Wall clock time and date at job start Sat Apr 11 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47099 * 120.00014 * 2 1 4 4 O 1.21615 * 120.00252 * 179.97438 * 3 2 1 5 5 N 1.34779 * 120.00126 * 359.97438 * 3 2 1 6 6 C 1.46494 * 120.00316 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47280 * 179.97438 * 6 5 3 8 8 H 1.08998 * 109.47444 * 304.99954 * 7 6 5 9 9 C 1.53002 * 109.47064 * 65.00597 * 7 6 5 10 10 C 1.53007 * 109.47242 * 185.00165 * 7 6 5 11 11 N 1.46495 * 109.47196 * 175.00249 * 10 7 6 12 12 C 1.34774 * 120.00277 * 179.97438 * 11 10 7 13 13 O 1.21281 * 119.99811 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00271 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46973 * 180.02562 * 14 12 11 16 16 C 1.76207 * 99.99881 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00123 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00358 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46881 * 89.99887 * 20 18 16 22 22 H 1.48494 * 109.47152 * 210.00236 * 20 18 16 23 23 H 1.48506 * 109.46979 * 330.00269 * 20 18 16 24 24 C 1.32988 * 120.00081 * 179.97438 * 2 1 3 25 25 C 1.51401 * 136.31770 * 179.62814 * 24 2 1 26 26 C 1.53381 * 87.52293 * 206.06142 * 25 24 2 27 27 C 1.51405 * 136.31632 * 0.02562 * 24 2 1 28 28 H 1.09002 * 109.47152 * 89.99987 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00087 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00068 * 1 2 3 31 31 H 0.97001 * 119.99591 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.47479 * 299.99995 * 6 5 3 33 33 H 1.09004 * 109.47042 * 60.00283 * 6 5 3 34 34 H 1.08998 * 109.47515 * 59.99401 * 9 7 6 35 35 H 1.08993 * 109.47381 * 180.02562 * 9 7 6 36 36 H 1.09008 * 109.46720 * 299.99906 * 9 7 6 37 37 H 1.08998 * 109.46774 * 295.00348 * 10 7 6 38 38 H 1.08995 * 109.46946 * 54.99813 * 10 7 6 39 39 H 0.97006 * 120.00115 * 359.97438 * 11 10 7 40 40 H 1.09008 * 109.46747 * 299.99813 * 14 12 11 41 41 H 1.08991 * 109.47132 * 59.99957 * 14 12 11 42 42 H 0.96996 * 119.99586 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.56259 * 320.64361 * 25 24 2 44 44 H 1.09003 * 113.55981 * 91.37508 * 25 24 2 45 45 H 1.09003 * 113.96779 * 220.29461 * 26 25 24 46 46 H 1.08996 * 113.60025 * 88.79390 * 26 25 24 47 47 H 1.09004 * 113.56443 * 268.62354 * 27 24 2 48 48 H 1.09002 * 113.56124 * 39.36103 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2740 0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3011 3.7098 0.0000 7 6 1.3068 4.8728 -0.0014 8 1 0.6237 4.7658 -0.8439 9 6 0.5106 4.8646 1.3051 10 6 2.0678 6.1943 -0.1265 11 7 1.1126 7.2983 -0.2479 12 6 1.5579 8.5644 -0.3703 13 8 2.7495 8.7897 -0.3805 14 6 0.5752 9.7001 -0.4946 15 16 1.4754 11.2633 -0.6428 16 6 0.1223 12.3848 -0.7702 17 1 -0.8914 12.0131 -0.7438 18 6 0.3592 13.7458 -0.9044 19 7 1.5947 14.1989 -0.9361 20 14 -1.0753 14.9346 -1.0402 21 1 -1.4711 15.3897 0.3168 22 1 -0.6711 16.1069 -1.8572 23 1 -2.2242 14.2522 -1.6880 24 6 2.1720 -1.1517 0.0005 25 6 3.6250 -1.5771 -0.0061 26 6 3.1709 -2.8821 -0.6720 27 6 1.8138 -2.6228 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 0.5986 2.4411 -0.0005 32 1 2.9271 3.7677 0.8905 33 1 2.9284 3.7676 -0.8895 34 1 1.1938 4.9716 2.1477 35 1 -0.1980 5.6928 1.3040 36 1 -0.0315 3.9231 1.3943 37 1 2.6849 6.3435 0.7595 38 1 2.7036 6.1650 -1.0114 39 1 0.1594 7.1180 -0.2402 40 1 -0.0420 9.5512 -1.3807 41 1 -0.0605 9.7290 0.3903 42 1 1.7602 15.1499 -1.0303 43 1 4.2567 -0.9604 -0.6455 44 1 4.0420 -1.7188 0.9910 45 1 3.6836 -3.7699 -0.3017 46 1 3.1399 -2.8289 -1.7602 47 1 1.7337 -3.0516 0.9996 48 1 0.9604 -2.8635 -0.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704757588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:48 Heat of formation + Delta-G solvation = -52.853127 kcal Electronic energy + Delta-G solvation = -25677.098622 eV Core-core repulsion = 21858.764256 eV Total energy + Delta-G solvation = -3818.334366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43645 -39.35861 -38.76038 -36.99490 -34.63170 -33.61275 -32.43216 -32.07044 -29.36616 -27.28820 -27.05492 -26.02508 -25.74321 -25.31161 -23.17003 -21.00597 -20.83047 -20.38562 -18.64459 -17.80543 -16.89271 -16.74792 -16.23220 -16.13984 -15.89643 -15.66829 -15.25492 -14.80861 -14.62080 -14.56012 -14.19886 -13.83975 -13.72769 -13.50969 -13.14901 -12.98789 -12.92260 -12.90540 -12.84186 -12.56184 -12.40520 -12.06089 -11.92303 -11.56434 -11.43741 -11.37228 -11.22713 -11.06618 -11.02802 -10.93560 -10.76557 -10.01149 -9.81903 -9.49001 -9.41848 -9.20151 -9.07382 -8.90028 -8.23741 -6.50259 -6.21870 -3.92561 0.94416 2.72645 2.94396 3.07225 3.09579 3.22012 3.28010 3.32347 3.71179 3.89654 4.03255 4.20094 4.26154 4.39968 4.44395 4.52366 4.53397 4.62584 4.79292 5.03989 5.07701 5.09667 5.13268 5.13440 5.17220 5.20632 5.31545 5.33287 5.36710 5.41215 5.45655 5.55675 5.59918 5.62600 5.68167 5.77277 5.83222 5.87188 5.89384 5.93573 6.09185 6.12730 6.22934 6.58682 7.17551 7.59113 7.68306 7.92838 8.34822 8.60555 9.23395 10.85561 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.001421 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.700384 B =19704.682219 C =20174.081606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.171 4.171 3 C 0.556 3.444 4 O -0.538 6.538 5 N -0.726 5.726 6 C 0.127 3.873 7 C -0.115 4.115 8 H 0.084 0.916 9 C -0.150 4.150 10 C 0.129 3.871 11 N -0.738 5.738 12 C 0.531 3.469 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.067 4.067 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.106 4.106 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 -35.024 2.836 35.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.174 4.174 3 C 0.345 3.655 4 O -0.416 6.416 5 N -0.379 5.379 6 C 0.003 3.997 7 C -0.134 4.134 8 H 0.103 0.897 9 C -0.207 4.207 10 C 0.004 3.996 11 N -0.393 5.393 12 C 0.317 3.683 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.069 4.069 25 C -0.140 4.140 26 C -0.180 4.180 27 C -0.143 4.143 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.363 -34.461 2.800 34.655 hybrid contribution -3.315 0.507 -0.086 3.355 sum -5.678 -33.954 2.714 34.532 Atomic orbital electron populations 1.20671 0.90476 1.02911 1.02486 1.20415 0.95815 0.91250 1.09895 1.18232 0.87209 0.83758 0.76330 1.90796 1.13504 1.87682 1.49660 1.45904 1.10408 1.05592 1.75960 1.21293 0.94058 0.81207 1.03177 1.21598 0.97861 0.94142 0.99800 0.89738 1.21895 1.00324 1.01836 0.96695 1.21164 0.91725 0.84019 1.02702 1.45965 1.09802 1.06168 1.77354 1.20308 0.89755 0.82957 0.75270 1.90712 1.16822 1.83751 1.47737 1.23527 1.01991 1.00054 1.04820 1.85422 1.10410 0.91871 1.95650 1.22868 0.93552 0.93697 1.58330 0.90938 1.24990 0.96561 0.97432 0.94557 1.70019 1.18903 1.14790 1.46547 0.86171 0.81251 0.79811 0.78279 1.20271 1.20738 1.19711 1.23286 0.98257 0.93742 0.91589 1.22193 0.93928 0.95930 1.01973 1.22722 0.96548 0.98255 1.00445 1.22306 0.98644 0.91488 1.01844 0.91074 0.91626 0.91129 0.76432 0.90811 0.90868 0.91880 0.91851 0.92603 0.91152 0.91233 0.76862 0.89244 0.89244 0.92172 0.89550 0.88460 0.90350 0.89733 0.88173 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 9.57 36.01 0.34 -0.13 16 2 C -0.17 -1.29 6.00 -102.85 -0.62 -1.91 16 3 C 0.56 5.54 7.75 -12.66 -0.10 5.44 16 4 O -0.54 -7.35 15.15 5.26 0.08 -7.27 16 5 N -0.73 -5.42 5.23 -61.49 -0.32 -5.74 16 6 C 0.13 1.05 5.06 -4.04 -0.02 1.03 16 7 C -0.11 -0.82 2.46 -90.61 -0.22 -1.05 16 8 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 9 C -0.15 -0.96 8.94 37.16 0.33 -0.63 16 10 C 0.13 1.40 5.06 -4.04 -0.02 1.38 16 11 N -0.74 -9.26 5.28 -60.30 -0.32 -9.57 16 12 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 13 O -0.52 -11.72 15.86 5.56 0.09 -11.64 16 14 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 20 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 C -0.07 -0.49 6.60 -100.49 -0.66 -1.15 16 25 C -0.10 -0.77 6.99 -27.56 -0.19 -0.96 16 26 C -0.14 -0.71 8.17 -26.20 -0.21 -0.93 16 27 C -0.11 -0.49 7.71 -27.41 -0.21 -0.70 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.21 6.70 -51.93 -0.35 -0.14 16 30 H 0.07 0.25 7.91 -51.93 -0.41 -0.16 16 31 H 0.40 1.97 5.75 -40.82 -0.23 1.74 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 7.18 -51.93 -0.37 0.03 16 36 H 0.05 0.27 7.18 -51.92 -0.37 -0.10 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 3.75 7.66 -40.82 -0.31 3.44 16 40 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.09 0.81 7.49 -51.93 -0.39 0.42 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -36.83 409.48 -9.96 -46.78 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.90 Total: -0.05 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.25 Total: -5.71 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.09 Total: -40.75 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.83 -9.96 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704757588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.071 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds