Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 O 1.42898 * 109.47086 * 120.00141 * 2 1 3 5 5 C 1.35942 * 117.00246 * 276.83372 * 4 2 1 6 6 C 1.38702 * 120.03127 * 356.45785 * 5 4 2 7 7 C 1.38151 * 119.97210 * 179.97438 * 6 5 4 8 8 C 1.38449 * 120.03092 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.97074 * 179.97438 * 8 7 6 10 10 C 1.38461 * 120.05946 * 0.25603 * 8 7 6 11 11 C 1.38155 * 120.02645 * 359.48540 * 10 8 7 12 12 C 1.50702 * 109.46886 * 240.00333 * 2 1 3 13 13 O 1.21284 * 119.99647 * 254.64657 * 12 2 1 14 14 N 1.34773 * 120.00002 * 74.64721 * 12 2 1 15 15 C 1.46493 * 120.00046 * 4.95566 * 14 12 2 16 16 C 1.46500 * 119.99849 * 184.95482 * 14 12 2 17 17 C 1.52999 * 109.47108 * 89.99946 * 16 14 12 18 18 H 1.08996 * 109.47393 * 60.00220 * 17 16 14 19 19 O 1.42903 * 109.47488 * 299.99873 * 17 16 14 20 20 C 1.52999 * 109.47302 * 180.02562 * 17 16 14 21 21 N 1.46501 * 109.47334 * 185.00146 * 20 17 16 22 22 C 1.36942 * 119.99740 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00028 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99593 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99925 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99790 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47147 * 60.00117 * 26 24 22 28 28 H 1.48498 * 109.46811 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47128 * 299.99991 * 26 24 22 30 30 H 1.08992 * 109.47259 * 55.39352 * 1 2 3 31 31 H 1.09006 * 109.47283 * 175.39381 * 1 2 3 32 32 H 1.08996 * 109.47160 * 295.39406 * 1 2 3 33 33 H 1.08007 * 120.01443 * 0.02562 * 6 5 4 34 34 H 1.08007 * 119.98302 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.98124 * 179.72581 * 10 8 7 36 36 H 1.08001 * 120.01119 * 180.23471 * 11 10 8 37 37 H 1.09000 * 109.47384 * 94.46319 * 15 14 12 38 38 H 1.09006 * 109.47132 * 214.46075 * 15 14 12 39 39 H 1.09005 * 109.47441 * 334.45435 * 15 14 12 40 40 H 1.09001 * 109.47564 * 209.99925 * 16 14 12 41 41 H 1.08998 * 109.47319 * 329.99945 * 16 14 12 42 42 H 0.96702 * 113.99639 * 300.00636 * 19 17 16 43 43 H 1.09002 * 109.47170 * 304.99854 * 20 17 16 44 44 H 1.09006 * 109.47141 * 64.99654 * 20 17 16 45 45 H 0.97001 * 119.99925 * 359.97438 * 21 20 17 46 46 H 0.97001 * 119.99339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0762 0.0528 2.3136 6 6 1.7643 1.4043 2.2994 7 6 1.8352 2.1413 3.4657 8 6 2.2179 1.5317 4.6484 9 9 2.2873 2.2536 5.7881 10 6 2.5351 0.1840 4.6630 11 6 2.4599 -0.5566 3.4991 12 6 2.0323 -0.7104 -1.2305 13 8 2.4966 -1.8271 -1.1390 14 7 1.9656 -0.1047 -2.4327 15 6 1.5064 1.2830 -2.5292 16 6 2.3523 -0.8342 -3.6428 17 6 1.1288 -1.5485 -4.2206 18 1 0.3626 -0.8140 -4.4685 19 8 0.6133 -2.4672 -3.2550 20 6 1.5327 -2.3109 -5.4841 21 7 0.3410 -2.8961 -6.1034 22 6 0.4572 -3.6285 -7.2547 23 1 1.4274 -3.7750 -7.7058 24 6 -0.6720 -4.1834 -7.8412 25 7 -1.8543 -4.0052 -7.2910 26 14 -0.5134 -5.1830 -9.4112 27 1 0.3743 -6.3485 -9.1685 28 1 -1.8552 -5.6611 -9.8312 29 1 0.0666 -4.3336 -10.4824 30 1 -0.3633 0.5836 -0.8458 31 1 -0.3634 -1.0244 -0.0825 32 1 -0.3633 0.4407 0.9283 33 1 1.4654 1.8800 1.3770 34 1 1.5928 3.1937 3.4547 35 1 2.8378 -0.2893 5.5853 36 1 2.7038 -1.6086 3.5115 37 1 2.3669 1.9519 -2.5214 38 1 0.9498 1.4179 -3.4568 39 1 0.8604 1.5119 -1.6815 40 1 2.7454 -0.1336 -4.3795 41 1 3.1184 -1.5688 -3.3951 42 1 1.2428 -3.1507 -2.9872 43 1 2.0074 -1.6253 -6.1861 44 1 2.2326 -3.1043 -5.2216 45 1 -0.5304 -2.7648 -5.6979 46 1 -2.6434 -4.3927 -7.7011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717933877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = -114.991886 kcal Electronic energy + Delta-G solvation = -29310.085135 eV Core-core repulsion = 24922.843055 eV Total energy + Delta-G solvation = -4387.242081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.17708 -41.06996 -39.79349 -37.79683 -37.05327 -35.47088 -34.00819 -32.65200 -31.53163 -31.20568 -29.69751 -29.26970 -27.12464 -25.92626 -24.57035 -23.59867 -22.89186 -22.09219 -21.17438 -19.61702 -18.95310 -17.74163 -17.52001 -17.15972 -16.73934 -16.45164 -16.20726 -15.89707 -15.53329 -15.42799 -15.15602 -14.92958 -14.41791 -14.26074 -14.08946 -13.78452 -13.69888 -13.46130 -13.37320 -13.08553 -12.96242 -12.77739 -12.67111 -12.49172 -12.24044 -12.13527 -12.02289 -11.55560 -11.39318 -11.10881 -10.94187 -10.80097 -10.69662 -10.19421 -9.94958 -9.76846 -9.64654 -9.59879 -8.89014 -8.63055 -8.49951 -6.92109 -5.74757 -3.04201 0.70016 0.79263 2.22592 2.40546 3.10891 3.19174 3.44424 3.48599 3.49973 3.89244 4.04636 4.19799 4.27260 4.39638 4.52069 4.57799 4.68390 4.71737 4.80569 4.85736 4.94710 5.03282 5.12416 5.23096 5.24885 5.29370 5.38060 5.45092 5.52919 5.63510 5.65812 5.69920 5.72782 5.77182 5.84008 5.96792 6.17943 6.25285 6.34337 6.51286 6.71947 6.89574 7.14946 7.68622 7.99055 8.14779 8.43531 9.54783 10.12459 10.48050 11.47569 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.001836 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.750321 B =15243.549103 C =15394.838259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 H 0.094 0.906 4 O -0.280 6.280 5 C 0.127 3.873 6 C -0.187 4.187 7 C -0.110 4.110 8 C 0.055 3.945 9 F -0.142 7.142 10 C -0.111 4.111 11 C -0.121 4.121 12 C 0.527 3.473 13 O -0.511 6.511 14 N -0.605 5.605 15 C 0.066 3.934 16 C 0.085 3.915 17 C 0.086 3.914 18 H 0.096 0.904 19 O -0.549 6.549 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.244 4.244 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.375 0.625 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.388 0.612 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 17.077 22.290 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.008 3.992 3 H 0.111 0.889 4 O -0.192 6.192 5 C 0.081 3.919 6 C -0.205 4.205 7 C -0.129 4.129 8 C 0.035 3.965 9 F -0.121 7.121 10 C -0.129 4.129 11 C -0.140 4.140 12 C 0.313 3.687 13 O -0.384 6.384 14 N -0.339 5.339 15 C -0.077 4.077 16 C -0.038 4.038 17 C 0.025 3.975 18 H 0.114 0.886 19 O -0.354 6.354 20 C -0.003 4.003 21 N -0.370 5.370 22 C -0.375 4.375 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.222 0.778 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.222 0.778 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.550 16.576 22.135 28.945 hybrid contribution 0.149 -0.335 -0.716 0.804 sum 8.699 16.242 21.419 28.253 Atomic orbital electron populations 1.22355 0.91952 1.05425 1.03666 1.22277 0.96261 0.96651 0.84041 0.88877 1.86264 1.80238 1.37710 1.15026 1.19099 0.95864 0.90122 0.86836 1.21144 1.06794 0.93251 0.99353 1.20926 1.00131 1.00881 0.90971 1.17584 1.06072 0.90220 0.82580 1.91492 1.94440 1.77680 1.48497 1.20987 1.00517 0.92220 0.99224 1.20338 1.03182 1.01297 0.89148 1.19800 0.78800 0.86469 0.83635 1.90717 1.43578 1.18749 1.85390 1.47528 1.66607 1.13547 1.06232 1.22035 0.99981 0.81706 1.04020 1.22315 0.98637 0.97257 0.85571 1.22495 0.94953 0.91488 0.88550 0.88578 1.86535 1.44039 1.44119 1.60713 1.21234 0.91736 0.95217 0.92087 1.42232 1.04221 1.62220 1.28288 1.19180 0.93395 1.24684 1.00212 0.91307 1.24764 0.95384 1.01340 0.99426 1.69671 0.97643 1.49514 1.41021 0.86253 0.76532 0.80092 0.83193 1.21254 1.21659 1.21287 0.89763 0.89884 0.90755 0.84310 0.84392 0.83950 0.83807 0.92183 0.90198 0.90768 0.89289 0.89184 0.77785 0.95767 0.96071 0.77762 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 8.96 37.16 0.33 -1.18 16 2 C 0.07 0.65 1.81 -27.88 -0.05 0.60 16 3 H 0.09 0.62 5.07 -51.93 -0.26 0.36 16 4 O -0.28 -3.26 9.38 -39.03 -0.37 -3.63 16 5 C 0.13 1.20 6.50 -39.24 -0.26 0.95 16 6 C -0.19 -1.38 8.35 -39.44 -0.33 -1.71 16 7 C -0.11 -0.79 10.02 -39.54 -0.40 -1.19 16 8 C 0.05 0.45 7.30 -39.42 -0.29 0.17 16 9 F -0.14 -1.29 17.26 2.25 0.04 -1.25 16 10 C -0.11 -0.84 10.02 -39.53 -0.40 -1.24 16 11 C -0.12 -1.04 9.98 -39.44 -0.39 -1.43 16 12 C 0.53 6.76 6.40 -10.99 -0.07 6.69 16 13 O -0.51 -8.58 15.26 -17.44 -0.27 -8.85 16 14 N -0.60 -6.55 2.83 -181.57 -0.51 -7.06 16 15 C 0.07 0.44 9.99 59.84 0.60 1.04 16 16 C 0.09 1.04 5.19 -4.04 -0.02 1.02 16 17 C 0.09 1.37 3.27 -26.73 -0.09 1.28 16 18 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 19 O -0.55 -9.98 12.20 -37.15 -0.45 -10.44 16 20 C 0.13 2.47 5.90 -4.04 -0.02 2.45 16 21 N -0.72 -18.66 5.55 -59.90 -0.33 -18.99 16 22 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 26 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.08 0.60 6.21 -51.93 -0.32 0.28 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.52 7.37 -51.93 -0.38 0.14 16 33 H 0.14 0.73 5.73 -52.48 -0.30 0.42 16 34 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.07 0.37 4.45 -51.93 -0.23 0.14 16 40 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.09 1.20 7.36 -51.93 -0.38 0.82 16 42 H 0.37 6.52 8.62 45.56 0.39 6.91 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.39 10.75 7.67 -40.82 -0.31 10.44 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -35.62 385.28 -7.58 -43.20 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.57 Total: 11.65 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.63 Total: -0.10 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.12 Total: -53.99 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.09 Total: -22.91 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.62 -7.58 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717933877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.788 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds