Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47169 * 2 1 4 4 O 1.42896 * 109.47095 * 239.99340 * 2 1 3 5 5 C 1.35900 * 116.99872 * 87.12859 * 4 2 1 6 6 C 1.38769 * 120.03976 * 355.42291 * 5 4 2 7 7 C 1.38138 * 119.99163 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.07875 * 359.97438 * 7 6 5 9 9 C 1.38469 * 120.08785 * 0.04339 * 8 7 6 10 10 F 1.35106 * 119.99537 * 179.97438 * 9 8 7 11 11 C 1.38387 * 120.00651 * 359.70123 * 9 8 7 12 12 C 1.50700 * 109.46966 * 119.99622 * 2 1 3 13 13 O 1.21280 * 120.00446 * 107.12119 * 12 2 1 14 14 N 1.34774 * 119.99955 * 287.11855 * 12 2 1 15 15 C 1.46501 * 120.00347 * 5.85413 * 14 12 2 16 16 C 1.53005 * 109.47122 * 96.06175 * 15 14 12 17 17 O 1.42905 * 109.46702 * 67.77675 * 16 15 14 18 18 C 1.46507 * 120.00139 * 185.85148 * 14 12 2 19 19 C 1.53000 * 109.46729 * 90.00115 * 18 14 12 20 20 N 1.46505 * 109.46923 * 180.02562 * 19 18 14 21 21 C 1.36931 * 120.00078 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00077 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99944 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47324 * 60.00313 * 25 23 21 27 27 H 1.48500 * 109.46958 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47411 * 300.00053 * 25 23 21 29 29 H 1.08998 * 109.47035 * 190.20861 * 1 2 3 30 30 H 1.09004 * 109.46675 * 70.21145 * 1 2 3 31 31 H 1.08997 * 109.46886 * 310.21134 * 1 2 3 32 32 H 1.08000 * 120.00474 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.95925 * 179.97438 * 7 6 5 34 34 H 1.08008 * 119.95094 * 180.02562 * 8 7 6 35 35 H 1.07994 * 120.04057 * 180.28108 * 11 9 8 36 36 H 1.08990 * 109.47399 * 216.06633 * 15 14 12 37 37 H 1.09000 * 109.46864 * 336.06419 * 15 14 12 38 38 H 1.08999 * 109.47010 * 187.77201 * 16 15 14 39 39 H 1.08998 * 109.47233 * 307.77401 * 16 15 14 40 40 H 0.96701 * 113.99505 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46966 * 210.00056 * 18 14 12 42 42 H 1.09004 * 109.47150 * 330.00344 * 18 14 12 43 43 H 1.09001 * 109.47349 * 299.99708 * 19 18 14 44 44 H 1.09002 * 109.47483 * 60.00601 * 19 18 14 45 45 H 0.97000 * 119.99569 * 359.97438 * 20 19 18 46 46 H 0.97002 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1548 0.0725 -2.2927 6 6 1.7591 1.4026 -2.3018 7 6 1.9109 2.1604 -3.4467 8 6 2.4574 1.5955 -4.5841 9 6 2.8530 0.2685 -4.5788 10 9 3.3863 -0.2818 -5.6915 11 6 2.7074 -0.4925 -3.4321 12 6 2.0323 -0.7103 1.2305 13 8 2.5260 -1.8140 1.1347 14 7 1.9330 -0.1191 2.4376 15 6 1.2230 1.1551 2.5730 16 6 -0.2178 0.8917 3.0156 17 8 -0.2200 0.3788 4.3494 18 6 2.5351 -0.7508 3.6144 19 6 3.9747 -0.2590 3.7767 20 7 4.5770 -0.8911 4.9532 21 6 5.8695 -0.6010 5.3001 22 1 6.4448 0.0942 4.7066 23 6 6.4399 -1.1995 6.4150 24 7 5.7387 -2.0463 7.1386 25 14 8.2034 -0.8042 6.8878 26 1 8.3293 0.6507 7.1578 27 1 8.5722 -1.5680 8.1067 28 1 9.1108 -1.1813 5.7745 29 1 -0.3633 -1.0114 0.1821 30 1 -0.3633 0.3479 -0.9670 31 1 -0.3633 0.6635 0.7848 32 1 1.3325 1.8452 -1.4138 33 1 1.6024 3.1953 -3.4533 34 1 2.5755 2.1900 -5.4780 35 1 3.0200 -1.5262 -3.4260 36 1 1.7246 1.7732 3.3176 37 1 1.2196 1.6728 1.6138 38 1 -0.7837 1.8227 2.9833 39 1 -0.6763 0.1643 2.3458 40 1 -1.1025 0.1881 4.6959 41 1 1.9593 -0.4886 4.5020 42 1 2.5331 -1.8333 3.4867 43 1 4.5505 -0.5212 2.8891 44 1 3.9767 0.8235 3.9045 45 1 4.0599 -1.5146 5.4868 46 1 6.1375 -2.4648 7.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717051679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -109.920049 kcal Electronic energy + Delta-G solvation = -29666.861021 eV Core-core repulsion = 25279.838872 eV Total energy + Delta-G solvation = -4387.022149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.23470 -41.07180 -39.71870 -37.67695 -37.21213 -35.59640 -34.48152 -32.78167 -31.37377 -30.75031 -30.09884 -29.52437 -27.65718 -25.09336 -23.72213 -23.44995 -23.22542 -22.41784 -21.30313 -19.31214 -18.95010 -17.95652 -17.48118 -17.13900 -16.78374 -16.62823 -16.28860 -16.20961 -15.92340 -15.57078 -15.19432 -14.66379 -14.56633 -14.32889 -14.10264 -13.81842 -13.73303 -13.47178 -13.30610 -13.17761 -12.88270 -12.82066 -12.59042 -12.42724 -12.26855 -12.01460 -11.76028 -11.48239 -11.33419 -11.17460 -10.90669 -10.86586 -10.60769 -10.21874 -10.10696 -9.77078 -9.63263 -9.27522 -8.82300 -8.67969 -8.58320 -6.88380 -5.71233 -3.00370 0.73097 0.89814 2.24224 2.53125 3.17545 3.19694 3.48140 3.52084 3.53605 3.92013 3.97891 4.05988 4.25855 4.38247 4.46381 4.57727 4.62323 4.65343 4.74065 4.82986 4.86886 4.97369 4.98924 5.09257 5.15711 5.17587 5.46652 5.54339 5.58717 5.64443 5.69975 5.76970 5.82887 5.90076 5.92241 6.07428 6.23356 6.29991 6.52656 6.75168 6.91736 6.96154 7.34574 7.46702 7.73750 8.13378 8.47203 9.57980 10.14664 10.49987 11.51635 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.002613 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.545241 B =10714.527051 C =12498.365711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.065 3.935 3 H 0.100 0.900 4 O -0.278 6.278 5 C 0.164 3.836 6 C -0.225 4.225 7 C -0.049 4.049 8 C -0.195 4.195 9 C 0.140 3.860 10 F -0.134 7.134 11 C -0.187 4.187 12 C 0.513 3.487 13 O -0.505 6.505 14 N -0.594 5.594 15 C 0.099 3.901 16 C 0.051 3.949 17 O -0.560 6.560 18 C 0.110 3.890 19 C 0.143 3.857 20 N -0.729 5.729 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.378 0.622 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 11.951 -20.566 30.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.005 3.995 3 H 0.117 0.883 4 O -0.190 6.190 5 C 0.117 3.883 6 C -0.243 4.243 7 C -0.067 4.067 8 C -0.214 4.214 9 C 0.121 3.879 10 F -0.112 7.112 11 C -0.207 4.207 12 C 0.298 3.702 13 O -0.378 6.378 14 N -0.329 5.329 15 C -0.024 4.024 16 C -0.028 4.028 17 O -0.365 6.365 18 C -0.011 4.011 19 C 0.014 3.986 20 N -0.373 5.373 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.364 11.227 -20.684 29.247 hybrid contribution 0.232 0.142 0.353 0.445 sum -17.132 11.368 -20.331 28.915 Atomic orbital electron populations 1.22612 0.92564 1.04790 1.04223 1.22336 0.95878 0.97081 0.84172 0.88280 1.86250 1.80402 1.35977 1.16325 1.18686 0.93204 0.89831 0.86529 1.21357 1.08491 0.93754 1.00724 1.20774 0.95071 0.99672 0.91148 1.21056 1.05611 0.93899 1.00829 1.17285 0.96396 0.91709 0.82502 1.91528 1.83582 1.85933 1.50193 1.20306 1.06988 1.02491 0.90906 1.19972 0.79868 0.86492 0.83859 1.90785 1.42889 1.18884 1.85292 1.47704 1.54694 1.22737 1.07760 1.21810 0.91719 0.86321 1.02574 1.22910 0.97072 0.97914 0.84913 1.86608 1.33828 1.86993 1.29086 1.21811 0.94537 0.98738 0.86020 1.20907 0.90883 0.95507 0.91289 1.42176 1.12981 1.53167 1.29003 1.19156 0.89025 1.21058 1.07698 0.91304 1.24746 0.98391 0.99654 0.98185 1.69656 1.36412 1.32801 1.19306 0.86240 0.84676 0.77512 0.77595 1.21288 1.21646 1.21247 0.90428 0.90397 0.89513 0.84612 0.84540 0.84565 0.83605 0.88548 0.89199 0.92586 0.92835 0.77446 0.88752 0.89850 0.96323 0.96529 0.78183 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.25 37.16 0.31 -1.00 16 2 C 0.07 0.69 1.79 -27.88 -0.05 0.64 16 3 H 0.10 0.78 4.93 -51.93 -0.26 0.53 16 4 O -0.28 -3.59 9.36 -39.00 -0.36 -3.96 16 5 C 0.16 1.76 6.58 -39.23 -0.26 1.50 16 6 C -0.22 -1.76 8.36 -39.42 -0.33 -2.09 16 7 C -0.05 -0.32 10.04 -39.61 -0.40 -0.72 16 8 C -0.19 -1.51 10.02 -39.49 -0.40 -1.91 16 9 C 0.14 1.39 7.30 -39.44 -0.29 1.10 16 10 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 11 C -0.19 -2.04 9.97 -39.37 -0.39 -2.43 16 12 C 0.51 7.72 6.99 -10.99 -0.08 7.64 16 13 O -0.51 -10.24 16.10 -14.01 -0.23 -10.47 16 14 N -0.59 -8.22 2.47 -173.68 -0.43 -8.65 16 15 C 0.10 0.91 5.33 -4.04 -0.02 0.89 16 16 C 0.05 0.37 6.37 37.16 0.24 0.61 16 17 O -0.56 -5.50 12.07 -35.23 -0.43 -5.93 16 18 C 0.11 1.98 5.43 -4.04 -0.02 1.96 16 19 C 0.14 3.11 6.58 -4.04 -0.03 3.09 16 20 N -0.73 -19.58 5.60 -59.90 -0.34 -19.92 16 21 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 25 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.08 0.45 7.38 -51.93 -0.38 0.06 16 31 H 0.09 0.41 3.99 -51.93 -0.21 0.20 16 32 H 0.14 0.74 5.67 -52.49 -0.30 0.44 16 33 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.09 0.51 5.37 -51.93 -0.28 0.23 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.05 0.36 5.96 -51.93 -0.31 0.05 16 40 H 0.38 2.07 9.12 45.56 0.42 2.48 16 41 H 0.09 1.66 6.64 -51.93 -0.34 1.32 16 42 H 0.08 1.69 7.35 -51.93 -0.38 1.30 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -38.00 380.33 -7.55 -45.55 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.28 Total: 7.68 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.96 Total: 1.63 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.04 Total: -56.93 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.02 Total: -20.35 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.00 -7.55 -45.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717051679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.370 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds