Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99757 * 2 1 4 4 N 1.34776 * 120.00105 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62869 * 354.77034 * 4 2 1 6 6 C 1.53198 * 108.89319 * 126.34205 * 5 4 2 7 7 C 1.53352 * 109.14584 * 54.57759 * 6 5 4 8 8 C 1.53046 * 109.60930 * 298.71404 * 7 6 5 9 9 C 1.46925 * 120.63102 * 174.79458 * 4 2 1 10 10 H 1.09007 * 109.58762 * 113.80054 * 9 4 2 11 11 C 1.53004 * 109.58802 * 353.37518 * 9 4 2 12 12 H 1.08995 * 110.88205 * 319.28526 * 11 9 4 13 13 C 1.55158 * 111.00233 * 83.16345 * 11 9 4 14 14 C 1.54324 * 102.93890 * 153.57871 * 13 11 9 15 15 N 1.47023 * 107.26976 * 337.80577 * 14 13 11 16 16 C 1.34785 * 125.64813 * 178.97479 * 15 14 13 17 17 O 1.21275 * 120.00331 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99604 * 359.97438 * 16 15 14 19 19 S 1.81004 * 109.46892 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00094 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99594 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00505 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99704 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47302 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47084 * 120.00094 * 24 22 20 27 27 H 1.48500 * 109.47211 * 239.99952 * 24 22 20 28 28 C 1.47464 * 108.72472 * 358.97620 * 15 14 13 29 29 H 1.08998 * 109.47472 * 264.63083 * 1 2 3 30 30 H 1.09000 * 109.46860 * 24.63871 * 1 2 3 31 31 H 1.09006 * 109.46667 * 144.63259 * 1 2 3 32 32 H 1.09001 * 109.59052 * 246.19717 * 5 4 2 33 33 H 1.08996 * 109.59093 * 6.48849 * 5 4 2 34 34 H 1.08996 * 109.49982 * 174.65543 * 6 5 4 35 35 H 1.09002 * 109.49599 * 294.75626 * 6 5 4 36 36 H 1.09003 * 109.41853 * 178.67525 * 7 6 5 37 37 H 1.09001 * 109.42308 * 58.75196 * 7 6 5 38 38 H 1.09000 * 109.49661 * 301.42317 * 8 7 6 39 39 H 1.08996 * 109.52110 * 181.34439 * 8 7 6 40 40 H 1.08994 * 110.72125 * 271.94195 * 13 11 9 41 41 H 1.09002 * 110.71750 * 35.04103 * 13 11 9 42 42 H 1.09003 * 109.88553 * 97.22386 * 14 13 11 43 43 H 1.09005 * 109.88418 * 218.39286 * 14 13 11 44 44 H 1.08999 * 109.47573 * 300.00272 * 18 16 15 45 45 H 1.09007 * 109.47306 * 60.00378 * 18 16 15 46 46 H 0.96994 * 120.00204 * 179.97438 * 23 22 20 47 47 H 1.08995 * 110.35102 * 265.24700 * 28 15 14 48 48 H 1.09006 * 110.40319 * 142.91580 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4649 -2.4449 0.1163 6 6 1.8779 -3.3522 -1.0469 7 6 3.4057 -3.4837 -1.0642 8 6 4.0375 -2.1057 -1.2748 9 6 3.6456 -1.1860 -0.1142 10 1 4.0799 -1.5616 0.8124 11 6 4.1570 0.2301 -0.3867 12 1 3.5094 0.7476 -1.0943 13 6 4.2947 1.0350 0.9326 14 6 5.3921 2.0663 0.5952 15 7 6.1673 1.5260 -0.5311 16 6 7.2054 2.1375 -1.1354 17 8 7.7741 1.5957 -2.0594 18 6 7.6592 3.4946 -0.6628 19 16 9.0613 4.0452 -1.6664 20 6 9.3779 5.6088 -0.9183 21 1 8.7686 5.9455 -0.0926 22 6 10.4096 6.4079 -1.3908 23 7 11.1519 5.9976 -2.3974 24 14 10.7448 8.0659 -0.5980 25 1 9.7766 8.2920 0.5050 26 1 12.1271 8.0848 -0.0557 27 1 10.5969 9.1391 -1.6137 28 6 5.6215 0.2041 -0.8906 29 1 -0.3634 -0.0962 1.0231 30 1 -0.3633 0.9341 -0.4284 31 1 -0.3633 -0.8381 -0.5949 32 1 1.7214 -2.9232 1.0616 33 1 0.3903 -2.2666 0.0767 34 1 1.4262 -4.3359 -0.9192 35 1 1.5401 -2.9154 -1.9867 36 1 3.7031 -4.1475 -1.8761 37 1 3.7447 -3.8973 -0.1144 38 1 3.6795 -1.6809 -2.2126 39 1 5.1224 -2.2041 -1.3108 40 1 3.3581 1.5352 1.1788 41 1 4.6099 0.3857 1.7494 42 1 4.9352 3.0140 0.3100 43 1 6.0429 2.2108 1.4577 44 1 6.8400 4.2067 -0.7620 45 1 7.9623 3.4328 0.3825 46 1 11.8727 6.5563 -2.7278 47 1 6.1811 -0.5860 -0.3899 48 1 5.6485 0.0629 -1.9711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705301965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -72.574032 kcal Electronic energy + Delta-G solvation = -27998.866197 eV Core-core repulsion = 24179.676669 eV Total energy + Delta-G solvation = -3819.189528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95366 -40.69249 -38.49993 -38.12249 -34.61929 -34.42414 -33.74492 -31.64103 -30.97219 -30.13630 -28.96670 -27.69589 -25.77203 -25.11043 -23.54258 -22.12474 -21.35339 -20.62621 -20.12309 -19.57060 -18.23907 -17.64471 -17.43766 -16.98452 -16.91345 -16.56155 -16.20591 -15.84972 -15.63696 -15.14430 -15.00971 -14.91934 -14.55977 -14.41278 -14.14076 -14.07072 -13.92843 -13.87245 -13.56910 -13.28747 -13.17749 -13.08035 -13.04556 -12.92724 -12.62975 -12.51732 -12.25083 -12.01996 -11.75055 -11.70418 -11.51894 -11.39161 -11.24659 -11.18084 -11.00027 -10.33170 -10.16532 -9.64807 -9.46433 -8.71935 -8.37362 -6.16753 1.20520 1.39934 1.42012 1.50355 1.55573 1.70513 2.00104 2.15076 2.24515 2.96430 3.19810 3.46046 3.48608 3.72111 3.81288 3.90940 4.00555 4.09149 4.09625 4.16060 4.23037 4.27692 4.30817 4.38635 4.43812 4.50956 4.53645 4.58612 4.64202 4.69731 4.75867 4.83664 4.91099 4.96610 5.00810 5.04223 5.12218 5.16534 5.22825 5.27499 5.37906 5.38934 5.45213 5.50824 5.72925 6.17413 6.35697 6.54271 7.03283 7.05752 7.34437 8.72470 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.002255 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.616293 B =12411.677185 C =13216.412032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.492 3.508 3 O -0.565 6.565 4 N -0.607 5.607 5 C 0.102 3.898 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.135 4.135 9 C 0.163 3.837 10 H 0.085 0.915 11 C -0.078 4.078 12 H 0.091 0.909 13 C -0.106 4.106 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.544 3.456 17 O -0.567 6.567 18 C -0.119 4.119 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.002 2.998 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.105 3.895 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.272 0.728 47 H 0.074 0.926 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.157 -22.017 10.595 37.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.283 3.717 3 O -0.447 6.447 4 N -0.340 5.340 5 C -0.020 4.020 6 C -0.172 4.172 7 C -0.156 4.156 8 C -0.173 4.173 9 C 0.060 3.940 10 H 0.103 0.897 11 C -0.097 4.097 12 H 0.109 0.891 13 C -0.143 4.143 14 C -0.027 4.027 15 N -0.350 5.350 16 C 0.332 3.668 17 O -0.446 6.446 18 C -0.270 4.270 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.824 3.176 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.018 4.018 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.839 -22.221 9.103 36.014 hybrid contribution 0.192 1.677 0.863 1.896 sum -26.648 -20.544 9.966 35.092 Atomic orbital electron populations 1.21995 0.89442 1.05508 1.05912 1.21473 0.91842 0.82998 0.75348 1.90683 1.69916 1.33424 1.50635 1.48253 1.06262 1.07139 1.72354 1.22075 0.98212 0.82297 0.99386 1.21990 0.95675 1.00903 0.98594 1.21576 0.95818 0.95345 1.02867 1.22032 1.01281 0.96349 0.97643 1.21094 0.80433 0.93524 0.98992 0.89699 1.22628 0.92249 0.95804 0.99039 0.89143 1.23006 0.98065 0.96792 0.96451 1.22293 0.93635 0.98564 0.88195 1.48482 1.31258 1.20338 1.34929 1.19791 0.79039 0.86325 0.81644 1.90662 1.56392 1.67135 1.30428 1.23289 1.02756 0.96419 1.04532 1.85524 1.37004 1.22776 1.46752 1.23208 1.20868 1.03878 1.21439 0.90108 1.26172 0.94390 1.03244 0.95398 1.70191 1.19447 1.39316 1.25777 0.84861 0.78509 0.75998 0.78276 1.18157 1.19614 1.19739 1.22518 0.95072 0.84090 1.00118 0.87240 0.89794 0.87803 0.89799 0.87009 0.88443 0.92222 0.91343 0.90760 0.92773 0.90924 0.87445 0.90425 0.91872 0.90547 0.88150 0.87654 0.91877 0.90738 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.27 71.24 0.66 -0.46 16 2 C 0.49 7.27 7.55 87.66 0.66 7.93 16 3 O -0.57 -13.03 10.10 -3.04 -0.03 -13.06 16 4 N -0.61 -6.94 2.97 -795.02 -2.36 -9.31 16 5 C 0.10 0.41 6.29 86.37 0.54 0.95 16 6 C -0.13 -0.63 6.11 30.78 0.19 -0.45 16 7 C -0.12 -0.98 5.89 30.73 0.18 -0.80 16 8 C -0.13 -1.88 4.73 30.67 0.15 -1.74 16 9 C 0.16 2.43 2.66 44.97 0.12 2.55 16 10 H 0.09 1.12 7.76 -2.38 -0.02 1.10 16 11 C -0.08 -1.72 1.96 -9.40 -0.02 -1.74 16 12 H 0.09 2.50 5.92 -3.02 -0.02 2.48 16 13 C -0.11 -2.27 5.71 31.78 0.18 -2.09 16 14 C 0.10 2.54 6.49 86.73 0.56 3.11 16 15 N -0.62 -20.83 3.33 -811.68 -2.70 -23.53 16 16 C 0.54 23.89 7.87 87.66 0.69 24.58 16 17 O -0.57 -29.60 16.12 -3.02 -0.05 -29.65 16 18 C -0.12 -5.41 5.35 71.24 0.38 -5.03 16 19 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 20 C -0.55 -32.76 9.50 67.95 0.65 -32.11 16 21 H 0.08 4.55 7.80 -2.91 -0.02 4.52 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -57.62 13.22 21.65 0.29 -57.33 16 24 Si 1.00 45.15 29.55 68.60 2.03 47.17 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C 0.10 2.91 4.98 86.85 0.43 3.35 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.19 6.52 -2.38 -0.02 0.17 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.11 -0.05 5.55 -2.39 -0.01 -0.06 16 34 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.13 6.93 -2.39 -0.02 1.11 16 40 H 0.11 2.48 5.54 -5.43 -0.03 2.45 16 41 H 0.08 1.39 7.78 -2.39 -0.02 1.37 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.10 4.29 8.14 -2.40 -0.02 4.27 16 45 H 0.11 4.39 8.14 -2.39 -0.02 4.37 16 46 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.07 1.87 7.56 -2.39 -0.02 1.85 16 48 H 0.06 1.79 8.01 -2.38 -0.02 1.77 16 Total: -1.00 -83.84 382.42 2.77 -81.06 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.93 Total: 15.31 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.84 Total: -0.74 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.78 Total: -90.17 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.08 Total: -42.71 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -83.84 2.77 -81.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705301965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.489 kcal (2) G-P(sol) polarization free energy of solvation -83.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds