Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99613 * 2 1 4 4 N 1.34777 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63304 * 359.97438 * 4 2 1 6 6 C 1.53189 * 108.77338 * 233.62685 * 5 4 2 7 7 C 1.53032 * 109.31413 * 305.36684 * 6 5 4 8 8 C 1.53037 * 109.54159 * 61.36665 * 7 6 5 9 9 H 1.09000 * 109.52610 * 58.59953 * 8 7 6 10 10 C 1.53002 * 109.50021 * 178.68477 * 8 7 6 11 11 H 1.09001 * 110.91892 * 57.38623 * 10 8 7 12 12 C 1.55160 * 111.00107 * 293.48812 * 10 8 7 13 13 C 1.54323 * 102.94127 * 206.42505 * 12 10 8 14 14 N 1.47192 * 107.29513 * 22.28167 * 13 12 10 15 15 C 1.34771 * 125.73645 * 181.02615 * 14 13 12 16 16 O 1.21281 * 119.99819 * 179.86124 * 15 14 13 17 17 C 1.50704 * 120.00270 * 359.86941 * 15 14 13 18 18 S 1.81000 * 109.47148 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99853 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99980 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00160 * 180.02562 * 19 18 17 22 22 N 1.31637 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00135 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47144 * 59.99624 * 23 21 19 25 25 H 1.48501 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46960 * 299.99614 * 23 21 19 27 27 C 1.47425 * 108.61291 * 0.91225 * 14 13 12 28 28 C 1.46925 * 120.62603 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47152 * 240.00093 * 1 2 3 30 30 H 1.09003 * 109.47148 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 120.00271 * 1 2 3 32 32 H 1.09000 * 109.58459 * 353.41804 * 5 4 2 33 33 H 1.08999 * 109.58819 * 113.69916 * 5 4 2 34 34 H 1.09002 * 109.49588 * 65.31715 * 6 5 4 35 35 H 1.08997 * 109.49581 * 185.37718 * 6 5 4 36 36 H 1.08995 * 109.46137 * 301.34192 * 7 6 5 37 37 H 1.09005 * 109.46188 * 181.38484 * 7 6 5 38 38 H 1.09004 * 110.71965 * 324.78457 * 12 10 8 39 39 H 1.09001 * 110.72402 * 88.06163 * 12 10 8 40 40 H 1.08999 * 109.88854 * 141.60703 * 13 12 10 41 41 H 1.08999 * 109.88552 * 262.77952 * 13 12 10 42 42 H 1.08997 * 109.46865 * 300.00069 * 17 15 14 43 43 H 1.09004 * 109.46846 * 59.99569 * 17 15 14 44 44 H 0.96997 * 120.00163 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36696 * 217.11260 * 27 14 13 46 46 H 1.08995 * 110.36608 * 94.90096 * 27 14 13 47 47 H 1.09005 * 109.58965 * 6.58770 * 28 4 2 48 48 H 1.09005 * 109.70479 * 246.22780 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4477 0.0017 6 6 1.9685 -3.2984 1.1699 7 6 3.4898 -3.4333 1.0734 8 6 4.1337 -2.0483 1.1686 9 1 3.8503 -1.5787 2.1106 10 6 5.6561 -2.1873 1.1051 11 1 5.9627 -2.6949 0.1905 12 6 6.2002 -2.9226 2.3583 13 6 7.6423 -2.3857 2.4751 14 7 7.6893 -1.0990 1.7619 15 6 8.7789 -0.3194 1.6157 16 8 8.7001 0.7241 1.0027 17 6 10.0953 -0.7445 2.2136 18 16 11.3550 0.5027 1.8476 19 6 12.7485 -0.2279 2.6408 20 1 12.6449 -1.1744 3.1505 21 6 13.9790 0.4134 2.6114 22 7 14.1051 1.5673 1.9906 23 14 15.4561 -0.3608 3.4529 24 1 15.7296 -1.6896 2.8490 25 1 16.6418 0.5158 3.2770 26 1 15.1713 -0.5243 4.9011 27 6 6.3455 -0.8058 1.2312 28 6 3.6500 -1.1833 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 0.3921 -2.2657 0.1197 33 1 1.6404 -2.9692 -0.9384 34 1 1.7050 -2.8174 2.1118 35 1 1.5115 -4.2869 1.1258 36 1 3.7540 -3.8919 0.1205 37 1 3.8515 -4.0587 1.8897 38 1 5.6184 -2.6605 3.2421 39 1 6.2017 -4.0013 2.2023 40 1 7.8984 -2.2359 3.5240 41 1 8.3380 -3.0895 2.0184 42 1 9.9877 -0.8467 3.2935 43 1 10.3965 -1.7009 1.7863 44 1 14.9652 2.0154 1.9698 45 1 6.4194 -0.3281 0.2542 46 1 5.7949 -0.1688 1.9234 47 1 4.0266 -0.1672 0.1188 48 1 4.0134 -1.6012 -0.9378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718059149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = -108.004700 kcal Electronic energy + Delta-G solvation = -27240.593213 eV Core-core repulsion = 23419.867296 eV Total energy + Delta-G solvation = -3820.725917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50310 -40.84829 -39.20183 -37.83814 -34.87851 -34.60458 -33.00070 -31.99028 -30.90896 -30.44026 -28.66645 -27.66368 -26.12822 -25.01205 -23.38418 -22.27528 -21.07676 -20.67869 -19.96655 -19.53165 -18.20115 -17.97993 -17.44034 -16.90178 -16.86520 -16.64255 -16.45112 -15.90275 -15.53493 -15.36474 -15.12145 -14.75448 -14.53557 -14.36849 -14.22921 -14.10780 -13.93616 -13.75107 -13.58441 -13.32697 -13.20134 -13.14953 -13.02832 -12.87363 -12.65247 -12.57138 -12.17691 -12.08891 -11.78984 -11.75722 -11.67990 -11.51267 -11.25301 -11.14413 -11.01407 -10.82550 -10.31583 -9.74352 -9.64095 -8.71749 -8.35994 -6.16042 1.21304 1.43217 1.43414 1.51095 1.54085 1.60484 2.03456 2.07501 2.25763 2.97756 3.18760 3.37281 3.56808 3.63266 3.69915 3.83096 3.97541 4.10925 4.12738 4.17914 4.20863 4.29450 4.34326 4.39052 4.42282 4.45242 4.54242 4.61481 4.62088 4.66130 4.76700 4.83816 4.86578 4.89306 4.95183 5.02077 5.03889 5.12542 5.21472 5.27036 5.34584 5.38123 5.39159 5.53221 5.56694 6.17727 6.35793 6.43609 7.04216 7.06645 7.16802 8.73226 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.002008 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.212553 B =13940.316052 C =14848.732118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.495 3.505 3 O -0.610 6.610 4 N -0.611 5.611 5 C 0.098 3.902 6 C -0.132 4.132 7 C -0.111 4.111 8 C -0.075 4.075 9 H 0.068 0.932 10 C -0.080 4.080 11 H 0.097 0.903 12 C -0.108 4.108 13 C 0.087 3.913 14 N -0.618 5.618 15 C 0.542 3.458 16 O -0.572 6.572 17 C -0.116 4.116 18 S -0.156 6.156 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.105 3.895 28 C 0.107 3.893 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.112 -20.804 -0.113 38.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.286 3.714 3 O -0.492 6.492 4 N -0.343 5.343 5 C -0.023 4.023 6 C -0.170 4.170 7 C -0.148 4.148 8 C -0.095 4.095 9 H 0.087 0.913 10 C -0.100 4.100 11 H 0.115 0.885 12 C -0.145 4.145 13 C -0.035 4.035 14 N -0.353 5.353 15 C 0.330 3.670 16 O -0.451 6.451 17 C -0.267 4.267 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.018 4.018 28 C -0.016 4.016 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -31.770 -18.560 -1.074 36.810 hybrid contribution 1.474 -0.432 0.859 1.760 sum -30.296 -18.992 -0.215 35.757 Atomic orbital electron populations 1.21951 0.88053 1.05818 1.06454 1.21779 0.92582 0.82582 0.74445 1.90733 1.72283 1.33452 1.52735 1.48307 1.06575 1.07096 1.72311 1.22141 0.97795 0.82283 1.00106 1.21925 0.95751 1.01250 0.98053 1.21585 0.95142 0.94274 1.03832 1.21344 0.92491 0.97745 0.97912 0.91309 1.22327 0.94067 0.93048 1.00518 0.88464 1.22712 0.92261 1.01943 0.97627 1.22465 1.00400 0.83373 0.97244 1.48527 1.08473 1.22982 1.55292 1.19886 0.84801 0.82970 0.79356 1.90692 1.85378 1.25638 1.43399 1.23278 0.94754 1.04159 1.04526 1.85663 1.03359 1.30332 1.73554 1.23152 0.95668 1.10167 1.40350 0.89750 1.26200 1.02055 0.95249 0.95846 1.70194 1.26354 1.16443 1.41865 0.84953 0.75718 0.78235 0.78764 1.18441 1.20379 1.18540 1.22380 0.82019 0.99079 0.98308 1.21623 0.80287 1.00484 0.99247 0.86726 0.89939 0.86754 0.87125 0.89924 0.91877 0.87886 0.90652 0.89552 0.89342 0.86405 0.90566 0.90026 0.87566 0.87315 0.91957 0.93015 0.92544 0.92714 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.67 71.24 0.62 -0.74 16 2 C 0.50 9.59 7.81 87.66 0.68 10.28 16 3 O -0.61 -19.60 16.50 -3.03 -0.05 -19.65 16 4 N -0.61 -8.65 2.97 -819.00 -2.43 -11.09 16 5 C 0.10 0.43 6.34 86.36 0.55 0.98 16 6 C -0.13 -0.38 6.08 30.67 0.19 -0.19 16 7 C -0.11 -0.57 5.04 30.62 0.15 -0.41 16 8 C -0.08 -0.91 1.84 -10.73 -0.02 -0.93 16 9 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 10 C -0.08 -1.17 2.56 -9.40 -0.02 -1.20 16 11 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 12 C -0.11 -1.19 5.58 31.78 0.18 -1.01 16 13 C 0.09 1.66 6.50 86.70 0.56 2.22 16 14 N -0.62 -18.68 3.33 -811.37 -2.70 -21.38 16 15 C 0.54 22.74 7.87 87.66 0.69 23.43 16 16 O -0.57 -29.90 16.12 -3.03 -0.05 -29.95 16 17 C -0.12 -4.98 5.36 71.24 0.38 -4.59 16 18 S -0.16 -9.11 20.57 -56.49 -1.16 -10.28 16 19 C -0.55 -31.94 9.50 67.95 0.65 -31.30 16 20 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 21 C 0.01 0.65 5.49 84.85 0.47 1.11 16 22 N -0.91 -57.39 13.22 21.65 0.29 -57.11 16 23 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 C 0.10 2.76 5.41 86.85 0.47 3.23 16 28 C 0.11 1.87 5.40 86.35 0.47 2.33 16 29 H 0.11 0.33 7.69 -2.39 -0.02 0.31 16 30 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.11 0.33 7.94 -2.39 -0.02 0.31 16 32 H 0.11 -0.04 5.93 -2.39 -0.01 -0.05 16 33 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.09 0.25 7.46 -2.38 -0.02 0.23 16 38 H 0.09 0.85 8.01 -2.39 -0.02 0.83 16 39 H 0.12 0.60 8.11 -2.39 -0.02 0.58 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 43 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 44 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 46 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 47 H 0.05 1.43 6.42 -2.38 -0.02 1.41 16 48 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -92.02 394.44 2.85 -89.17 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.93 Total: 10.86 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.01 Total: 3.20 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -4.85 Total: -89.58 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.10 Total: -49.60 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.16 Total: -10.28 kcal Total: -92.02 2.85 -89.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718059149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.834 kcal (2) G-P(sol) polarization free energy of solvation -92.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds