Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 O 1.42898 * 109.47086 * 120.00141 * 2 1 3 5 5 C 1.35942 * 117.00246 * 276.83372 * 4 2 1 6 6 C 1.38702 * 120.03127 * 356.45785 * 5 4 2 7 7 C 1.38151 * 119.97210 * 179.97438 * 6 5 4 8 8 C 1.38449 * 120.03092 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.97074 * 179.97438 * 8 7 6 10 10 C 1.38461 * 120.05946 * 0.25603 * 8 7 6 11 11 C 1.38155 * 120.02645 * 359.48540 * 10 8 7 12 12 C 1.50702 * 109.46886 * 240.00333 * 2 1 3 13 13 O 1.21284 * 119.99647 * 254.64657 * 12 2 1 14 14 N 1.34773 * 120.00002 * 74.64721 * 12 2 1 15 15 C 1.46493 * 120.00046 * 4.95566 * 14 12 2 16 16 C 1.46500 * 119.99849 * 184.95482 * 14 12 2 17 17 C 1.52999 * 109.47108 * 89.99946 * 16 14 12 18 18 H 1.08996 * 109.47393 * 60.00220 * 17 16 14 19 19 O 1.42903 * 109.47488 * 299.99873 * 17 16 14 20 20 C 1.52999 * 109.47302 * 180.02562 * 17 16 14 21 21 N 1.46501 * 109.47334 * 185.00146 * 20 17 16 22 22 C 1.36942 * 119.99740 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00028 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99593 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99925 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99790 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47147 * 60.00117 * 26 24 22 28 28 H 1.48498 * 109.46811 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47128 * 299.99991 * 26 24 22 30 30 H 1.08992 * 109.47259 * 55.39352 * 1 2 3 31 31 H 1.09006 * 109.47283 * 175.39381 * 1 2 3 32 32 H 1.08996 * 109.47160 * 295.39406 * 1 2 3 33 33 H 1.08007 * 120.01443 * 0.02562 * 6 5 4 34 34 H 1.08007 * 119.98302 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.98124 * 179.72581 * 10 8 7 36 36 H 1.08001 * 120.01119 * 180.23471 * 11 10 8 37 37 H 1.09000 * 109.47384 * 94.46319 * 15 14 12 38 38 H 1.09006 * 109.47132 * 214.46075 * 15 14 12 39 39 H 1.09005 * 109.47441 * 334.45435 * 15 14 12 40 40 H 1.09001 * 109.47564 * 209.99925 * 16 14 12 41 41 H 1.08998 * 109.47319 * 329.99945 * 16 14 12 42 42 H 0.96702 * 113.99639 * 300.00636 * 19 17 16 43 43 H 1.09002 * 109.47170 * 304.99854 * 20 17 16 44 44 H 1.09006 * 109.47141 * 64.99654 * 20 17 16 45 45 H 0.97001 * 119.99925 * 359.97438 * 21 20 17 46 46 H 0.97001 * 119.99339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0762 0.0528 2.3136 6 6 1.7643 1.4043 2.2994 7 6 1.8352 2.1413 3.4657 8 6 2.2179 1.5317 4.6484 9 9 2.2873 2.2536 5.7881 10 6 2.5351 0.1840 4.6630 11 6 2.4599 -0.5566 3.4991 12 6 2.0323 -0.7104 -1.2305 13 8 2.4966 -1.8271 -1.1390 14 7 1.9656 -0.1047 -2.4327 15 6 1.5064 1.2830 -2.5292 16 6 2.3523 -0.8342 -3.6428 17 6 1.1288 -1.5485 -4.2206 18 1 0.3626 -0.8140 -4.4685 19 8 0.6133 -2.4672 -3.2550 20 6 1.5327 -2.3109 -5.4841 21 7 0.3410 -2.8961 -6.1034 22 6 0.4572 -3.6285 -7.2547 23 1 1.4274 -3.7750 -7.7058 24 6 -0.6720 -4.1834 -7.8412 25 7 -1.8543 -4.0052 -7.2910 26 14 -0.5134 -5.1830 -9.4112 27 1 0.3743 -6.3485 -9.1685 28 1 -1.8552 -5.6611 -9.8312 29 1 0.0666 -4.3336 -10.4824 30 1 -0.3633 0.5836 -0.8458 31 1 -0.3634 -1.0244 -0.0825 32 1 -0.3633 0.4407 0.9283 33 1 1.4654 1.8800 1.3770 34 1 1.5928 3.1937 3.4547 35 1 2.8378 -0.2893 5.5853 36 1 2.7038 -1.6086 3.5115 37 1 2.3669 1.9519 -2.5214 38 1 0.9498 1.4179 -3.4568 39 1 0.8604 1.5119 -1.6815 40 1 2.7454 -0.1336 -4.3795 41 1 3.1184 -1.5688 -3.3951 42 1 1.2428 -3.1507 -2.9872 43 1 2.0074 -1.6253 -6.1861 44 1 2.2326 -3.1043 -5.2216 45 1 -0.5304 -2.7648 -5.6979 46 1 -2.6434 -4.3927 -7.7011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717933877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = -140.192471 kcal Electronic energy + Delta-G solvation = -29311.177915 eV Core-core repulsion = 24922.843055 eV Total energy + Delta-G solvation = -4388.334860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.82280 -41.84514 -40.63508 -38.83280 -38.06059 -36.51457 -35.88452 -33.49397 -33.09679 -32.08557 -30.74861 -30.20141 -27.98554 -27.22987 -25.59096 -24.62379 -23.98220 -23.04571 -22.52586 -20.48120 -19.61633 -19.23680 -18.41125 -18.30900 -17.80369 -17.39280 -16.98913 -16.63685 -16.57496 -16.52283 -16.25061 -16.19388 -15.66365 -15.42072 -14.98368 -14.84643 -14.65934 -14.40222 -14.25541 -14.13518 -13.98466 -13.77513 -13.61435 -13.42568 -13.34994 -13.01689 -12.93722 -12.75556 -12.71143 -12.58760 -12.21420 -12.04203 -12.03219 -11.82239 -11.73078 -11.17035 -10.97026 -10.74160 -10.20232 -9.61223 -9.15182 -9.01872 -7.95342 -5.25120 0.13483 0.17395 1.44783 1.46921 1.47937 1.49990 1.56161 2.40940 2.54287 2.56101 3.26329 3.32072 3.36453 3.51930 3.57792 3.71818 3.74653 3.82829 3.85918 4.04786 4.13561 4.15334 4.25921 4.29363 4.43294 4.48304 4.50796 4.61205 4.65405 4.67638 4.78576 4.87626 4.91618 4.92404 5.09018 5.13226 5.15318 5.20845 5.23464 5.39575 5.47061 5.67086 6.19503 6.25397 6.35698 6.75551 7.08246 7.31965 8.08228 8.30968 9.27781 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.001836 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.750321 B =15243.549103 C =15394.838259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.131 0.869 4 O -0.310 6.310 5 C 0.107 3.893 6 C -0.181 4.181 7 C -0.106 4.106 8 C 0.040 3.960 9 F -0.149 7.149 10 C -0.110 4.110 11 C -0.135 4.135 12 C 0.516 3.484 13 O -0.563 6.563 14 N -0.601 5.601 15 C 0.054 3.946 16 C 0.095 3.905 17 C 0.096 3.904 18 H 0.096 0.904 19 O -0.567 6.567 20 C 0.123 3.877 21 N -0.740 5.740 22 C -0.250 4.250 23 H 0.077 0.923 24 C -0.078 4.078 25 N -0.969 5.969 26 Si 0.977 3.023 27 H -0.280 1.280 28 H -0.295 1.295 29 H -0.274 1.274 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.375 0.625 43 H 0.043 0.957 44 H 0.019 0.981 45 H 0.374 0.626 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 19.588 22.167 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.148 0.852 4 O -0.223 6.223 5 C 0.062 3.938 6 C -0.199 4.199 7 C -0.125 4.125 8 C 0.021 3.979 9 F -0.128 7.128 10 C -0.129 4.129 11 C -0.154 4.154 12 C 0.304 3.696 13 O -0.441 6.441 14 N -0.334 5.334 15 C -0.087 4.087 16 C -0.029 4.029 17 C 0.035 3.965 18 H 0.114 0.886 19 O -0.372 6.372 20 C -0.004 4.004 21 N -0.383 5.383 22 C -0.381 4.381 23 H 0.095 0.905 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.806 3.194 27 H -0.206 1.206 28 H -0.222 1.222 29 H -0.199 1.199 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.222 0.778 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.206 0.794 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.350 19.147 22.016 30.639 hybrid contribution -0.034 -1.063 -0.615 1.229 sum 9.316 18.084 21.401 29.526 Atomic orbital electron populations 1.22340 0.91201 1.03865 1.05454 1.22362 0.96600 0.97621 0.82262 0.85228 1.86231 1.80841 1.39205 1.16022 1.19339 0.96994 0.91130 0.86322 1.21366 1.05846 0.92237 1.00461 1.21208 0.98991 1.02021 0.90265 1.17836 1.06681 0.90503 0.82891 1.91476 1.94560 1.77792 1.48937 1.21143 1.00014 0.92223 0.99514 1.20469 1.03780 1.01579 0.89567 1.20497 0.78023 0.86080 0.85032 1.90687 1.46010 1.21090 1.86311 1.47622 1.65772 1.14910 1.05074 1.22395 1.01603 0.79423 1.05271 1.22092 0.96192 0.97744 0.86835 1.22443 0.96510 0.90726 0.86776 0.88620 1.86511 1.44845 1.44715 1.61143 1.21450 0.89687 0.95502 0.93807 1.42447 1.05394 1.62461 1.28013 1.19635 0.93655 1.24046 1.00796 0.90498 1.25641 0.95163 1.03174 1.03017 1.69842 0.98258 1.51126 1.42741 0.85164 0.76195 0.78639 0.79452 1.20591 1.22161 1.19946 0.87934 0.93166 0.88883 0.81759 0.81983 0.82418 0.83955 0.89527 0.89664 0.88791 0.86114 0.90512 0.77776 0.93932 0.96343 0.79398 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 8.96 71.98 0.65 -2.01 16 2 C 0.07 1.26 1.81 29.85 0.05 1.31 16 3 H 0.13 1.26 5.07 -2.39 -0.01 1.25 16 4 O -0.31 -7.13 9.38 -74.28 -0.70 -7.83 16 5 C 0.11 1.93 6.50 22.49 0.15 2.07 16 6 C -0.18 -2.19 8.35 22.36 0.19 -2.01 16 7 C -0.11 -1.25 10.02 22.30 0.22 -1.02 16 8 C 0.04 0.60 7.30 22.37 0.16 0.77 16 9 F -0.15 -2.50 17.26 44.97 0.78 -1.73 16 10 C -0.11 -1.60 10.02 22.30 0.22 -1.37 16 11 C -0.14 -2.30 9.98 22.36 0.22 -2.08 16 12 C 0.52 12.88 6.40 87.66 0.56 13.44 16 13 O -0.56 -19.52 15.26 18.94 0.29 -19.23 16 14 N -0.60 -11.84 2.83 -846.76 -2.39 -14.24 16 15 C 0.05 0.53 9.99 127.77 1.28 1.80 16 16 C 0.09 2.18 5.19 86.38 0.45 2.63 16 17 C 0.10 3.00 3.27 30.59 0.10 3.10 16 18 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 19 O -0.57 -21.10 12.20 -147.15 -1.80 -22.89 16 20 C 0.12 4.76 5.90 86.38 0.51 5.27 16 21 N -0.74 -38.39 5.55 -343.43 -1.91 -40.30 16 22 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 26 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 30 H 0.10 1.17 6.21 -2.39 -0.01 1.15 16 31 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.09 1.09 7.37 -2.39 -0.02 1.07 16 33 H 0.17 1.01 5.73 -2.91 -0.02 1.00 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.80 8.11 -2.38 -0.02 0.78 16 39 H 0.09 0.54 4.45 -2.38 -0.01 0.53 16 40 H 0.12 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.08 2.01 7.36 -2.39 -0.02 2.00 16 42 H 0.37 13.68 8.62 -74.06 -0.64 13.05 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 46 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.65 385.28 2.33 -77.32 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.32 Total: 36.19 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.07 Total: 4.50 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.02 Total: -115.01 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -2.20 Total: -49.95 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.65 2.33 -77.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717933877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.877 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds