Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.44567 * 118.70946 * 359.73369 * 4 2 1 6 6 C 1.54235 * 109.88436 * 270.78280 * 5 4 2 7 7 C 1.47057 * 110.51466 * 288.38218 * 6 5 4 8 8 C 1.52818 * 114.31960 * 62.83588 * 7 6 5 9 9 C 1.50721 * 109.27789 * 275.71771 * 8 7 6 10 10 C 1.53969 * 110.90312 * 213.02232 * 9 8 7 11 11 C 1.54468 * 104.83048 * 120.08996 * 10 9 8 12 12 N 1.48164 * 104.62267 * 23.84160 * 11 10 9 13 13 C 1.34774 * 127.80478 * 140.68985 * 12 11 10 14 14 O 1.21288 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00108 * 359.96856 * 13 12 11 16 16 S 1.81000 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99986 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46724 * 119.99731 * 21 19 17 24 24 H 1.48499 * 109.47182 * 239.99919 * 21 19 17 25 25 C 1.48241 * 104.39013 * 320.64824 * 12 11 10 26 26 C 1.47641 * 118.70592 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 29 29 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 30 30 H 1.08997 * 109.44920 * 30.70181 * 5 4 2 31 31 H 1.09000 * 109.44950 * 150.62513 * 5 4 2 32 32 H 1.09005 * 109.33213 * 168.07900 * 6 5 4 33 33 H 1.09002 * 109.19079 * 48.59396 * 6 5 4 34 34 H 1.08999 * 108.51423 * 301.58477 * 7 6 5 35 35 H 1.08998 * 108.51294 * 184.08750 * 7 6 5 36 36 H 1.09000 * 109.50515 * 155.77792 * 8 7 6 37 37 H 1.09003 * 109.50309 * 35.65809 * 8 7 6 38 38 H 1.08996 * 110.36588 * 238.92327 * 10 9 8 39 39 H 1.08998 * 110.37379 * 1.13960 * 10 9 8 40 40 H 1.08995 * 110.40495 * 142.62957 * 11 10 9 41 41 H 1.08998 * 110.40279 * 264.93787 * 11 10 9 42 42 H 1.08989 * 109.47222 * 300.00504 * 15 13 12 43 43 H 1.09004 * 109.46725 * 60.00700 * 15 13 12 44 44 H 0.97005 * 120.00244 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.41701 * 280.44162 * 25 12 11 46 46 H 1.09000 * 110.41813 * 157.98055 * 25 12 11 47 47 H 1.09000 * 108.96976 * 258.62306 * 26 4 2 48 48 H 1.08994 * 108.97114 * 17.30845 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4300 -2.4026 0.0070 6 6 1.1464 -2.8365 1.4596 7 6 2.3795 -3.3098 2.1061 8 6 3.4689 -2.2463 2.2384 9 6 4.2574 -2.1794 0.9557 10 6 5.7300 -1.8260 1.2339 11 6 6.5352 -3.0217 0.6790 12 7 5.6482 -3.6290 -0.3407 13 6 5.9950 -4.1386 -1.5392 14 8 5.1456 -4.6051 -2.2686 15 6 7.4382 -4.1287 -1.9732 16 16 7.5793 -4.8756 -3.6159 17 6 9.3179 -4.7373 -3.8665 18 1 9.9394 -4.2896 -3.1049 19 6 9.8887 -5.2026 -5.0429 20 7 9.1313 -5.7477 -5.9713 21 14 11.7319 -5.0553 -5.3089 22 1 12.3530 -4.4111 -4.1239 23 1 12.3142 -6.4081 -5.4984 24 1 11.9935 -4.2302 -6.5156 25 6 4.2934 -3.5504 0.2557 26 6 3.6569 -1.1339 0.0011 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 0.4842 -2.2551 -0.5144 31 1 2.0048 -3.1793 -0.4974 32 1 0.4096 -3.6398 1.4589 33 1 0.7515 -1.9869 2.0168 34 1 2.7772 -4.1422 1.5255 35 1 2.1298 -3.6752 3.1022 36 1 4.1342 -2.5073 3.0614 37 1 3.0096 -1.2773 2.4342 38 1 6.0050 -0.9090 0.7128 39 1 5.8983 -1.7176 2.3053 40 1 7.4613 -2.6759 0.2199 41 1 6.7496 -3.7368 1.4732 42 1 7.7996 -3.1011 -2.0094 43 1 8.0354 -4.6991 -1.2618 44 1 9.5303 -6.0733 -6.7934 45 1 4.1500 -4.3515 0.9807 46 1 3.5319 -3.5999 -0.5226 47 1 4.0161 -1.3294 -1.0093 48 1 3.9888 -0.1421 0.3077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705377178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = -81.160906 kcal Electronic energy + Delta-G solvation = -28486.667286 eV Core-core repulsion = 24667.105403 eV Total energy + Delta-G solvation = -3819.561883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19650 -40.66324 -39.38568 -37.42194 -34.92007 -34.60653 -34.04199 -31.37901 -30.97855 -30.20046 -28.31373 -27.68290 -26.82355 -25.82465 -24.05997 -22.24044 -20.81678 -20.02017 -19.81234 -19.51893 -18.20050 -17.97633 -17.61314 -16.98793 -16.90473 -16.72594 -16.50605 -15.77783 -15.76354 -15.45169 -15.07432 -14.89118 -14.79130 -14.55643 -14.23327 -13.87767 -13.64977 -13.61240 -13.33330 -13.25109 -13.16270 -13.08813 -13.01694 -12.93146 -12.74426 -12.62390 -12.41036 -12.14366 -11.94114 -11.72616 -11.37153 -11.26486 -11.22610 -11.17652 -10.96877 -10.83285 -10.30499 -9.73427 -9.69630 -8.69892 -8.36719 -6.15297 1.21978 1.40220 1.43303 1.54290 1.55610 1.57907 2.00555 2.06055 2.25247 2.97539 3.18285 3.34592 3.43733 3.62794 3.72668 3.82431 3.90234 3.99891 4.11925 4.16315 4.20914 4.21923 4.36614 4.40129 4.43760 4.45107 4.52541 4.58172 4.61685 4.67664 4.74108 4.77559 4.88592 4.92831 4.96148 5.08461 5.11610 5.12588 5.22007 5.26386 5.35183 5.39896 5.40883 5.48906 5.62504 6.18035 6.38987 6.41778 7.04564 7.09357 7.13000 8.72839 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002517 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.996825 B =11122.438846 C =11359.336097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.498 3.502 3 O -0.602 6.602 4 N -0.599 5.599 5 C 0.089 3.911 6 C -0.128 4.128 7 C -0.139 4.139 8 C -0.092 4.092 9 C -0.068 4.068 10 C -0.119 4.119 11 C 0.093 3.907 12 N -0.624 5.624 13 C 0.552 3.448 14 O -0.567 6.567 15 C -0.120 4.120 16 S -0.150 6.150 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.274 1.274 25 C 0.105 3.895 26 C 0.126 3.874 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.133 7.691 23.558 29.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.484 6.484 4 N -0.331 5.331 5 C -0.033 4.033 6 C -0.167 4.167 7 C -0.176 4.176 8 C -0.129 4.129 9 C -0.070 4.070 10 C -0.157 4.157 11 C -0.029 4.029 12 N -0.359 5.359 13 C 0.340 3.660 14 O -0.446 6.446 15 C -0.271 4.271 16 S 0.077 5.923 17 C -0.692 4.692 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.016 4.016 26 C 0.003 3.997 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.052 7.391 22.212 28.962 hybrid contribution 2.071 0.519 -0.185 2.143 sum -14.981 7.910 22.027 27.789 Atomic orbital electron populations 1.22010 0.88355 1.05923 1.06257 1.21715 0.92467 0.82598 0.74339 1.90680 1.72131 1.33071 1.52538 1.47810 1.06113 1.06982 1.72168 1.21965 0.97163 0.85346 0.98869 1.21139 0.98634 1.02486 0.94393 1.20759 0.95527 0.98901 1.02429 1.21128 0.97322 0.99921 0.94560 1.21294 0.96522 0.93075 0.96111 1.22722 0.91722 0.97560 1.03705 1.22734 0.94049 0.95458 0.90629 1.49027 1.11053 1.59957 1.15869 1.19676 0.89678 0.76716 0.79905 1.90681 1.52710 1.47442 1.53756 1.23298 0.96186 1.05524 1.02130 1.85561 1.11474 1.79043 1.16192 1.23207 0.92377 1.46720 1.06929 0.90006 1.26140 1.04873 0.93768 0.94388 1.70188 1.38022 1.38610 1.07931 0.84893 0.75957 0.78338 0.78681 1.18028 1.19767 1.19962 1.23083 0.83887 0.97776 0.96892 1.21846 0.79705 0.99981 0.98173 0.89395 0.86644 0.87557 0.87978 0.90959 0.88524 0.91111 0.91222 0.90303 0.89186 0.92132 0.91134 0.86519 0.89910 0.88272 0.87991 0.87470 0.91953 0.88082 0.91251 0.94757 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.81 71.24 0.63 -1.20 16 2 C 0.50 10.53 7.74 87.66 0.68 11.21 16 3 O -0.60 -18.74 16.37 -3.03 -0.05 -18.79 16 4 N -0.60 -11.27 2.29 -819.72 -1.88 -13.15 16 5 C 0.09 1.15 5.06 87.16 0.44 1.59 16 6 C -0.13 -1.02 5.59 29.17 0.16 -0.85 16 7 C -0.14 -1.26 4.94 28.69 0.14 -1.12 16 8 C -0.09 -1.01 4.88 29.79 0.15 -0.86 16 9 C -0.07 -1.10 0.67 -52.00 -0.04 -1.14 16 10 C -0.12 -1.68 6.20 31.42 0.19 -1.49 16 11 C 0.09 1.66 6.92 86.56 0.60 2.26 16 12 N -0.62 -16.85 3.32 -808.31 -2.68 -19.54 16 13 C 0.55 21.38 7.93 87.66 0.70 22.08 16 14 O -0.57 -27.04 16.13 -3.05 -0.05 -27.09 16 15 C -0.12 -4.96 5.14 71.24 0.37 -4.60 16 16 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 17 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C 0.10 2.18 4.24 86.37 0.37 2.55 16 26 C 0.13 2.79 4.69 86.43 0.41 3.20 16 27 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 28 H 0.12 0.64 7.10 -2.39 -0.02 0.62 16 29 H 0.11 0.82 7.32 -2.38 -0.02 0.80 16 30 H 0.10 0.89 6.26 -2.39 -0.01 0.87 16 31 H 0.07 1.21 5.15 -2.39 -0.01 1.19 16 32 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.07 0.51 7.29 -2.39 -0.02 0.49 16 34 H 0.07 0.76 4.60 -2.39 -0.01 0.75 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.69 7.42 -2.39 -0.02 0.67 16 37 H 0.06 0.81 7.55 -2.39 -0.02 0.79 16 38 H 0.07 1.15 7.49 -2.39 -0.02 1.13 16 39 H 0.12 0.97 7.34 -2.39 -0.02 0.96 16 40 H 0.08 1.52 7.31 -2.39 -0.02 1.51 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 3.90 7.95 -2.40 -0.02 3.88 16 43 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 44 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 45 H 0.10 1.72 5.96 -2.39 -0.01 1.71 16 46 H 0.07 1.75 4.87 -2.39 -0.01 1.73 16 47 H 0.03 0.98 7.95 -2.39 -0.02 0.96 16 48 H 0.08 1.96 6.63 -2.39 -0.02 1.94 16 Total: -1.00 -84.98 375.59 3.36 -81.61 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.97 Total: 14.67 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.90 Total: 2.05 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -4.27 Total: -88.76 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.10 Total: -45.88 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -84.98 3.36 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705377178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.451 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds