Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47169 * 2 1 4 4 O 1.42896 * 109.47095 * 239.99340 * 2 1 3 5 5 C 1.35900 * 116.99872 * 87.12859 * 4 2 1 6 6 C 1.38769 * 120.03976 * 355.42291 * 5 4 2 7 7 C 1.38138 * 119.99163 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.07875 * 359.97438 * 7 6 5 9 9 C 1.38469 * 120.08785 * 0.04339 * 8 7 6 10 10 F 1.35106 * 119.99537 * 179.97438 * 9 8 7 11 11 C 1.38387 * 120.00651 * 359.70123 * 9 8 7 12 12 C 1.50700 * 109.46966 * 119.99622 * 2 1 3 13 13 O 1.21280 * 120.00446 * 107.12119 * 12 2 1 14 14 N 1.34774 * 119.99955 * 287.11855 * 12 2 1 15 15 C 1.46501 * 120.00347 * 5.85413 * 14 12 2 16 16 C 1.53005 * 109.47122 * 96.06175 * 15 14 12 17 17 O 1.42905 * 109.46702 * 67.77675 * 16 15 14 18 18 C 1.46507 * 120.00139 * 185.85148 * 14 12 2 19 19 C 1.53000 * 109.46729 * 90.00115 * 18 14 12 20 20 N 1.46505 * 109.46923 * 180.02562 * 19 18 14 21 21 C 1.36931 * 120.00078 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00077 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99944 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47324 * 60.00313 * 25 23 21 27 27 H 1.48500 * 109.46958 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47411 * 300.00053 * 25 23 21 29 29 H 1.08998 * 109.47035 * 190.20861 * 1 2 3 30 30 H 1.09004 * 109.46675 * 70.21145 * 1 2 3 31 31 H 1.08997 * 109.46886 * 310.21134 * 1 2 3 32 32 H 1.08000 * 120.00474 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.95925 * 179.97438 * 7 6 5 34 34 H 1.08008 * 119.95094 * 180.02562 * 8 7 6 35 35 H 1.07994 * 120.04057 * 180.28108 * 11 9 8 36 36 H 1.08990 * 109.47399 * 216.06633 * 15 14 12 37 37 H 1.09000 * 109.46864 * 336.06419 * 15 14 12 38 38 H 1.08999 * 109.47010 * 187.77201 * 16 15 14 39 39 H 1.08998 * 109.47233 * 307.77401 * 16 15 14 40 40 H 0.96701 * 113.99505 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46966 * 210.00056 * 18 14 12 42 42 H 1.09004 * 109.47150 * 330.00344 * 18 14 12 43 43 H 1.09001 * 109.47349 * 299.99708 * 19 18 14 44 44 H 1.09002 * 109.47483 * 60.00601 * 19 18 14 45 45 H 0.97000 * 119.99569 * 359.97438 * 20 19 18 46 46 H 0.97002 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1548 0.0725 -2.2927 6 6 1.7591 1.4026 -2.3018 7 6 1.9109 2.1604 -3.4467 8 6 2.4574 1.5955 -4.5841 9 6 2.8530 0.2685 -4.5788 10 9 3.3863 -0.2818 -5.6915 11 6 2.7074 -0.4925 -3.4321 12 6 2.0323 -0.7103 1.2305 13 8 2.5260 -1.8140 1.1347 14 7 1.9330 -0.1191 2.4376 15 6 1.2230 1.1551 2.5730 16 6 -0.2178 0.8917 3.0156 17 8 -0.2200 0.3788 4.3494 18 6 2.5351 -0.7508 3.6144 19 6 3.9747 -0.2590 3.7767 20 7 4.5770 -0.8911 4.9532 21 6 5.8695 -0.6010 5.3001 22 1 6.4448 0.0942 4.7066 23 6 6.4399 -1.1995 6.4150 24 7 5.7387 -2.0463 7.1386 25 14 8.2034 -0.8042 6.8878 26 1 8.3293 0.6507 7.1578 27 1 8.5722 -1.5680 8.1067 28 1 9.1108 -1.1813 5.7745 29 1 -0.3633 -1.0114 0.1821 30 1 -0.3633 0.3479 -0.9670 31 1 -0.3633 0.6635 0.7848 32 1 1.3325 1.8452 -1.4138 33 1 1.6024 3.1953 -3.4533 34 1 2.5755 2.1900 -5.4780 35 1 3.0200 -1.5262 -3.4260 36 1 1.7246 1.7732 3.3176 37 1 1.2196 1.6728 1.6138 38 1 -0.7837 1.8227 2.9833 39 1 -0.6763 0.1643 2.3458 40 1 -1.1025 0.1881 4.6959 41 1 1.9593 -0.4886 4.5020 42 1 2.5331 -1.8333 3.4867 43 1 4.5505 -0.5212 2.8891 44 1 3.9767 0.8235 3.9045 45 1 4.0599 -1.5146 5.4868 46 1 6.1375 -2.4648 7.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717051679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -138.431110 kcal Electronic energy + Delta-G solvation = -29668.097353 eV Core-core repulsion = 25279.838872 eV Total energy + Delta-G solvation = -4388.258482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.99602 -41.97236 -40.66634 -38.44842 -38.06687 -37.06440 -36.00360 -34.00061 -32.92521 -31.57945 -30.83615 -30.46106 -29.16958 -26.30519 -25.20215 -24.21171 -23.91038 -23.64495 -22.68297 -20.36989 -19.73780 -19.20324 -18.70786 -18.30310 -17.62191 -17.46983 -17.19349 -17.04871 -16.76921 -16.53497 -16.46578 -16.05567 -15.66909 -15.38287 -15.17917 -15.13633 -14.89127 -14.72006 -14.60086 -14.17518 -14.00423 -13.53988 -13.43758 -13.13642 -13.08617 -13.00511 -12.91821 -12.77804 -12.61475 -12.49668 -12.20942 -12.19047 -12.11968 -11.96972 -11.89163 -10.99475 -10.92411 -10.74546 -9.94926 -9.80388 -9.36443 -9.09253 -7.99005 -5.30525 0.07802 0.24303 1.27325 1.44396 1.45790 1.49277 1.55413 2.24452 2.54735 2.55997 3.15401 3.32609 3.33791 3.38719 3.57104 3.77219 3.77857 3.97938 4.04438 4.05075 4.07739 4.11163 4.20195 4.28460 4.33538 4.39258 4.43853 4.57573 4.59606 4.64010 4.66847 4.85797 4.98858 5.01053 5.05106 5.06624 5.13828 5.20161 5.30944 5.38253 5.46776 5.67258 6.16435 6.21889 6.33222 6.98928 7.01493 7.27620 7.99030 8.24783 9.24320 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.002613 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.545241 B =10714.527051 C =12498.365711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.134 0.866 4 O -0.314 6.314 5 C 0.142 3.858 6 C -0.215 4.215 7 C -0.037 4.037 8 C -0.190 4.190 9 C 0.121 3.879 10 F -0.145 7.145 11 C -0.214 4.214 12 C 0.504 3.496 13 O -0.574 6.574 14 N -0.589 5.589 15 C 0.085 3.915 16 C 0.049 3.951 17 O -0.594 6.594 18 C 0.130 3.870 19 C 0.150 3.850 20 N -0.742 5.742 21 C -0.254 4.254 22 H 0.074 0.926 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.980 3.020 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.395 0.605 41 H 0.100 0.900 42 H 0.051 0.949 43 H -0.004 1.004 44 H 0.033 0.967 45 H 0.375 0.625 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.045 16.176 -21.512 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.151 0.849 4 O -0.228 6.228 5 C 0.096 3.904 6 C -0.234 4.234 7 C -0.055 4.055 8 C -0.208 4.208 9 C 0.101 3.899 10 F -0.124 7.124 11 C -0.234 4.234 12 C 0.292 3.708 13 O -0.452 6.452 14 N -0.322 5.322 15 C -0.036 4.036 16 C -0.029 4.029 17 O -0.403 6.403 18 C 0.006 3.994 19 C 0.022 3.978 20 N -0.386 5.386 21 C -0.385 4.385 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.808 3.192 26 H -0.197 1.197 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.197 0.803 34 H 0.177 0.823 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.152 0.848 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.014 0.986 44 H 0.051 0.949 45 H 0.207 0.793 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.942 15.522 -21.661 32.695 hybrid contribution 0.667 -1.134 0.588 1.441 sum -18.275 14.389 -21.073 31.386 Atomic orbital electron populations 1.22644 0.89556 1.04603 1.06588 1.22464 0.97859 0.97186 0.81276 0.84895 1.86202 1.81305 1.37797 1.17455 1.18874 0.94635 0.91219 0.85660 1.21723 1.07152 0.92120 1.02375 1.21280 0.93177 1.01266 0.89779 1.21433 1.04301 0.92743 1.02356 1.17530 0.97553 0.92828 0.81944 1.91493 1.83950 1.86323 1.50610 1.20359 1.08572 1.02211 0.92258 1.20976 0.78555 0.85924 0.85368 1.90750 1.46048 1.22076 1.86372 1.47746 1.54206 1.24064 1.06167 1.22339 0.92359 0.83887 1.04992 1.23045 0.95927 0.99999 0.83944 1.86548 1.35773 1.87466 1.30523 1.21294 0.92723 0.97123 0.88220 1.20955 0.92527 0.95860 0.88480 1.42377 1.12660 1.53353 1.30183 1.19564 0.90141 1.20977 1.07836 0.90829 1.25667 1.02895 0.99758 0.98296 1.69824 1.38281 1.33980 1.19733 0.85126 0.79201 0.77872 0.77021 1.19703 1.21681 1.20692 0.92387 0.88149 0.86475 0.81441 0.80313 0.82306 0.85577 0.89172 0.84821 0.88414 0.92129 0.75515 0.88164 0.93077 0.98613 0.94933 0.79340 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.25 71.98 0.59 -1.34 16 2 C 0.07 1.36 1.79 29.85 0.05 1.41 16 3 H 0.13 1.54 4.93 -2.39 -0.01 1.52 16 4 O -0.31 -8.20 9.36 -73.71 -0.69 -8.89 16 5 C 0.14 2.94 6.58 22.50 0.15 3.08 16 6 C -0.22 -2.54 8.36 22.37 0.19 -2.35 16 7 C -0.04 -0.32 10.04 22.25 0.22 -0.10 16 8 C -0.19 -2.42 10.02 22.33 0.22 -2.19 16 9 C 0.12 2.37 7.30 22.36 0.16 2.53 16 10 F -0.15 -3.17 17.27 44.97 0.78 -2.40 16 11 C -0.21 -4.91 9.97 22.41 0.22 -4.69 16 12 C 0.50 15.33 6.99 87.66 0.61 15.94 16 13 O -0.57 -24.94 16.10 15.68 0.25 -24.69 16 14 N -0.59 -15.99 2.47 -821.79 -2.03 -18.02 16 15 C 0.09 1.29 5.33 86.38 0.46 1.75 16 16 C 0.05 0.53 6.37 71.98 0.46 0.99 16 17 O -0.59 -10.57 12.07 -148.98 -1.80 -12.37 16 18 C 0.13 4.83 5.43 86.38 0.47 5.30 16 19 C 0.15 6.71 6.58 86.38 0.57 7.27 16 20 N -0.74 -41.19 5.60 -343.44 -1.92 -43.11 16 21 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 22 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -61.58 13.06 21.65 0.28 -61.29 16 25 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 28 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 29 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 30 H 0.10 0.71 7.38 -2.38 -0.02 0.69 16 31 H 0.12 0.52 3.99 -2.39 -0.01 0.51 16 32 H 0.17 0.79 5.67 -2.91 -0.02 0.78 16 33 H 0.18 0.10 8.06 -2.91 -0.02 0.07 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 37 H 0.13 0.79 5.37 -2.39 -0.01 0.77 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.06 0.58 5.96 -2.39 -0.01 0.57 16 40 H 0.39 3.60 9.12 -74.06 -0.68 2.93 16 41 H 0.10 3.61 6.64 -2.39 -0.02 3.60 16 42 H 0.05 2.22 7.35 -2.39 -0.02 2.21 16 43 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.37 21.89 7.67 -92.71 -0.71 21.18 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -89.64 380.33 2.25 -87.40 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.34 Total: 24.22 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.69 Total: 9.38 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -3.67 Total: -122.42 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.23 Total: -45.95 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -89.64 2.25 -87.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717051679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.034 kcal (2) G-P(sol) polarization free energy of solvation -89.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds