Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99613 * 2 1 4 4 N 1.34777 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63304 * 359.97438 * 4 2 1 6 6 C 1.53189 * 108.77338 * 233.62685 * 5 4 2 7 7 C 1.53032 * 109.31413 * 305.36684 * 6 5 4 8 8 C 1.53037 * 109.54159 * 61.36665 * 7 6 5 9 9 H 1.09000 * 109.52610 * 58.59953 * 8 7 6 10 10 C 1.53002 * 109.50021 * 178.68477 * 8 7 6 11 11 H 1.09001 * 110.91892 * 57.38623 * 10 8 7 12 12 C 1.55160 * 111.00107 * 293.48812 * 10 8 7 13 13 C 1.54323 * 102.94127 * 206.42505 * 12 10 8 14 14 N 1.47192 * 107.29513 * 22.28167 * 13 12 10 15 15 C 1.34771 * 125.73645 * 181.02615 * 14 13 12 16 16 O 1.21281 * 119.99819 * 179.86124 * 15 14 13 17 17 C 1.50704 * 120.00270 * 359.86941 * 15 14 13 18 18 S 1.81000 * 109.47148 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99853 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99980 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00160 * 180.02562 * 19 18 17 22 22 N 1.31637 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47144 * 59.99624 * 23 21 19 25 25 H 1.48501 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46960 * 299.99614 * 23 21 19 27 27 C 1.47425 * 108.61291 * 0.91225 * 14 13 12 28 28 C 1.46925 * 120.62603 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47152 * 240.00093 * 1 2 3 30 30 H 1.09003 * 109.47148 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 120.00271 * 1 2 3 32 32 H 1.09000 * 109.58459 * 353.41804 * 5 4 2 33 33 H 1.08999 * 109.58819 * 113.69916 * 5 4 2 34 34 H 1.09002 * 109.49588 * 65.31715 * 6 5 4 35 35 H 1.08997 * 109.49581 * 185.37718 * 6 5 4 36 36 H 1.08995 * 109.46137 * 301.34192 * 7 6 5 37 37 H 1.09005 * 109.46188 * 181.38484 * 7 6 5 38 38 H 1.09004 * 110.71965 * 324.78457 * 12 10 8 39 39 H 1.09001 * 110.72402 * 88.06163 * 12 10 8 40 40 H 1.08999 * 109.88854 * 141.60703 * 13 12 10 41 41 H 1.08999 * 109.88552 * 262.77952 * 13 12 10 42 42 H 1.08997 * 109.46865 * 300.00069 * 17 15 14 43 43 H 1.09004 * 109.46846 * 59.99569 * 17 15 14 44 44 H 0.96997 * 120.00163 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36696 * 217.11260 * 27 14 13 46 46 H 1.08995 * 110.36608 * 94.90096 * 27 14 13 47 47 H 1.09005 * 109.58965 * 6.58770 * 28 4 2 48 48 H 1.09005 * 109.70479 * 246.22780 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4477 0.0017 6 6 1.9685 -3.2984 1.1699 7 6 3.4898 -3.4333 1.0734 8 6 4.1337 -2.0483 1.1686 9 1 3.8503 -1.5787 2.1106 10 6 5.6561 -2.1873 1.1051 11 1 5.9627 -2.6949 0.1905 12 6 6.2002 -2.9226 2.3583 13 6 7.6423 -2.3857 2.4751 14 7 7.6893 -1.0990 1.7619 15 6 8.7789 -0.3194 1.6157 16 8 8.7001 0.7241 1.0027 17 6 10.0953 -0.7445 2.2136 18 16 11.3550 0.5027 1.8476 19 6 12.7485 -0.2279 2.6408 20 1 12.6449 -1.1744 3.1505 21 6 13.9790 0.4134 2.6114 22 7 14.1051 1.5673 1.9906 23 14 15.4561 -0.3608 3.4529 24 1 15.7296 -1.6896 2.8490 25 1 16.6418 0.5158 3.2770 26 1 15.1713 -0.5243 4.9011 27 6 6.3455 -0.8058 1.2312 28 6 3.6500 -1.1833 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 0.3921 -2.2657 0.1197 33 1 1.6404 -2.9692 -0.9384 34 1 1.7050 -2.8174 2.1118 35 1 1.5115 -4.2869 1.1258 36 1 3.7540 -3.8919 0.1205 37 1 3.8515 -4.0587 1.8897 38 1 5.6184 -2.6605 3.2421 39 1 6.2017 -4.0013 2.2023 40 1 7.8984 -2.2359 3.5240 41 1 8.3380 -3.0895 2.0184 42 1 9.9877 -0.8467 3.2935 43 1 10.3965 -1.7009 1.7863 44 1 14.9652 2.0154 1.9698 45 1 6.4194 -0.3281 0.2542 46 1 5.7949 -0.1688 1.9234 47 1 4.0266 -0.1672 0.1188 48 1 4.0134 -1.6012 -0.9378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718059149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = -81.882093 kcal Electronic energy + Delta-G solvation = -27239.460452 eV Core-core repulsion = 23419.867296 eV Total energy + Delta-G solvation = -3819.593156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75213 -39.71470 -38.16285 -36.85816 -34.02686 -32.41185 -32.39433 -31.10603 -29.77567 -29.58925 -27.67225 -25.57780 -25.47195 -24.15100 -22.58107 -21.69512 -20.37973 -19.45677 -19.14010 -17.69265 -17.45771 -16.59949 -16.40089 -16.15364 -15.69942 -15.30937 -14.86519 -14.78563 -14.54416 -14.24761 -14.08038 -13.86928 -13.65826 -13.56005 -13.49297 -13.16679 -12.84915 -12.72304 -12.56953 -12.50069 -12.35628 -11.85222 -11.77779 -11.67748 -11.54468 -11.30086 -11.09045 -11.02349 -11.01845 -10.87387 -10.75812 -10.62954 -10.10954 -9.79937 -9.35809 -9.03740 -9.02468 -8.45187 -8.20542 -6.47520 -6.18974 -3.89699 2.29490 2.60372 2.95370 3.11529 3.24858 3.27392 3.30752 3.64841 4.00533 4.17988 4.22112 4.24517 4.32823 4.42631 4.46505 4.65238 4.76625 4.79467 4.88897 4.92071 4.95792 5.00339 5.12263 5.15503 5.16242 5.21930 5.28216 5.31870 5.38199 5.41126 5.49297 5.55406 5.56868 5.56977 5.67370 5.73634 5.77655 5.82383 5.88838 5.98390 6.07617 6.10908 6.16961 6.47544 7.02022 7.61255 7.72546 7.83752 8.37309 8.61150 9.25773 10.88401 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.002008 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.212553 B =13940.316052 C =14848.732118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.541 6.541 4 N -0.615 5.615 5 C 0.106 3.894 6 C -0.136 4.136 7 C -0.115 4.115 8 C -0.088 4.088 9 H 0.079 0.921 10 C -0.095 4.095 11 H 0.088 0.912 12 C -0.123 4.123 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.111 3.889 28 C 0.111 3.889 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.275 -15.875 -1.523 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.418 6.418 4 N -0.349 5.349 5 C -0.017 4.017 6 C -0.174 4.174 7 C -0.152 4.152 8 C -0.107 4.107 9 H 0.097 0.903 10 C -0.115 4.115 11 H 0.107 0.893 12 C -0.161 4.161 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.012 4.012 28 C -0.012 4.012 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.865 -13.523 -2.503 32.879 hybrid contribution 1.044 -1.920 1.327 2.557 sum -28.821 -15.443 -1.176 32.719 Atomic orbital electron populations 1.21942 0.91860 1.05510 1.03953 1.20848 0.90651 0.83082 0.75626 1.90763 1.70678 1.30964 1.49356 1.48146 1.06983 1.05972 1.73786 1.21781 0.96739 0.84146 0.99068 1.21922 0.96581 1.00156 0.98727 1.21572 0.94466 0.96443 1.02735 1.21454 0.93565 0.96246 0.99457 0.90299 1.22377 0.93535 0.96281 0.99276 0.89342 1.22681 0.95016 1.00318 0.98059 1.22020 0.97385 0.85465 0.97325 1.48531 1.09158 1.22350 1.56418 1.20025 0.83807 0.83043 0.79548 1.90717 1.84428 1.23064 1.40676 1.23501 0.96564 1.06227 1.03341 1.85422 0.99804 1.25713 1.72478 1.22817 0.95514 1.09733 1.40281 0.91006 1.24996 0.98434 0.94849 0.95340 1.70013 1.25378 1.14606 1.40260 0.86221 0.80590 0.78984 0.79677 1.19955 1.20808 1.19948 1.22200 0.82896 0.96040 1.00055 1.21706 0.79027 1.02366 0.98055 0.89441 0.88972 0.89467 0.89611 0.91170 0.91368 0.90484 0.91484 0.91099 0.90486 0.89971 0.91329 0.91288 0.89368 0.89362 0.92133 0.90381 0.91673 0.88507 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 8.67 36.01 0.31 -0.55 16 2 C 0.51 4.84 7.81 -10.98 -0.09 4.75 16 3 O -0.54 -7.93 16.50 5.56 0.09 -7.84 16 4 N -0.61 -4.60 2.97 -172.80 -0.51 -5.12 16 5 C 0.11 0.41 6.34 -3.71 -0.02 0.39 16 6 C -0.14 -0.48 6.08 -26.62 -0.16 -0.64 16 7 C -0.11 -0.53 5.04 -26.70 -0.13 -0.66 16 8 C -0.09 -0.60 1.84 -90.53 -0.17 -0.76 16 9 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 10 C -0.09 -0.78 2.56 -88.47 -0.23 -1.00 16 11 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.12 -0.91 5.58 -24.89 -0.14 -1.05 16 13 C 0.10 1.10 6.50 -2.97 -0.02 1.08 16 14 N -0.63 -9.45 3.33 -170.39 -0.57 -10.02 16 15 C 0.55 11.10 7.87 -10.99 -0.09 11.01 16 16 O -0.51 -12.57 16.12 5.56 0.09 -12.48 16 17 C -0.15 -3.10 5.36 36.01 0.19 -2.91 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 19 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.11 1.40 5.41 -2.53 -0.01 1.39 16 28 C 0.11 0.94 5.40 -3.74 -0.02 0.92 16 29 H 0.09 0.26 7.69 -51.93 -0.40 -0.14 16 30 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.09 0.26 7.94 -51.93 -0.41 -0.15 16 32 H 0.09 0.17 5.93 -51.93 -0.31 -0.13 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.30 7.46 -51.93 -0.39 -0.09 16 38 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 39 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 43 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16 46 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 47 H 0.10 1.11 6.42 -51.93 -0.33 0.77 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -38.21 394.44 -9.96 -48.17 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -8.13 Total: -4.31 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.37 Total: -1.23 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.35 Total: -40.96 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.18 Total: -20.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.21 -9.96 -48.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718059149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.709 kcal (2) G-P(sol) polarization free energy of solvation -38.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds