Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47099 * 120.00014 * 2 1 4 4 O 1.21615 * 120.00252 * 179.97438 * 3 2 1 5 5 N 1.34779 * 120.00126 * 359.97438 * 3 2 1 6 6 C 1.46494 * 120.00316 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47280 * 179.97438 * 6 5 3 8 8 H 1.08998 * 109.47444 * 304.99954 * 7 6 5 9 9 C 1.53002 * 109.47064 * 65.00597 * 7 6 5 10 10 C 1.53007 * 109.47242 * 185.00165 * 7 6 5 11 11 N 1.46495 * 109.47196 * 175.00249 * 10 7 6 12 12 C 1.34774 * 120.00277 * 179.97438 * 11 10 7 13 13 O 1.21281 * 119.99811 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00271 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46973 * 180.02562 * 14 12 11 16 16 C 1.76207 * 99.99881 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00123 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00358 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46881 * 89.99887 * 20 18 16 22 22 H 1.48494 * 109.47152 * 210.00236 * 20 18 16 23 23 H 1.48506 * 109.46979 * 330.00269 * 20 18 16 24 24 C 1.32988 * 120.00081 * 179.97438 * 2 1 3 25 25 C 1.51401 * 136.31770 * 179.62814 * 24 2 1 26 26 C 1.53381 * 87.52293 * 206.06142 * 25 24 2 27 27 C 1.51405 * 136.31632 * 0.02562 * 24 2 1 28 28 H 1.09002 * 109.47152 * 89.99987 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00087 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00068 * 1 2 3 31 31 H 0.97001 * 119.99591 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.47479 * 299.99995 * 6 5 3 33 33 H 1.09004 * 109.47042 * 60.00283 * 6 5 3 34 34 H 1.08998 * 109.47515 * 59.99401 * 9 7 6 35 35 H 1.08993 * 109.47381 * 180.02562 * 9 7 6 36 36 H 1.09008 * 109.46720 * 299.99906 * 9 7 6 37 37 H 1.08998 * 109.46774 * 295.00348 * 10 7 6 38 38 H 1.08995 * 109.46946 * 54.99813 * 10 7 6 39 39 H 0.97006 * 120.00115 * 359.97438 * 11 10 7 40 40 H 1.09008 * 109.46747 * 299.99813 * 14 12 11 41 41 H 1.08991 * 109.47132 * 59.99957 * 14 12 11 42 42 H 0.96996 * 119.99586 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.56259 * 320.64361 * 25 24 2 44 44 H 1.09003 * 113.55981 * 91.37508 * 25 24 2 45 45 H 1.09003 * 113.96779 * 220.29461 * 26 25 24 46 46 H 1.08996 * 113.60025 * 88.79390 * 26 25 24 47 47 H 1.09004 * 113.56443 * 268.62354 * 27 24 2 48 48 H 1.09002 * 113.56124 * 39.36103 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2740 0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3011 3.7098 0.0000 7 6 1.3068 4.8728 -0.0014 8 1 0.6237 4.7658 -0.8439 9 6 0.5106 4.8646 1.3051 10 6 2.0678 6.1943 -0.1265 11 7 1.1126 7.2983 -0.2479 12 6 1.5579 8.5644 -0.3703 13 8 2.7495 8.7897 -0.3805 14 6 0.5752 9.7001 -0.4946 15 16 1.4754 11.2633 -0.6428 16 6 0.1223 12.3848 -0.7702 17 1 -0.8914 12.0131 -0.7438 18 6 0.3592 13.7458 -0.9044 19 7 1.5947 14.1989 -0.9361 20 14 -1.0753 14.9346 -1.0402 21 1 -1.4711 15.3897 0.3168 22 1 -0.6711 16.1069 -1.8572 23 1 -2.2242 14.2522 -1.6880 24 6 2.1720 -1.1517 0.0005 25 6 3.6250 -1.5771 -0.0061 26 6 3.1709 -2.8821 -0.6720 27 6 1.8138 -2.6228 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 0.5986 2.4411 -0.0005 32 1 2.9271 3.7677 0.8905 33 1 2.9284 3.7676 -0.8895 34 1 1.1938 4.9716 2.1477 35 1 -0.1980 5.6928 1.3040 36 1 -0.0315 3.9231 1.3943 37 1 2.6849 6.3435 0.7595 38 1 2.7036 6.1650 -1.0114 39 1 0.1594 7.1180 -0.2402 40 1 -0.0420 9.5512 -1.3807 41 1 -0.0605 9.7290 0.3903 42 1 1.7602 15.1499 -1.0303 43 1 4.2567 -0.9604 -0.6455 44 1 4.0420 -1.7188 0.9910 45 1 3.6836 -3.7699 -0.3017 46 1 3.1399 -2.8289 -1.7602 47 1 1.7337 -3.0516 0.9996 48 1 0.9604 -2.8635 -0.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704757588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = -78.319714 kcal Electronic energy + Delta-G solvation = -25678.202936 eV Core-core repulsion = 21858.764256 eV Total energy + Delta-G solvation = -3819.438680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14750 -40.64737 -39.37203 -37.91646 -35.61916 -34.57829 -34.29783 -32.94638 -30.80069 -27.94437 -27.69757 -27.47361 -26.62128 -26.31839 -23.78000 -21.86585 -21.62108 -21.46566 -19.87035 -19.19348 -17.79463 -17.66238 -17.36683 -16.89459 -16.87612 -16.78363 -16.57251 -16.22413 -15.83791 -15.47101 -15.19176 -14.85279 -14.68593 -14.39475 -14.32472 -13.95897 -13.86588 -13.62729 -13.35672 -13.30090 -13.27209 -13.15768 -12.88291 -12.87052 -12.61593 -12.47728 -12.21327 -12.17439 -11.91338 -11.86808 -11.71899 -11.44695 -11.13538 -10.98951 -10.70139 -10.26270 -10.22122 -10.12217 -9.73047 -8.66227 -8.33885 -6.12202 0.35193 1.27458 1.43322 1.47782 1.57875 1.62069 2.03540 2.24464 2.27994 2.40302 3.00483 3.32921 3.39701 3.57477 3.70268 3.76741 3.82280 3.83922 3.99595 4.04654 4.22881 4.31312 4.38061 4.41666 4.48758 4.52354 4.67210 4.73405 4.75745 4.76129 4.82111 4.84294 4.87027 4.95346 4.99825 5.03517 5.07766 5.14518 5.30654 5.34914 5.38636 5.42415 5.42616 5.44165 5.73342 6.20569 6.50718 6.56159 7.07479 7.23424 7.25674 8.75374 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.001421 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.700384 B =19704.682219 C =20174.081606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.181 4.181 3 C 0.546 3.454 4 O -0.587 6.587 5 N -0.710 5.710 6 C 0.129 3.871 7 C -0.094 4.094 8 H 0.108 0.892 9 C -0.150 4.150 10 C 0.126 3.874 11 N -0.707 5.707 12 C 0.532 3.468 13 O -0.568 6.568 14 C -0.128 4.128 15 S -0.156 6.156 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 C -0.081 4.081 25 C -0.117 4.117 26 C -0.135 4.135 27 C -0.092 4.092 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.415 0.585 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.418 0.582 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.271 0.729 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -36.996 3.000 38.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.336 3.664 4 O -0.469 6.469 5 N -0.363 5.363 6 C 0.005 3.995 7 C -0.113 4.113 8 H 0.126 0.874 9 C -0.207 4.207 10 C 0.002 3.998 11 N -0.362 5.362 12 C 0.318 3.682 13 O -0.447 6.447 14 C -0.280 4.280 15 S 0.071 5.929 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.181 1.181 24 C -0.083 4.083 25 C -0.154 4.154 26 C -0.172 4.172 27 C -0.128 4.128 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.256 0.744 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.134 0.866 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.505 -36.482 2.970 37.176 hybrid contribution -1.986 0.989 -0.120 2.221 sum -8.490 -35.493 2.850 36.605 Atomic orbital electron populations 1.20728 0.87765 1.04198 1.03447 1.20607 0.97549 0.89926 1.10349 1.18803 0.86881 0.85137 0.75560 1.90775 1.15675 1.88399 1.52015 1.45745 1.11106 1.04631 1.74804 1.21161 0.94316 0.82126 1.01925 1.21422 0.97302 0.91107 1.01508 0.87408 1.21919 1.00113 1.03387 0.95327 1.21265 0.91775 0.85077 1.01689 1.45642 1.11278 1.04517 1.74773 1.20099 0.88598 0.84303 0.75216 1.90704 1.18737 1.84673 1.50554 1.23365 1.01549 0.96198 1.06849 1.85638 1.13951 0.97254 1.96045 1.23214 0.93771 0.94218 1.58163 0.89753 1.26134 0.99652 0.99553 0.93793 1.70191 1.21619 1.15290 1.47779 0.84949 0.77443 0.76908 0.78648 1.19310 1.20417 1.18065 1.23691 0.98212 0.95388 0.91038 1.22276 0.94090 0.97292 1.01740 1.22711 0.96925 0.97298 1.00304 1.22308 0.98694 0.88953 1.02862 0.90145 0.90323 0.89900 0.74566 0.92188 0.92315 0.93073 0.91166 0.90355 0.92384 0.92368 0.74435 0.87026 0.86980 0.92033 0.92586 0.88484 0.88823 0.89860 0.86621 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.57 71.24 0.68 0.07 16 2 C -0.18 -2.54 6.00 -18.70 -0.11 -2.65 16 3 C 0.55 10.85 7.75 86.57 0.67 11.52 16 4 O -0.59 -17.00 15.15 -4.08 -0.06 -17.06 16 5 N -0.71 -9.69 5.23 -466.72 -2.44 -12.13 16 6 C 0.13 2.08 5.06 86.38 0.44 2.52 16 7 C -0.09 -1.15 2.46 -10.79 -0.03 -1.18 16 8 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 9 C -0.15 -1.48 8.94 71.98 0.64 -0.84 16 10 C 0.13 2.64 5.06 86.38 0.44 3.08 16 11 N -0.71 -16.37 5.28 -463.07 -2.45 -18.81 16 12 C 0.53 19.18 7.85 87.66 0.69 19.86 16 13 O -0.57 -26.49 15.86 -3.03 -0.05 -26.54 16 14 C -0.13 -4.94 6.16 71.24 0.44 -4.51 16 15 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 16 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.76 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 20 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 C -0.08 -1.13 6.60 -17.17 -0.11 -1.25 16 25 C -0.12 -1.81 6.99 30.06 0.21 -1.60 16 26 C -0.14 -1.20 8.17 30.94 0.25 -0.95 16 27 C -0.09 -0.64 7.71 30.15 0.23 -0.41 16 28 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.23 6.70 -2.39 -0.02 0.21 16 30 H 0.08 0.31 7.91 -2.38 -0.02 0.29 16 31 H 0.42 2.90 5.75 -92.71 -0.53 2.37 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.63 7.18 -2.39 -0.02 0.61 16 36 H 0.08 0.46 7.18 -2.38 -0.02 0.44 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.42 6.38 7.66 -92.70 -0.71 5.67 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.06 1.18 7.49 -2.38 -0.02 1.16 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 48 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -85.17 409.48 1.43 -83.74 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.27 Total: 16.59 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.55 Total: -5.41 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.60 Total: -86.82 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.11 Total: -43.59 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -85.17 1.43 -83.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704757588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.422 kcal (2) G-P(sol) polarization free energy of solvation -85.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds