Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.44567 * 118.70946 * 359.73369 * 4 2 1 6 6 C 1.54235 * 109.88436 * 270.78280 * 5 4 2 7 7 C 1.47057 * 110.51466 * 288.38218 * 6 5 4 8 8 C 1.52818 * 114.31960 * 62.83588 * 7 6 5 9 9 C 1.50721 * 109.27789 * 275.71771 * 8 7 6 10 10 C 1.53969 * 110.90312 * 213.02232 * 9 8 7 11 11 C 1.54468 * 104.83048 * 120.08996 * 10 9 8 12 12 N 1.48164 * 104.62267 * 23.84160 * 11 10 9 13 13 C 1.34774 * 127.80478 * 140.68985 * 12 11 10 14 14 O 1.21288 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00108 * 359.96856 * 13 12 11 16 16 S 1.81000 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99986 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46724 * 119.99731 * 21 19 17 24 24 H 1.48499 * 109.47182 * 239.99919 * 21 19 17 25 25 C 1.48241 * 104.39013 * 320.64824 * 12 11 10 26 26 C 1.47641 * 118.70592 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 29 29 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 30 30 H 1.08997 * 109.44920 * 30.70181 * 5 4 2 31 31 H 1.09000 * 109.44950 * 150.62513 * 5 4 2 32 32 H 1.09005 * 109.33213 * 168.07900 * 6 5 4 33 33 H 1.09002 * 109.19079 * 48.59396 * 6 5 4 34 34 H 1.08999 * 108.51423 * 301.58477 * 7 6 5 35 35 H 1.08998 * 108.51294 * 184.08750 * 7 6 5 36 36 H 1.09000 * 109.50515 * 155.77792 * 8 7 6 37 37 H 1.09003 * 109.50309 * 35.65809 * 8 7 6 38 38 H 1.08996 * 110.36588 * 238.92327 * 10 9 8 39 39 H 1.08998 * 110.37379 * 1.13960 * 10 9 8 40 40 H 1.08995 * 110.40495 * 142.62957 * 11 10 9 41 41 H 1.08998 * 110.40279 * 264.93787 * 11 10 9 42 42 H 1.08989 * 109.47222 * 300.00504 * 15 13 12 43 43 H 1.09004 * 109.46725 * 60.00700 * 15 13 12 44 44 H 0.97005 * 120.00244 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.41701 * 280.44162 * 25 12 11 46 46 H 1.09000 * 110.41813 * 157.98055 * 25 12 11 47 47 H 1.09000 * 108.96976 * 258.62306 * 26 4 2 48 48 H 1.08994 * 108.97114 * 17.30845 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4300 -2.4026 0.0070 6 6 1.1464 -2.8365 1.4596 7 6 2.3795 -3.3098 2.1061 8 6 3.4689 -2.2463 2.2384 9 6 4.2574 -2.1794 0.9557 10 6 5.7300 -1.8260 1.2339 11 6 6.5352 -3.0217 0.6790 12 7 5.6482 -3.6290 -0.3407 13 6 5.9950 -4.1386 -1.5392 14 8 5.1456 -4.6051 -2.2686 15 6 7.4382 -4.1287 -1.9732 16 16 7.5793 -4.8756 -3.6159 17 6 9.3179 -4.7373 -3.8665 18 1 9.9394 -4.2896 -3.1049 19 6 9.8887 -5.2026 -5.0429 20 7 9.1313 -5.7477 -5.9713 21 14 11.7319 -5.0553 -5.3089 22 1 12.3530 -4.4111 -4.1239 23 1 12.3142 -6.4081 -5.4984 24 1 11.9935 -4.2302 -6.5156 25 6 4.2934 -3.5504 0.2557 26 6 3.6569 -1.1339 0.0011 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 0.4842 -2.2551 -0.5144 31 1 2.0048 -3.1793 -0.4974 32 1 0.4096 -3.6398 1.4589 33 1 0.7515 -1.9869 2.0168 34 1 2.7772 -4.1422 1.5255 35 1 2.1298 -3.6752 3.1022 36 1 4.1342 -2.5073 3.0614 37 1 3.0096 -1.2773 2.4342 38 1 6.0050 -0.9090 0.7128 39 1 5.8983 -1.7176 2.3053 40 1 7.4613 -2.6759 0.2199 41 1 6.7496 -3.7368 1.4732 42 1 7.7996 -3.1011 -2.0094 43 1 8.0354 -4.6991 -1.2618 44 1 9.5303 -6.0733 -6.7934 45 1 4.1500 -4.3515 0.9807 46 1 3.5319 -3.5999 -0.5226 47 1 4.0161 -1.3294 -1.0093 48 1 3.9888 -0.1421 0.3077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705377178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -57.022933 kcal Electronic energy + Delta-G solvation = -28485.620585 eV Core-core repulsion = 24667.105403 eV Total energy + Delta-G solvation = -3818.515182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37619 -39.58866 -38.21520 -36.50199 -34.13942 -33.14960 -32.43819 -30.46655 -29.69771 -29.45839 -27.44602 -26.04674 -25.52386 -24.93423 -23.25785 -21.52736 -19.58743 -19.18800 -19.00300 -17.72436 -17.25845 -16.89376 -16.63142 -16.04341 -15.82035 -15.13084 -14.89323 -14.81299 -14.56238 -14.40078 -14.04422 -13.98026 -13.76359 -13.53546 -13.06726 -12.94201 -12.70892 -12.52858 -12.50057 -12.35844 -12.32528 -12.11900 -11.78828 -11.73463 -11.41435 -11.19963 -11.07688 -11.02391 -10.80957 -10.76115 -10.61935 -10.58320 -9.98800 -9.81410 -9.43165 -9.08343 -8.89756 -8.58359 -8.24432 -6.51432 -6.22722 -3.93373 2.38750 2.74839 2.86672 3.02533 3.21064 3.25477 3.30639 3.59100 4.07378 4.18003 4.20510 4.34039 4.40664 4.48929 4.53374 4.69521 4.87144 4.92902 4.95357 4.97591 4.99768 5.11361 5.12656 5.18023 5.20187 5.23055 5.34379 5.46670 5.50210 5.53244 5.58905 5.62268 5.64858 5.68095 5.72377 5.79960 5.81629 5.88890 5.89604 5.92656 6.05338 6.12235 6.25591 6.39639 7.13382 7.58947 7.68796 7.93511 8.34493 8.52589 9.22794 10.84767 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002517 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.996825 B =11122.438846 C =11359.336097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.602 5.602 5 C 0.096 3.904 6 C -0.134 4.134 7 C -0.138 4.138 8 C -0.097 4.097 9 C -0.082 4.082 10 C -0.124 4.124 11 C 0.101 3.899 12 N -0.631 5.631 13 C 0.554 3.446 14 O -0.517 6.517 15 C -0.147 4.147 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.106 3.894 26 C 0.124 3.876 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 7.588 20.361 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.427 6.427 4 N -0.335 5.335 5 C -0.028 4.028 6 C -0.173 4.173 7 C -0.176 4.176 8 C -0.135 4.135 9 C -0.084 4.084 10 C -0.163 4.163 11 C -0.022 4.022 12 N -0.368 5.368 13 C 0.343 3.657 14 O -0.391 6.391 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.016 4.016 26 C 0.002 3.998 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.071 7.291 18.947 26.525 hybrid contribution 2.173 0.510 0.721 2.346 sum -14.898 7.801 19.668 25.877 Atomic orbital electron populations 1.21989 0.91953 1.05264 1.04180 1.20891 0.90701 0.83291 0.75519 1.90709 1.70784 1.31268 1.49908 1.47703 1.06600 1.06143 1.73057 1.21739 0.96966 0.86971 0.97074 1.21161 0.98330 1.01619 0.96174 1.20749 0.95645 0.99621 1.01546 1.21134 0.96962 0.99853 0.95552 1.21377 0.95775 0.95374 0.95868 1.22685 0.92834 0.98846 1.01908 1.22371 0.94459 0.94299 0.91119 1.49088 1.08640 1.62024 1.17035 1.20001 0.90841 0.76229 0.78591 1.90706 1.51953 1.44679 1.51767 1.23503 0.94259 1.05480 1.06480 1.85394 1.10439 1.77490 1.10111 1.22891 0.92405 1.46587 1.06321 0.90891 1.24995 0.99188 0.94520 0.94901 1.70027 1.35493 1.37516 1.07240 0.86113 0.83032 0.78014 0.78318 1.19611 1.20560 1.20548 1.22829 0.86044 0.95720 0.97018 1.21994 0.78355 1.00003 0.99481 0.89215 0.89396 0.89292 0.89998 0.89361 0.90506 0.91842 0.90430 0.92031 0.91184 0.91430 0.90362 0.89774 0.89818 0.91054 0.89305 0.89300 0.92230 0.90365 0.89518 0.91351 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 8.81 36.01 0.32 -0.80 16 2 C 0.51 5.41 7.74 -10.98 -0.08 5.33 16 3 O -0.55 -8.24 16.37 5.56 0.09 -8.15 16 4 N -0.60 -5.74 2.29 -173.02 -0.40 -6.13 16 5 C 0.10 0.68 5.06 -4.43 -0.02 0.66 16 6 C -0.13 -0.74 5.59 -28.94 -0.16 -0.90 16 7 C -0.14 -0.85 4.94 -29.68 -0.15 -1.00 16 8 C -0.10 -0.68 4.88 -27.97 -0.14 -0.82 16 9 C -0.08 -0.72 0.67 -154.23 -0.10 -0.82 16 10 C -0.12 -1.02 6.20 -25.46 -0.16 -1.18 16 11 C 0.10 1.02 6.92 -2.36 -0.02 1.00 16 12 N -0.63 -8.72 3.32 -169.42 -0.56 -9.28 16 13 C 0.55 10.53 7.93 -10.98 -0.09 10.44 16 14 O -0.52 -11.76 16.13 5.55 0.09 -11.67 16 15 C -0.15 -3.00 5.14 36.01 0.18 -2.81 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.11 1.16 4.24 -2.57 -0.01 1.15 16 26 C 0.12 1.33 4.69 -3.01 -0.01 1.32 16 27 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.09 0.39 7.10 -51.93 -0.37 0.02 16 29 H 0.09 0.45 7.32 -51.93 -0.38 0.07 16 30 H 0.08 0.44 6.26 -51.93 -0.33 0.12 16 31 H 0.09 0.74 5.15 -51.93 -0.27 0.48 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.34 7.29 -51.93 -0.38 -0.03 16 34 H 0.08 0.53 4.60 -51.93 -0.24 0.29 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.43 7.42 -51.93 -0.39 0.04 16 37 H 0.07 0.54 7.55 -51.93 -0.39 0.15 16 38 H 0.08 0.68 7.49 -51.93 -0.39 0.29 16 39 H 0.08 0.53 7.34 -51.93 -0.38 0.15 16 40 H 0.08 0.86 7.31 -51.93 -0.38 0.48 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.70 7.95 -51.92 -0.41 1.28 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.08 0.76 5.96 -51.93 -0.31 0.45 16 46 H 0.09 1.07 4.87 -51.93 -0.25 0.82 16 47 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 48 H 0.09 1.10 6.63 -51.93 -0.34 0.75 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -36.48 375.59 -9.14 -45.61 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.28 Total: -1.79 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.24 Total: -1.35 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.22 Total: -40.85 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.48 -9.14 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705377178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.410 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds