.3155 -0.0056 2.3200 24 6 4.4405 0.2233 2.9410 25 6 4.4415 1.5936 3.5777 26 6 2.9547 2.0180 3.5996 27 1 -0.3633 -1.0262 0.0549 28 1 -0.3634 0.5606 0.8612 29 1 -0.3633 0.4656 -0.9162 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3586 1.7666 -1.9532 33 1 1.9719 3.1848 -1.0696 34 1 4.2692 2.2576 -1.1758 35 1 3.6559 0.8394 -2.0595 36 1 2.8573 3.1672 -3.4460 37 1 4.0931 3.0044 -5.8357 38 1 4.7057 4.4229 -4.9519 39 1 8.0418 4.9581 -9.9190 40 1 0.9784 0.1582 3.7217 41 1 0.6035 0.0411 1.9856 42 1 0.3023 1.5616 2.8605 43 1 3.0847 -0.9182 1.7906 44 1 5.2628 -0.4750 2.9930 45 1 4.8362 1.5406 4.5924 46 1 5.0283 2.2902 2.9789 47 1 2.8490 3.0839 3.3981 48 1 2.4858 1.7521 4.5469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704263981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:14 Heat of formation + Delta-G solvation = -40.477826 kcal Electronic energy + Delta-G solvation = -27322.809511 eV Core-core repulsion = 23505.011779 eV Total energy + Delta-G solvation = -3817.797732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37610 -39.29107 -38.13312 -36.72712 -34.83796 -32.45434 -32.41280 -31.07726 -30.11501 -29.39150 -28.03320 -25.62212 -25.36873 -24.03403 -23.65984 -21.41825 -20.53106 -19.89330 -19.08420 -17.85587 -17.18834 -16.90742 -16.34539 -16.16706 -15.81804 -15.50546 -15.14936 -14.92326 -14.78423 -14.72687 -14.01653 -13.84134 -13.68118 -13.36459 -13.24000 -13.05261 -12.85488 -12.79071 -12.57244 -12.31643 -12.21539 -12.16948 -11.95225 -11.71540 -11.55490 -11.41267 -11.25812 -11.18785 -10.99901 -10.97120 -10.60871 -10.31400 -9.85451 -9.57159 -9.25253 -9.09117 -9.02125 -8.96530 -8.48944 -6.90723 -6.27917 -3.99552 1.71770 2.34990 2.44949 2.85551 2.98612 3.33314 3.40078 3.51867 3.71606 4.01731 4.09018 4.23502 4.34225 4.39785 4.56148 4.58889 4.73062 4.74298 4.79822 4.83961 4.92681 4.98394 5.09379 5.11100 5.14715 5.16464 5.24479 5.28684 5.32388 5.33899 5.45413 5.53616 5.56384 5.64475 5.71073 5.78920 5.79239 5.80247 5.92366 6.02366 6.05349 6.13803 6.41385 6.51104 6.99435 7.59203 7.84484 7.95153 8.42709 8.49261 9.18282 10.81267 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.002098 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.160007 B =13345.380477 C =13972.039560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 N -0.605 5.605 4 C 0.104 3.896 5 C 0.110 3.890 6 N -0.734 5.734 7 C 0.532 3.468 8 O -0.519 6.519 9 C -0.123 4.123 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.533 3.467 20 O -0.530 6.530 21 C -0.055 4.055 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.138 4.138 25 C -0.107 4.107 26 C -0.108 4.108 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -11.930 26.857 34.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.040 4.040 3 N -0.338 5.338 4 C -0.019 4.019 5 C -0.016 4.016 6 N -0.390 5.390 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C 0.321 3.679 20 O -0.406 6.406 21 C -0.058 4.058 22 C -0.217 4.217 23 C -0.194 4.194 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.146 4.146 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.445 -12.312 27.365 33.749 hybrid contribution -0.731 0.593 -0.950 1.337 sum -16.176 -11.719 26.415 33.117 Atomic orbital electron populations 1.22472 0.95708 1.02792 1.03097 1.22135 0.94667 0.82515 1.04669 1.47717 1.65382 1.14464 1.06200 1.21567 0.96522 0.98764 0.85092 1.21557 0.97322 0.96967 0.85756 1.45796 1.16897 1.52748 1.23519 1.20279 0.81779 0.81036 0.85160 1.90701 1.37188 1.41142 1.70270 1.23273 1.04944 1.03001 0.96171 1.84796 1.12793 1.67009 1.26993 1.22317 1.04901 1.34037 1.05588 0.89363 1.24716 0.98473 0.94310 0.93850 1.69939 1.32596 1.38368 1.10801 0.86732 0.82993 0.80388 0.81729 1.19225 1.19939 1.15910 1.20453 0.75630 0.87190 0.84648 1.90700 1.47537 1.16361 1.85991 1.20571 0.97273 0.94519 0.93483 1.22390 0.93741 1.02153 1.03405 1.23122 0.95946 0.97954 1.02415 1.23476 0.97597 0.97300 0.97172 1.21452 0.97244 0.94697 1.01031 1.22498 0.94792 1.01092 0.96181 0.91119 0.91162 0.92082 0.90195 0.88134 0.89783 0.89003 0.91396 0.91596 0.76626 0.88438 0.88372 0.91950 0.91286 0.89742 0.91996 0.84747 0.85221 0.90683 0.90015 0.89036 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.77 9.14 37.16 0.34 -0.43 16 2 C 0.08 0.45 5.36 -4.04 -0.02 0.43 16 3 N -0.60 -5.14 2.47 -173.69 -0.43 -5.57 16 4 C 0.10 0.94 5.58 -4.04 -0.02 0.91 16 5 C 0.11 1.33 6.00 -4.04 -0.02 1.30 16 6 N -0.73 -9.66 5.56 -60.29 -0.33 -10.00 16 7 C 0.53 9.72 7.85 -10.99 -0.09 9.64 16 8 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 9 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 10 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 11 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 12 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 14 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 15 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 19 C 0.53 5.60 6.52 -10.99 -0.07 5.52 16 20 O -0.53 -7.60 15.01 5.55 0.08 -7.52 16 21 C -0.06 -0.43 0.56 -155.75 -0.09 -0.51 16 22 C -0.16 -0.86 7.34 37.15 0.27 -0.58 16 23 C -0.18 -1.23 8.10 -35.70 -0.29 -1.52 16 24 C -0.14 -1.03 10.78 -35.70 -0.38 -1.41 16 25 C -0.11 -0.86 6.81 -26.83 -0.18 -1.04 16 26 C -0.11 -0.87 6.08 -25.00 -0.15 -1.02 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.32 5.82 -51.93 -0.30 0.01 16 29 H 0.06 0.29 8.12 -51.93 -0.42 -0.14 16 30 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16 31 H 0.10 0.46 2.78 -51.93 -0.14 0.32 16 32 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 33 H 0.09 0.94 7.36 -51.93 -0.38 0.55 16 34 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 37 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 41 H 0.08 0.35 2.99 -51.93 -0.16 0.19 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.14 0.69 6.22 -52.49 -0.33 0.36 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.90 6.89 -51.93 -0.36 0.54 16 48 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -36.75 392.26 -8.38 -45.12 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.49 Total: 0.92 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.27 Total: -3.03 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.01 Total: -41.55 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.75 -8.38 -45.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704263981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.647 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds