Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32991 * 119.99910 * 2 1 4 4 C 1.47098 * 120.00423 * 352.77683 * 3 2 1 5 5 O 1.21615 * 119.99864 * 353.85848 * 4 3 2 6 6 N 1.34778 * 120.00374 * 173.85241 * 4 3 2 7 7 C 1.46496 * 119.99853 * 359.97438 * 6 4 3 8 8 C 1.46496 * 120.00110 * 180.02562 * 6 4 3 9 9 H 1.08997 * 109.47575 * 359.97438 * 8 6 4 10 10 C 1.52999 * 109.47180 * 239.99992 * 8 6 4 11 11 C 1.53005 * 109.47590 * 119.99819 * 8 6 4 12 12 N 1.46497 * 109.47109 * 305.00258 * 11 8 6 13 13 C 1.34776 * 120.00073 * 179.97438 * 12 11 8 14 14 O 1.21275 * 119.99878 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99981 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47127 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99727 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00166 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99396 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99555 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47570 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46968 * 120.00276 * 21 19 17 24 24 H 1.48497 * 109.47235 * 239.99815 * 21 19 17 25 25 C 1.50694 * 119.99837 * 180.02562 * 2 1 3 26 26 C 1.52998 * 117.50216 * 8.62266 * 25 2 1 27 27 C 1.52996 * 60.00184 * 252.50857 * 26 25 2 28 28 H 1.09001 * 109.47039 * 84.52986 * 1 2 3 29 29 H 1.09001 * 109.47177 * 204.53353 * 1 2 3 30 30 H 1.08999 * 109.46984 * 324.53339 * 1 2 3 31 31 H 1.08000 * 119.99876 * 173.04589 * 3 2 1 32 32 H 1.09006 * 109.46953 * 89.99919 * 7 6 4 33 33 H 1.09005 * 109.47423 * 209.99970 * 7 6 4 34 34 H 1.08999 * 109.47442 * 330.00152 * 7 6 4 35 35 H 1.08994 * 109.47457 * 179.97438 * 10 8 6 36 36 H 1.09005 * 109.47363 * 299.99955 * 10 8 6 37 37 H 1.09007 * 109.47305 * 59.99435 * 10 8 6 38 38 H 1.08999 * 109.46501 * 64.99939 * 11 8 6 39 39 H 1.08995 * 109.47176 * 184.99692 * 11 8 6 40 40 H 0.97001 * 119.99563 * 359.97438 * 12 11 8 41 41 H 1.08993 * 109.47068 * 300.00296 * 15 13 12 42 42 H 1.09008 * 109.47025 * 60.00070 * 15 13 12 43 43 H 0.97001 * 119.99981 * 179.97438 * 20 19 17 44 44 H 1.09004 * 115.55001 * 154.33263 * 25 2 1 45 45 H 1.08997 * 117.49691 * 359.97438 * 26 25 2 46 46 H 1.09000 * 117.50497 * 145.02077 * 26 25 2 47 47 H 1.09000 * 117.50299 * 252.50702 * 27 26 25 48 48 H 1.09004 * 117.51682 * 107.47302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4453 2.4206 -0.1602 5 8 0.2539 2.4125 -0.4040 6 7 2.0998 3.5923 -0.0366 7 6 3.5348 3.6022 0.2578 8 6 1.3759 4.8560 -0.1956 9 1 0.3271 4.6497 -0.4086 10 6 1.9843 5.6501 -1.3532 11 6 1.4838 5.6715 1.0946 12 7 1.0111 4.8655 2.2228 13 6 1.0146 5.3814 3.4679 14 8 1.4095 6.5127 3.6543 15 6 0.5277 4.5524 4.6284 16 16 0.6569 5.5165 6.1548 17 6 0.0410 4.3399 7.3128 18 1 -0.2728 3.3633 6.9752 19 6 -0.0399 4.6681 8.6590 20 7 0.3440 5.8579 9.0706 21 14 -0.6935 3.4210 9.8867 22 1 -1.0547 2.1685 9.1753 23 1 0.3517 3.1299 10.9007 24 1 -1.8963 3.9729 10.5602 25 6 2.2605 -1.3051 -0.0006 26 6 1.4517 -2.5877 -0.2046 27 6 2.0260 -2.2567 1.1743 28 1 -0.3633 0.0980 -1.0230 29 1 -0.3633 -0.9349 0.4267 30 1 -0.3633 0.8370 0.5963 31 1 3.2460 1.1552 0.1132 32 1 4.0973 3.5955 -0.6759 33 1 3.7832 4.4993 0.8251 34 1 3.7918 2.7194 0.8432 35 1 1.4455 6.5901 -1.4718 36 1 3.0333 5.8566 -1.1406 37 1 1.9074 5.0692 -2.2724 38 1 2.5236 5.9536 1.2600 39 1 0.8729 6.5700 1.0086 40 1 0.6955 3.9604 2.0736 41 1 -0.5122 4.2709 4.4628 42 1 1.1381 3.6533 4.7141 43 1 0.2872 6.0874 10.0114 44 1 3.2632 -1.2689 -0.4265 45 1 0.3746 -2.4876 -0.3380 46 1 1.9221 -3.3956 -0.7651 47 1 2.8744 -2.8468 1.5211 48 1 1.3271 -1.9386 1.9478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718138487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = -29.744560 kcal Electronic energy + Delta-G solvation = -27197.220354 eV Core-core repulsion = 23379.888051 eV Total energy + Delta-G solvation = -3817.332303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58242 -39.11959 -38.34934 -36.79596 -34.13399 -33.47817 -32.41649 -31.92114 -29.37941 -28.01302 -27.15998 -25.97048 -25.36929 -24.60576 -22.75912 -21.74385 -20.29861 -19.61988 -18.45951 -17.82652 -17.73763 -16.57539 -16.30031 -16.11322 -15.89384 -15.47708 -14.97113 -14.79445 -14.72818 -14.00950 -13.94510 -13.76259 -13.48567 -13.33017 -13.07543 -12.90716 -12.87939 -12.68449 -12.63044 -12.43978 -12.19590 -12.04737 -11.87926 -11.73983 -11.53557 -11.27319 -11.18325 -11.05972 -11.00418 -10.84210 -10.74472 -9.79395 -9.73618 -9.39809 -9.28888 -9.06556 -8.86333 -8.83551 -8.21691 -6.48342 -6.20608 -3.90723 1.03062 2.69205 2.98637 3.07020 3.12951 3.22406 3.29359 3.34742 3.51855 3.75324 4.06741 4.21668 4.43464 4.45627 4.49551 4.61981 4.68244 4.80895 4.83563 4.91426 5.00410 5.14652 5.17246 5.21589 5.22118 5.32346 5.34911 5.39012 5.45645 5.46096 5.55239 5.58876 5.68143 5.70026 5.71300 5.76282 5.79730 5.90205 5.92328 6.16989 6.17828 6.25875 6.32665 6.64466 7.14063 7.61395 7.73548 7.97741 8.36983 8.63758 9.24942 10.86915 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.002940 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.888123 B = 9520.782470 C =12122.088288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.007 3.993 3 C -0.235 4.235 4 C 0.548 3.452 5 O -0.539 6.539 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.124 3.876 9 H 0.109 0.891 10 C -0.156 4.156 11 C 0.112 3.888 12 N -0.734 5.734 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.137 4.137 26 C -0.172 4.172 27 C -0.165 4.165 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -12.999 -24.169 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.005 3.995 3 C -0.255 4.255 4 C 0.340 3.660 5 O -0.419 6.419 6 N -0.341 5.341 7 C -0.067 4.067 8 C 0.020 3.980 9 H 0.127 0.873 10 C -0.215 4.215 11 C -0.013 4.013 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.394 6.394 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.155 4.155 26 C -0.209 4.209 27 C -0.202 4.202 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.208 -10.954 -23.835 26.956 hybrid contribution -0.666 -2.461 0.519 2.602 sum 5.542 -13.415 -23.316 27.465 Atomic orbital electron populations 1.21201 0.90690 1.02742 1.03678 1.21836 0.96207 0.92393 0.89029 1.22297 1.00499 0.91573 1.11175 1.18570 0.86681 0.84091 0.76645 1.90769 1.15003 1.87210 1.48927 1.47764 1.09859 1.05483 1.71019 1.21832 0.80164 1.03858 1.00892 1.21370 0.98820 0.83297 0.94475 0.87334 1.22041 1.01612 1.00344 0.97490 1.21647 1.00620 0.94305 0.84769 1.45919 1.68045 1.18202 1.06686 1.20288 0.77398 0.87350 0.83123 1.90694 1.45670 1.18722 1.84305 1.23522 1.03826 1.03350 0.99626 1.85362 1.84700 1.20067 0.93191 1.22912 1.49438 1.01733 0.94159 0.90909 1.24993 0.95072 0.95970 0.97569 1.70028 1.44645 1.19452 1.16201 0.86118 0.78568 0.80527 0.80298 1.19615 1.20570 1.20549 1.21294 1.00157 0.88763 1.05248 1.23073 1.00486 0.97457 0.99841 1.23012 1.03811 1.01639 0.91690 0.90149 0.92471 0.88926 0.85361 0.92540 0.90587 0.90629 0.90884 0.91909 0.91844 0.91299 0.90436 0.76842 0.89308 0.89416 0.92257 0.86629 0.87949 0.88266 0.88092 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 7.90 36.01 0.28 -0.93 16 2 C 0.01 0.06 5.81 -101.17 -0.59 -0.52 16 3 C -0.23 -2.12 8.78 -37.81 -0.33 -2.46 16 4 C 0.55 5.96 7.18 -12.67 -0.09 5.87 16 5 O -0.54 -7.24 12.61 5.26 0.07 -7.18 16 6 N -0.61 -5.66 2.24 -175.33 -0.39 -6.05 16 7 C 0.08 0.54 9.17 59.84 0.55 1.09 16 8 C 0.12 1.18 2.80 -67.93 -0.19 0.99 16 9 H 0.11 1.20 6.90 -51.93 -0.36 0.85 16 10 C -0.16 -1.13 9.19 37.16 0.34 -0.79 16 11 C 0.11 1.32 4.92 -4.04 -0.02 1.30 16 12 N -0.73 -10.64 5.39 -60.30 -0.32 -10.96 16 13 C 0.53 10.29 7.85 -10.99 -0.09 10.21 16 14 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 15 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.14 -0.95 6.01 -91.78 -0.55 -1.50 16 26 C -0.17 -1.03 9.76 -26.73 -0.26 -1.30 16 27 C -0.16 -1.07 10.10 -26.73 -0.27 -1.34 16 28 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 29 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 30 H 0.09 1.08 6.14 -51.93 -0.32 0.76 16 31 H 0.13 0.90 6.35 -52.49 -0.33 0.57 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.58 6.53 -51.93 -0.34 0.24 16 34 H 0.08 0.49 6.19 -51.93 -0.32 0.17 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.82 6.88 -51.93 -0.36 0.46 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.40 5.36 7.87 -40.82 -0.32 5.04 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.62 6.42 -51.93 -0.33 0.29 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -35.34 404.21 -9.37 -44.70 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.60 Total: 3.66 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.79 Total: -5.49 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.02 Total: -42.64 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.34 -9.37 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.960 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds