Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99757 * 2 1 4 4 N 1.34776 * 120.00105 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62869 * 354.77034 * 4 2 1 6 6 C 1.53198 * 108.89319 * 126.34205 * 5 4 2 7 7 C 1.53352 * 109.14584 * 54.57759 * 6 5 4 8 8 C 1.53046 * 109.60930 * 298.71404 * 7 6 5 9 9 C 1.46925 * 120.63102 * 174.79458 * 4 2 1 10 10 H 1.09007 * 109.58762 * 113.80054 * 9 4 2 11 11 C 1.53004 * 109.58802 * 353.37518 * 9 4 2 12 12 H 1.08995 * 110.88205 * 319.28526 * 11 9 4 13 13 C 1.55158 * 111.00233 * 83.16345 * 11 9 4 14 14 C 1.54324 * 102.93890 * 153.57871 * 13 11 9 15 15 N 1.47023 * 107.26976 * 337.80577 * 14 13 11 16 16 C 1.34785 * 125.64813 * 178.97479 * 15 14 13 17 17 O 1.21275 * 120.00331 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99604 * 359.97438 * 16 15 14 19 19 S 1.81004 * 109.46892 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00094 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99594 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00505 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99704 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47302 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47084 * 120.00094 * 24 22 20 27 27 H 1.48500 * 109.47211 * 239.99952 * 24 22 20 28 28 C 1.47464 * 108.72472 * 358.97620 * 15 14 13 29 29 H 1.08998 * 109.47472 * 264.63083 * 1 2 3 30 30 H 1.09000 * 109.46860 * 24.63871 * 1 2 3 31 31 H 1.09006 * 109.46667 * 144.63259 * 1 2 3 32 32 H 1.09001 * 109.59052 * 246.19717 * 5 4 2 33 33 H 1.08996 * 109.59093 * 6.48849 * 5 4 2 34 34 H 1.08996 * 109.49982 * 174.65543 * 6 5 4 35 35 H 1.09002 * 109.49599 * 294.75626 * 6 5 4 36 36 H 1.09003 * 109.41853 * 178.67525 * 7 6 5 37 37 H 1.09001 * 109.42308 * 58.75196 * 7 6 5 38 38 H 1.09000 * 109.49661 * 301.42317 * 8 7 6 39 39 H 1.08996 * 109.52110 * 181.34439 * 8 7 6 40 40 H 1.08994 * 110.72125 * 271.94195 * 13 11 9 41 41 H 1.09002 * 110.71750 * 35.04103 * 13 11 9 42 42 H 1.09003 * 109.88553 * 97.22386 * 14 13 11 43 43 H 1.09005 * 109.88418 * 218.39286 * 14 13 11 44 44 H 1.08999 * 109.47573 * 300.00272 * 18 16 15 45 45 H 1.09007 * 109.47306 * 60.00378 * 18 16 15 46 46 H 0.96994 * 120.00204 * 179.97438 * 23 22 20 47 47 H 1.08995 * 110.35102 * 265.24700 * 28 15 14 48 48 H 1.09006 * 110.40319 * 142.91580 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4649 -2.4449 0.1163 6 6 1.8779 -3.3522 -1.0469 7 6 3.4057 -3.4837 -1.0642 8 6 4.0375 -2.1057 -1.2748 9 6 3.6456 -1.1860 -0.1142 10 1 4.0799 -1.5616 0.8124 11 6 4.1570 0.2301 -0.3867 12 1 3.5094 0.7476 -1.0943 13 6 4.2947 1.0350 0.9326 14 6 5.3921 2.0663 0.5952 15 7 6.1673 1.5260 -0.5311 16 6 7.2054 2.1375 -1.1354 17 8 7.7741 1.5957 -2.0594 18 6 7.6592 3.4946 -0.6628 19 16 9.0613 4.0452 -1.6664 20 6 9.3779 5.6088 -0.9183 21 1 8.7686 5.9455 -0.0926 22 6 10.4096 6.4079 -1.3908 23 7 11.1519 5.9976 -2.3974 24 14 10.7448 8.0659 -0.5980 25 1 9.7766 8.2920 0.5050 26 1 12.1271 8.0848 -0.0557 27 1 10.5969 9.1391 -1.6137 28 6 5.6215 0.2041 -0.8906 29 1 -0.3634 -0.0962 1.0231 30 1 -0.3633 0.9341 -0.4284 31 1 -0.3633 -0.8381 -0.5949 32 1 1.7214 -2.9232 1.0616 33 1 0.3903 -2.2666 0.0767 34 1 1.4262 -4.3359 -0.9192 35 1 1.5401 -2.9154 -1.9867 36 1 3.7031 -4.1475 -1.8761 37 1 3.7447 -3.8973 -0.1144 38 1 3.6795 -1.6809 -2.2126 39 1 5.1224 -2.2041 -1.3108 40 1 3.3581 1.5352 1.1788 41 1 4.6099 0.3857 1.7494 42 1 4.9352 3.0140 0.3100 43 1 6.0429 2.2108 1.4577 44 1 6.8400 4.2067 -0.7620 45 1 7.9623 3.4328 0.3825 46 1 11.8727 6.5563 -2.7278 47 1 6.1811 -0.5860 -0.3899 48 1 5.6485 0.0629 -1.9711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705301965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -48.640100 kcal Electronic energy + Delta-G solvation = -27997.828344 eV Core-core repulsion = 24179.676669 eV Total energy + Delta-G solvation = -3818.151675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21777 -39.31387 -37.76488 -36.94763 -33.60570 -33.06465 -32.37105 -30.49224 -30.02693 -29.23828 -27.86714 -25.47508 -25.15305 -24.21032 -22.61863 -21.44670 -20.56238 -19.55707 -19.05438 -17.65454 -17.19238 -16.67531 -16.30441 -15.92323 -15.75595 -14.97488 -14.84977 -14.74908 -14.51940 -14.30877 -14.05712 -13.77044 -13.67373 -13.44243 -13.24492 -13.16732 -12.76560 -12.65488 -12.55588 -12.46771 -12.23399 -11.77829 -11.73957 -11.65326 -11.45147 -11.11938 -11.02561 -10.95792 -10.82548 -10.73451 -10.67153 -10.41138 -9.73993 -9.44792 -9.23396 -9.01744 -8.88161 -8.28447 -8.15237 -6.43013 -6.15948 -3.85702 2.28520 2.57038 3.06646 3.20584 3.25732 3.31543 3.36635 3.73950 4.10231 4.22705 4.26126 4.32269 4.43425 4.52731 4.66944 4.75881 4.80317 4.82888 4.86986 4.98117 5.01754 5.14009 5.19028 5.20262 5.28436 5.35740 5.39111 5.42324 5.46091 5.51042 5.53243 5.62757 5.65275 5.69917 5.83202 5.88173 5.92418 5.96406 6.01591 6.10023 6.25862 6.36359 6.48775 6.62276 7.05539 7.65878 7.85717 7.93701 8.41693 8.70480 9.29375 10.91623 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.002255 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.616293 B =12411.677185 C =13216.412032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.502 3.498 3 O -0.521 6.521 4 N -0.609 5.609 5 C 0.106 3.894 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.136 4.136 9 C 0.160 3.840 10 H 0.074 0.926 11 C -0.093 4.093 12 H 0.114 0.886 13 C -0.119 4.119 14 C 0.104 3.896 15 N -0.623 5.623 16 C 0.547 3.453 17 O -0.521 6.521 18 C -0.145 4.145 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.109 3.891 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.267 0.733 47 H 0.059 0.941 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.703 -21.117 8.071 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.292 3.708 3 O -0.399 6.399 4 N -0.344 5.344 5 C -0.017 4.017 6 C -0.175 4.175 7 C -0.158 4.158 8 C -0.174 4.174 9 C 0.057 3.943 10 H 0.091 0.909 11 C -0.112 4.112 12 H 0.132 0.868 13 C -0.156 4.156 14 C -0.020 4.020 15 N -0.360 5.360 16 C 0.336 3.664 17 O -0.396 6.396 18 C -0.296 4.296 19 S 0.164 5.836 20 C -0.680 4.680 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.318 -21.264 6.547 32.960 hybrid contribution -0.463 1.513 1.647 2.284 sum -24.781 -19.750 8.194 32.731 Atomic orbital electron populations 1.22009 0.92386 1.04918 1.04317 1.20781 0.90319 0.83392 0.76315 1.90713 1.68802 1.31924 1.48425 1.48145 1.06923 1.06097 1.73215 1.21798 0.97160 0.83916 0.98845 1.21996 0.96848 0.99763 0.98915 1.21576 0.94768 0.97091 1.02361 1.22071 1.01647 0.95005 0.98714 1.21213 0.79099 0.95699 0.98314 0.90850 1.22799 0.94796 0.93818 0.99788 0.86845 1.23059 0.99181 0.97315 0.96072 1.22011 0.93007 0.97905 0.89030 1.48481 1.32879 1.19535 1.35128 1.20001 0.78057 0.86601 0.81743 1.90687 1.54371 1.66200 1.28298 1.23495 1.05381 0.95493 1.05206 1.85360 1.33060 1.21455 1.43751 1.22909 1.20186 1.03855 1.21080 0.90909 1.24994 0.95018 0.98658 0.95000 1.70034 1.18778 1.37381 1.24183 0.86116 0.78221 0.82090 0.79060 1.19617 1.20592 1.20589 1.22292 0.93060 0.85378 1.00772 0.89176 0.88940 0.90134 0.91206 0.89395 0.90629 0.91346 0.91393 0.91698 0.91115 0.90012 0.87353 0.92292 0.91466 0.91898 0.89346 0.89406 0.92301 0.92260 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.81 9.27 36.01 0.33 -0.48 16 2 C 0.50 4.11 7.55 -10.99 -0.08 4.03 16 3 O -0.52 -6.11 10.10 5.56 0.06 -6.06 16 4 N -0.61 -4.16 2.97 -165.22 -0.49 -4.65 16 5 C 0.11 0.40 6.29 -3.71 -0.02 0.38 16 6 C -0.14 -0.53 6.11 -26.45 -0.16 -0.69 16 7 C -0.12 -0.62 5.89 -26.53 -0.16 -0.78 16 8 C -0.14 -0.99 4.73 -26.61 -0.13 -1.12 16 9 C 0.16 1.31 2.66 -67.60 -0.18 1.13 16 10 H 0.07 0.58 7.76 -51.92 -0.40 0.18 16 11 C -0.09 -1.04 1.96 -88.47 -0.17 -1.21 16 12 H 0.11 1.52 5.92 -51.96 -0.31 1.22 16 13 C -0.12 -1.35 5.71 -24.90 -0.14 -1.50 16 14 C 0.10 1.43 6.49 -3.06 -0.02 1.41 16 15 N -0.62 -10.45 3.33 -170.49 -0.57 -11.02 16 16 C 0.55 11.70 7.87 -10.98 -0.09 11.61 16 17 O -0.52 -12.97 16.12 5.56 0.09 -12.88 16 18 C -0.15 -3.25 5.35 36.01 0.19 -3.06 16 19 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 20 C -0.53 -15.75 9.50 30.94 0.29 -15.46 16 21 H 0.07 2.05 7.80 -52.49 -0.41 1.65 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.90 13.22 55.49 0.73 -26.16 16 24 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.11 1.49 4.98 -2.51 -0.01 1.48 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.22 6.52 -51.93 -0.34 -0.12 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.18 5.55 -51.93 -0.29 -0.11 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.64 6.93 -51.93 -0.36 0.28 16 40 H 0.11 1.31 5.54 -52.11 -0.29 1.02 16 41 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.88 8.14 -51.92 -0.42 1.45 16 45 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 48 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -36.82 382.42 -9.91 -46.73 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.82 Total: -2.51 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.44 Total: -2.24 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.32 Total: -41.83 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.15 Total: -18.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.82 -9.91 -46.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705301965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.914 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds