Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00252 * 2 1 4 4 O 1.21275 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99864 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47471 * 179.97438 * 5 3 2 7 7 C 1.54266 * 110.03110 * 292.91057 * 6 5 3 8 8 C 1.54970 * 104.15892 * 217.13209 * 7 6 5 9 9 C 1.54888 * 102.77576 * 37.88473 * 8 7 6 10 10 C 1.53865 * 110.03387 * 175.68894 * 6 5 3 11 11 C 1.46500 * 119.99883 * 180.02562 * 2 1 3 12 12 C 1.53501 * 114.20747 * 59.99913 * 11 2 1 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 2 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.08997 * 109.47425 * 269.99969 * 1 2 3 28 28 H 1.08998 * 109.46947 * 30.00222 * 1 2 3 29 29 H 1.08999 * 109.47186 * 150.00105 * 1 2 3 30 30 H 1.09004 * 109.47048 * 299.99757 * 5 3 2 31 31 H 1.09000 * 109.47172 * 59.99779 * 5 3 2 32 32 H 1.09005 * 110.01602 * 54.29637 * 6 5 3 33 33 H 1.09000 * 110.48664 * 335.77521 * 7 6 5 34 34 H 1.09004 * 110.49013 * 98.42440 * 7 6 5 35 35 H 1.08999 * 110.71648 * 279.57770 * 8 7 6 36 36 H 1.08996 * 110.92022 * 156.29251 * 8 7 6 37 37 H 1.08994 * 110.48976 * 203.40475 * 9 8 7 38 38 H 1.09006 * 110.59634 * 80.81681 * 9 8 7 39 39 H 1.09005 * 110.03453 * 238.56970 * 10 6 5 40 40 H 1.08997 * 110.03723 * 359.95167 * 10 6 5 41 41 H 1.09001 * 113.28417 * 193.06610 * 11 2 1 42 42 H 1.09001 * 113.46643 * 105.36573 * 12 11 2 43 43 H 1.09004 * 113.51834 * 334.94016 * 12 11 2 44 44 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 45 45 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 46 46 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 47 47 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 48 48 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 2.3796 3.6352 0.0011 7 6 3.1518 3.6696 1.3361 8 6 3.3165 5.1803 1.6400 9 6 1.9665 5.7740 1.1666 10 6 1.6265 4.9726 -0.1070 11 6 2.1975 -1.2687 -0.0006 12 6 1.9059 -2.1633 -1.2134 13 7 1.9168 -3.3161 -0.3004 14 6 2.1840 -4.6331 -0.4033 15 8 2.5087 -5.1042 -1.4726 16 6 2.0782 -5.5205 0.8101 17 16 2.4950 -7.2212 0.3519 18 6 2.2957 -8.0159 1.9118 19 1 1.9969 -7.4416 2.7762 20 6 2.5167 -9.3812 2.0284 21 7 2.3683 -9.9749 3.1939 22 14 3.0261 -10.3761 0.5316 23 1 4.5075 -10.3965 0.4315 24 1 2.5199 -11.7658 0.6652 25 1 2.4557 -9.7570 -0.6917 26 6 1.5014 -2.4006 0.7730 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7584 2.5302 -0.8892 31 1 0.7591 2.5298 0.8908 32 1 3.0764 3.5308 -0.8307 33 1 2.5754 3.1830 2.1229 34 1 4.1262 3.1936 1.2257 35 1 4.1445 5.6004 1.0691 36 1 3.4598 5.3492 2.7072 37 1 2.0763 6.8329 0.9331 38 1 1.1970 5.6293 1.9251 39 1 1.9583 5.5177 -0.9907 40 1 0.5527 4.7932 -0.1606 41 1 3.2575 -1.1544 0.2258 42 1 2.7144 -2.1807 -1.9443 43 1 0.9321 -1.9777 -1.6667 44 1 1.0595 -5.4879 1.1964 45 1 2.7690 -5.1708 1.5773 46 1 2.5231 -10.9289 3.2754 47 1 0.4207 -2.2770 0.8442 48 1 1.9652 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705319471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -64.701641 kcal Electronic energy + Delta-G solvation = -26677.513161 eV Core-core repulsion = 22858.665005 eV Total energy + Delta-G solvation = -3818.848156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98628 -40.71482 -39.26186 -38.41863 -35.91455 -34.69545 -32.64171 -31.84017 -29.49908 -29.36108 -27.90290 -27.86515 -27.01257 -26.68426 -23.14788 -21.55338 -20.77825 -20.41484 -19.95529 -19.61184 -18.31294 -18.20328 -17.57209 -17.27366 -17.04470 -16.65974 -16.45038 -16.04494 -15.82622 -15.75931 -14.96072 -14.88996 -14.70683 -14.20694 -14.13980 -14.04610 -13.91181 -13.80529 -13.61570 -13.36800 -13.17574 -13.07709 -13.01615 -12.89242 -12.69131 -12.13825 -12.07035 -11.89434 -11.88967 -11.80551 -11.58883 -11.49097 -11.24052 -11.19353 -11.17909 -10.71577 -10.58589 -9.91614 -9.68000 -9.04457 -8.53605 -6.25618 0.87850 1.30044 1.35295 1.39793 1.48344 1.61899 1.72401 2.17438 2.23304 2.63206 2.84550 3.20275 3.34343 3.55643 3.75311 3.77555 3.81368 3.88863 4.04404 4.16619 4.23561 4.34309 4.36075 4.37877 4.43180 4.46933 4.50927 4.62483 4.66059 4.71146 4.75851 4.77003 4.87314 4.92180 4.93670 5.00234 5.05838 5.14071 5.17971 5.29846 5.41407 5.46657 5.53765 5.59309 5.68677 6.09092 6.32789 6.47960 6.91180 6.93739 7.18488 8.58647 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030051 B = 0.001772 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.532012 B =15795.658440 C =16104.355018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.602 5.602 3 C 0.509 3.491 4 O -0.579 6.579 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.115 4.115 8 C -0.130 4.130 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.121 3.879 12 C 0.092 3.908 13 N -0.647 5.647 14 C 0.566 3.434 15 O -0.562 6.562 16 C -0.100 4.100 17 S -0.175 6.175 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.257 1.257 25 H -0.237 1.237 26 C 0.094 3.906 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.278 0.722 47 H 0.124 0.876 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 35.028 -4.975 36.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C 0.299 3.701 4 O -0.458 6.458 5 C -0.163 4.163 6 C -0.098 4.098 7 C -0.152 4.152 8 C -0.168 4.168 9 C -0.160 4.160 10 C -0.154 4.154 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.384 5.384 14 C 0.355 3.645 15 O -0.441 6.441 16 C -0.251 4.251 17 S 0.052 5.948 18 C -0.677 4.677 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.552 5.552 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.161 1.161 26 C -0.029 4.029 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.142 0.858 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.916 33.949 -6.447 35.451 hybrid contribution 0.284 -0.662 1.084 1.302 sum -7.632 33.287 -5.364 34.569 Atomic orbital electron populations 1.22249 0.76434 1.05336 1.04157 1.47816 1.08482 1.03985 1.73143 1.21506 0.87826 0.86449 0.74286 1.90710 1.16303 1.87907 1.50893 1.21955 0.98790 0.88957 1.06602 1.21537 0.96253 0.94210 0.97849 1.22364 0.99710 0.96365 0.96787 1.22554 0.98176 0.95102 1.00934 1.22362 0.96672 0.99431 0.97551 1.22206 1.00976 0.94034 0.98170 1.22532 0.97991 0.82341 0.95601 1.23605 1.03458 0.81032 0.95104 1.49167 1.67973 1.04972 1.16288 1.19484 0.75832 0.80182 0.88994 1.90698 1.48919 1.73554 1.30898 1.23151 1.06928 0.95793 0.99192 1.84743 1.91232 1.02593 1.16252 1.22423 1.53768 0.97034 0.94466 0.91818 1.25534 0.93620 0.97804 0.98839 1.70008 1.48119 1.11963 1.25127 0.85889 0.80071 0.79580 0.80970 1.18826 1.18067 1.16136 1.23757 1.02448 0.83910 0.92785 0.90153 0.87968 0.89974 0.86077 0.86264 0.92596 0.91931 0.93875 0.92279 0.91516 0.91261 0.90799 0.91702 0.89545 0.87010 0.91555 0.86992 0.86691 0.87283 0.91293 0.85831 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 8.92 127.77 1.14 1.32 16 2 N -0.60 -7.08 3.11 -821.41 -2.56 -9.64 16 3 C 0.51 7.88 7.45 87.66 0.65 8.54 16 4 O -0.58 -14.73 14.29 -3.01 -0.04 -14.77 16 5 C -0.12 -0.92 3.38 29.85 0.10 -0.82 16 6 C -0.08 -0.92 2.55 -10.07 -0.03 -0.95 16 7 C -0.11 -1.69 5.40 31.70 0.17 -1.52 16 8 C -0.13 -1.52 6.91 31.91 0.22 -1.30 16 9 C -0.12 -0.96 6.83 31.67 0.22 -0.74 16 10 C -0.12 -0.83 6.46 31.32 0.20 -0.63 16 11 C 0.12 2.07 4.57 45.55 0.21 2.28 16 12 C 0.09 1.83 8.17 83.18 0.68 2.51 16 13 N -0.65 -16.77 3.69 -857.84 -3.16 -19.93 16 14 C 0.57 20.80 8.10 87.66 0.71 21.51 16 15 O -0.56 -25.60 16.64 -3.02 -0.05 -25.65 16 16 C -0.10 -3.90 5.98 71.24 0.43 -3.47 16 17 S -0.17 -8.99 18.55 -56.49 -1.05 -10.04 16 18 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.81 5.50 84.86 0.47 3.28 16 21 N -0.91 -55.60 13.97 21.65 0.30 -55.30 16 22 Si 0.91 45.22 27.74 68.60 1.90 47.12 16 23 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 26 C 0.09 1.52 7.84 83.26 0.65 2.17 16 27 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.10 -0.15 6.44 -2.39 -0.02 -0.16 16 29 H 0.08 0.22 6.17 -2.39 -0.01 0.20 16 30 H 0.12 0.28 7.40 -2.38 -0.02 0.26 16 31 H 0.12 0.37 7.99 -2.39 -0.02 0.35 16 32 H 0.06 0.91 7.95 -2.38 -0.02 0.90 16 33 H 0.06 0.87 7.77 -2.39 -0.02 0.85 16 34 H 0.04 0.89 7.63 -2.38 -0.02 0.87 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.09 0.28 7.67 -2.39 -0.02 0.26 16 41 H 0.11 2.53 7.29 -2.39 -0.02 2.51 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 1.64 6.97 -2.39 -0.02 1.63 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 45 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 46 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.12 1.24 6.57 -2.38 -0.02 1.22 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -81.94 394.65 2.75 -79.19 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.91 Total: 7.13 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.51 Total: 1.89 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -5.42 Total: -84.87 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.09 Total: -40.42 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -81.94 2.75 -79.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705319471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.490 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds