Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21272 * 120.00057 * 2 1 4 4 N 1.34778 * 119.99880 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.62853 * 6.19808 * 4 2 1 6 6 C 1.53191 * 108.77111 * 233.62305 * 5 4 2 7 7 C 1.53037 * 109.31723 * 305.36504 * 6 5 4 8 8 C 1.53080 * 109.65678 * 61.30340 * 7 6 5 9 9 C 1.46927 * 120.63368 * 186.21383 * 4 2 1 10 10 H 1.08999 * 109.58613 * 246.30917 * 9 4 2 11 11 C 1.53001 * 109.58170 * 6.58606 * 9 4 2 12 12 H 1.09006 * 110.88878 * 302.96676 * 11 9 4 13 13 C 1.55158 * 111.00584 * 66.85031 * 11 9 4 14 14 C 1.54317 * 102.94277 * 153.57277 * 13 11 9 15 15 N 1.47021 * 107.27568 * 337.80952 * 14 13 11 16 16 C 1.34768 * 125.65336 * 178.90506 * 15 14 13 17 17 O 1.21281 * 120.00627 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99683 * 0.02562 * 16 15 14 19 19 S 1.80999 * 109.46936 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99962 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00231 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00007 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99765 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99748 * 179.72604 * 22 20 19 25 25 H 1.48496 * 109.47468 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47129 * 120.00229 * 24 22 20 27 27 H 1.48504 * 109.46920 * 239.99747 * 24 22 20 28 28 C 1.47425 * 108.69732 * 359.16501 * 15 14 13 29 29 H 1.08998 * 109.47559 * 270.00464 * 1 2 3 30 30 H 1.08999 * 109.46993 * 30.00624 * 1 2 3 31 31 H 1.09004 * 109.46865 * 150.00131 * 1 2 3 32 32 H 1.08990 * 109.58749 * 353.41365 * 5 4 2 33 33 H 1.09004 * 109.58604 * 113.69673 * 5 4 2 34 34 H 1.08998 * 109.49400 * 65.32135 * 6 5 4 35 35 H 1.09002 * 109.49758 * 185.37786 * 6 5 4 36 36 H 1.09000 * 109.46254 * 181.38162 * 7 6 5 37 37 H 1.08994 * 109.45936 * 301.34507 * 7 6 5 38 38 H 1.09000 * 109.62160 * 178.83244 * 8 7 6 39 39 H 1.08994 * 109.39169 * 58.72242 * 8 7 6 40 40 H 1.08998 * 110.71929 * 35.20656 * 13 11 9 41 41 H 1.09000 * 110.71585 * 271.93749 * 13 11 9 42 42 H 1.08998 * 109.88463 * 218.38448 * 14 13 11 43 43 H 1.09001 * 109.88188 * 97.22465 * 14 13 11 44 44 H 1.08996 * 109.47396 * 60.00328 * 18 16 15 45 45 H 1.09003 * 109.47135 * 299.99665 * 18 16 15 46 46 H 0.97005 * 119.99677 * 179.97438 * 23 22 20 47 47 H 1.09007 * 110.36647 * 142.74074 * 28 15 14 48 48 H 1.09000 * 110.36782 * 265.05989 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4666 -2.4440 -0.1354 6 6 1.8652 -3.3581 1.0275 7 6 3.3892 -3.4916 1.0670 8 6 4.0208 -2.1161 1.2956 9 6 3.6436 -1.1872 0.1374 10 1 4.0920 -1.5536 -0.7860 11 6 4.1508 0.2268 0.4278 12 1 3.8398 0.9196 -0.3542 13 6 3.6752 0.7127 1.8225 14 6 4.7590 1.7369 2.2198 15 7 5.9650 1.4209 1.4404 16 6 7.1288 2.0990 1.4844 17 8 8.0620 1.7476 0.7942 18 6 7.2706 3.2942 2.3915 19 16 8.9360 3.9833 2.2255 20 6 8.8260 5.3262 3.3608 21 1 7.9084 5.5017 3.9025 22 6 9.9193 6.1581 3.5599 23 7 11.0382 5.9433 2.9008 24 14 9.8002 7.5864 4.7578 25 1 8.4441 7.6137 5.3623 26 1 10.8156 7.4203 5.8287 27 1 10.0465 8.8602 4.0353 28 6 5.6882 0.2430 0.5982 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.3916 -2.2660 -0.1085 33 1 1.7355 -2.9143 -1.0813 34 1 1.5131 -2.9282 1.9652 35 1 1.4168 -4.3417 0.8873 36 1 3.6742 -4.1612 1.8786 37 1 3.7428 -3.8984 0.1197 38 1 5.1053 -2.2148 1.3444 39 1 3.6506 -1.6989 2.2320 40 1 3.6488 -0.1152 2.5310 41 1 2.6989 1.1922 1.7516 42 1 4.9740 1.6548 3.2852 43 1 4.4196 2.7457 1.9847 44 1 7.1050 2.9881 3.4244 45 1 6.5358 4.0500 2.1142 46 1 11.8021 6.5249 3.0397 47 1 6.1765 0.3464 -0.3709 48 1 6.0219 -0.6669 1.0969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705301967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -42.929099 kcal Electronic energy + Delta-G solvation = -28143.568121 eV Core-core repulsion = 24325.664094 eV Total energy + Delta-G solvation = -3817.904028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34661 -39.31004 -37.81083 -36.93673 -33.62397 -33.07181 -32.37409 -30.33382 -29.88608 -29.43146 -27.96528 -25.47871 -25.18740 -24.15922 -22.94262 -21.51371 -20.69448 -19.33712 -18.84965 -17.69540 -17.05955 -16.42945 -16.38142 -16.09834 -15.87802 -15.02586 -14.89891 -14.75568 -14.59088 -14.49313 -14.17997 -13.89100 -13.67948 -13.55994 -13.25655 -13.10811 -12.73169 -12.58539 -12.50404 -12.41354 -12.12009 -11.87665 -11.73054 -11.52124 -11.27986 -11.15298 -11.02795 -10.96961 -10.87298 -10.82393 -10.69498 -10.54721 -9.74361 -9.35167 -9.22727 -9.01996 -8.86837 -8.27332 -8.15457 -6.43279 -6.16235 -3.85916 2.27850 2.56337 3.06105 3.20312 3.25464 3.31234 3.36268 3.73378 4.09468 4.23413 4.25844 4.35431 4.40240 4.51621 4.64218 4.66720 4.78346 4.81206 4.88496 4.95190 5.03991 5.08909 5.18730 5.21336 5.26104 5.30669 5.33305 5.40685 5.44674 5.50273 5.60284 5.62525 5.67320 5.70874 5.80883 5.86157 5.92297 5.94016 6.05744 6.13025 6.21939 6.25223 6.50707 6.61321 7.06159 7.65565 7.84728 7.90610 8.41351 8.70216 9.29062 10.91339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.002275 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.804108 B =12302.958034 C =12867.311094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.505 3.495 3 O -0.521 6.521 4 N -0.608 5.608 5 C 0.104 3.896 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.142 4.142 9 C 0.160 3.840 10 H 0.076 0.924 11 C -0.100 4.100 12 H 0.125 0.875 13 C -0.128 4.128 14 C 0.106 3.894 15 N -0.621 5.621 16 C 0.547 3.453 17 O -0.520 6.520 18 C -0.145 4.145 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.105 3.895 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.267 0.733 47 H 0.074 0.926 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.496 -21.578 -4.560 34.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.295 3.705 3 O -0.399 6.399 4 N -0.343 5.343 5 C -0.019 4.019 6 C -0.174 4.174 7 C -0.158 4.158 8 C -0.179 4.179 9 C 0.056 3.944 10 H 0.094 0.906 11 C -0.119 4.119 12 H 0.143 0.857 13 C -0.165 4.165 14 C -0.018 4.018 15 N -0.358 5.358 16 C 0.336 3.664 17 O -0.395 6.395 18 C -0.296 4.296 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.019 4.019 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.528 -21.419 -5.613 33.044 hybrid contribution -1.200 1.141 1.683 2.361 sum -25.729 -20.278 -3.930 32.994 Atomic orbital electron populations 1.22039 0.92351 1.04731 1.04694 1.20730 0.90329 0.83284 0.76169 1.90702 1.68870 1.31867 1.48451 1.48133 1.07051 1.06125 1.72984 1.21848 0.97299 0.83908 0.98806 1.21920 0.96853 0.99697 0.98888 1.21526 0.94825 0.97126 1.02329 1.22207 1.01627 0.94952 0.99152 1.21095 0.79131 0.95819 0.98307 0.90599 1.22947 0.92845 0.95668 1.00453 0.85728 1.23137 0.99418 0.98276 0.95662 1.21965 0.84876 0.99492 0.95445 1.48425 1.12574 1.30883 1.43953 1.19995 0.80499 0.83244 0.82667 1.90692 1.37915 1.67768 1.43106 1.23494 1.07594 0.97616 1.00871 1.85366 1.05876 1.34803 1.57543 1.22908 1.01911 1.15199 1.28041 0.90922 1.24997 0.94515 0.97768 0.96396 1.70035 1.02477 1.37878 1.39956 0.86113 0.78246 0.81017 0.80096 1.19625 1.20602 1.20574 1.22293 0.95241 0.88608 0.95712 0.88951 0.88945 0.90124 0.89257 0.91211 0.91371 0.90692 0.91488 0.91719 0.90083 0.90577 0.91428 0.88494 0.91920 0.91500 0.89439 0.89350 0.92298 0.90769 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 9.64 36.00 0.35 -0.45 16 2 C 0.51 4.09 6.96 -10.99 -0.08 4.02 16 3 O -0.52 -6.20 10.66 5.56 0.06 -6.14 16 4 N -0.61 -4.08 2.96 -165.22 -0.49 -4.57 16 5 C 0.10 0.38 6.29 -3.71 -0.02 0.36 16 6 C -0.14 -0.49 6.08 -26.61 -0.16 -0.65 16 7 C -0.12 -0.59 5.88 -26.67 -0.16 -0.75 16 8 C -0.14 -0.98 4.74 -26.59 -0.13 -1.11 16 9 C 0.16 1.29 2.81 -67.60 -0.19 1.10 16 10 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 11 C -0.10 -1.12 2.11 -88.59 -0.19 -1.30 16 12 H 0.13 1.71 5.87 -52.34 -0.31 1.40 16 13 C -0.13 -1.40 5.30 -24.90 -0.13 -1.53 16 14 C 0.11 1.43 6.49 -3.07 -0.02 1.41 16 15 N -0.62 -10.34 3.33 -170.66 -0.57 -10.91 16 16 C 0.55 11.67 7.87 -10.99 -0.09 11.58 16 17 O -0.52 -12.97 16.12 5.56 0.09 -12.88 16 18 C -0.15 -3.25 5.35 36.01 0.19 -3.05 16 19 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 20 C -0.53 -15.74 9.50 30.94 0.29 -15.45 16 21 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.88 13.22 55.49 0.73 -26.15 16 24 Si 0.92 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.11 1.44 6.28 -2.65 -0.02 1.42 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.18 5.92 -51.93 -0.31 -0.13 16 32 H 0.09 0.17 5.35 -51.93 -0.28 -0.11 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.62 6.45 -51.93 -0.33 0.28 16 39 H 0.08 0.58 5.71 -51.93 -0.30 0.28 16 40 H 0.07 0.66 5.46 -51.93 -0.28 0.37 16 41 H 0.10 1.12 5.56 -51.93 -0.29 0.83 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 45 H 0.09 1.87 8.14 -51.91 -0.42 1.45 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 48 H 0.06 0.77 5.99 -51.93 -0.31 0.46 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -36.93 376.68 -9.61 -46.54 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.44 Total: -2.22 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.44 Total: -2.37 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.32 Total: -41.62 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.15 Total: -19.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.93 -9.61 -46.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705301967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.613 kcal (2) G-P(sol) polarization free energy of solvation -36.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds