Wall clock time and date at job start Sat Apr 11 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32991 * 119.99910 * 2 1 4 4 C 1.47098 * 120.00423 * 352.77683 * 3 2 1 5 5 O 1.21615 * 119.99864 * 353.85848 * 4 3 2 6 6 N 1.34778 * 120.00374 * 173.85241 * 4 3 2 7 7 C 1.46496 * 119.99853 * 359.97438 * 6 4 3 8 8 C 1.46496 * 120.00110 * 180.02562 * 6 4 3 9 9 H 1.08997 * 109.47575 * 359.97438 * 8 6 4 10 10 C 1.52999 * 109.47180 * 239.99992 * 8 6 4 11 11 C 1.53005 * 109.47590 * 119.99819 * 8 6 4 12 12 N 1.46497 * 109.47109 * 305.00258 * 11 8 6 13 13 C 1.34776 * 120.00073 * 179.97438 * 12 11 8 14 14 O 1.21275 * 119.99878 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99981 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47127 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99727 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00166 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99396 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99555 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47570 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46968 * 120.00276 * 21 19 17 24 24 H 1.48497 * 109.47235 * 239.99815 * 21 19 17 25 25 C 1.50694 * 119.99837 * 180.02562 * 2 1 3 26 26 C 1.52998 * 117.50216 * 8.62266 * 25 2 1 27 27 C 1.52996 * 60.00184 * 252.50857 * 26 25 2 28 28 H 1.09001 * 109.47039 * 84.52986 * 1 2 3 29 29 H 1.09001 * 109.47177 * 204.53353 * 1 2 3 30 30 H 1.08999 * 109.46984 * 324.53339 * 1 2 3 31 31 H 1.08000 * 119.99876 * 173.04589 * 3 2 1 32 32 H 1.09006 * 109.46953 * 89.99919 * 7 6 4 33 33 H 1.09005 * 109.47423 * 209.99970 * 7 6 4 34 34 H 1.08999 * 109.47442 * 330.00152 * 7 6 4 35 35 H 1.08994 * 109.47457 * 179.97438 * 10 8 6 36 36 H 1.09005 * 109.47363 * 299.99955 * 10 8 6 37 37 H 1.09007 * 109.47305 * 59.99435 * 10 8 6 38 38 H 1.08999 * 109.46501 * 64.99939 * 11 8 6 39 39 H 1.08995 * 109.47176 * 184.99692 * 11 8 6 40 40 H 0.97001 * 119.99563 * 359.97438 * 12 11 8 41 41 H 1.08993 * 109.47068 * 300.00296 * 15 13 12 42 42 H 1.09008 * 109.47025 * 60.00070 * 15 13 12 43 43 H 0.97001 * 119.99981 * 179.97438 * 20 19 17 44 44 H 1.09004 * 115.55001 * 154.33263 * 25 2 1 45 45 H 1.08997 * 117.49691 * 359.97438 * 26 25 2 46 46 H 1.09000 * 117.50497 * 145.02077 * 26 25 2 47 47 H 1.09000 * 117.50299 * 252.50702 * 27 26 25 48 48 H 1.09004 * 117.51682 * 107.47302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4453 2.4206 -0.1602 5 8 0.2539 2.4125 -0.4040 6 7 2.0998 3.5923 -0.0366 7 6 3.5348 3.6022 0.2578 8 6 1.3759 4.8560 -0.1956 9 1 0.3271 4.6497 -0.4086 10 6 1.9843 5.6501 -1.3532 11 6 1.4838 5.6715 1.0946 12 7 1.0111 4.8655 2.2228 13 6 1.0146 5.3814 3.4679 14 8 1.4095 6.5127 3.6543 15 6 0.5277 4.5524 4.6284 16 16 0.6569 5.5165 6.1548 17 6 0.0410 4.3399 7.3128 18 1 -0.2728 3.3633 6.9752 19 6 -0.0399 4.6681 8.6590 20 7 0.3440 5.8579 9.0706 21 14 -0.6935 3.4210 9.8867 22 1 -1.0547 2.1685 9.1753 23 1 0.3517 3.1299 10.9007 24 1 -1.8963 3.9729 10.5602 25 6 2.2605 -1.3051 -0.0006 26 6 1.4517 -2.5877 -0.2046 27 6 2.0260 -2.2567 1.1743 28 1 -0.3633 0.0980 -1.0230 29 1 -0.3633 -0.9349 0.4267 30 1 -0.3633 0.8370 0.5963 31 1 3.2460 1.1552 0.1132 32 1 4.0973 3.5955 -0.6759 33 1 3.7832 4.4993 0.8251 34 1 3.7918 2.7194 0.8432 35 1 1.4455 6.5901 -1.4718 36 1 3.0333 5.8566 -1.1406 37 1 1.9074 5.0692 -2.2724 38 1 2.5236 5.9536 1.2600 39 1 0.8729 6.5700 1.0086 40 1 0.6955 3.9604 2.0736 41 1 -0.5122 4.2709 4.4628 42 1 1.1381 3.6533 4.7141 43 1 0.2872 6.0874 10.0114 44 1 3.2632 -1.2689 -0.4265 45 1 0.3746 -2.4876 -0.3380 46 1 1.9221 -3.3956 -0.7651 47 1 2.8744 -2.8468 1.5211 48 1 1.3271 -1.9386 1.9478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718138487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:12 Heat of formation + Delta-G solvation = -51.709076 kcal Electronic energy + Delta-G solvation = -27198.172807 eV Core-core repulsion = 23379.888051 eV Total energy + Delta-G solvation = -3818.284756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44971 -40.49242 -39.00768 -37.69747 -35.30722 -34.60275 -34.21413 -32.84160 -30.90308 -28.73741 -27.80774 -27.76010 -26.81715 -25.30031 -23.22619 -22.48418 -21.77904 -20.44117 -19.78317 -19.13115 -18.50549 -17.88652 -17.55743 -16.92691 -16.89747 -16.81479 -16.38644 -16.27830 -15.87225 -15.36999 -14.93559 -14.71142 -14.53610 -14.45253 -14.14005 -14.00230 -13.85363 -13.65735 -13.42814 -13.35805 -13.18181 -13.05912 -12.92370 -12.88982 -12.66343 -12.57903 -12.45417 -12.16179 -11.98103 -11.83520 -11.72975 -11.33222 -11.17298 -11.03027 -10.55852 -10.31513 -10.17806 -9.99223 -9.56541 -8.68971 -8.36552 -6.14802 0.31987 1.24220 1.40376 1.44673 1.55213 1.56806 1.95192 2.22168 2.24453 2.27814 2.97593 3.00863 3.28913 3.44076 3.63687 3.86769 3.88636 3.95933 3.98335 4.09319 4.14670 4.19341 4.22169 4.24257 4.30968 4.44237 4.55417 4.65302 4.67652 4.70940 4.74748 4.77136 4.82634 4.94160 4.99272 5.00116 5.10725 5.15249 5.22049 5.24839 5.34783 5.40291 5.48545 5.53813 5.62212 6.18316 6.35622 6.40058 7.04802 7.14582 7.18009 8.72987 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.002940 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.888123 B = 9520.782470 C =12122.088288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.004 3.996 3 C -0.241 4.241 4 C 0.540 3.460 5 O -0.573 6.573 6 N -0.606 5.606 7 C 0.071 3.929 8 C 0.132 3.868 9 H 0.093 0.907 10 C -0.149 4.149 11 C 0.111 3.889 12 N -0.712 5.712 13 C 0.536 3.464 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.142 6.142 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.141 4.141 26 C -0.168 4.168 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.405 0.595 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -15.277 -25.167 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.261 4.261 4 C 0.333 3.667 5 O -0.455 6.455 6 N -0.339 5.339 7 C -0.071 4.071 8 C 0.028 3.972 9 H 0.111 0.889 10 C -0.207 4.207 11 C -0.013 4.013 12 N -0.364 5.364 13 C 0.322 3.678 14 O -0.438 6.438 15 C -0.282 4.282 16 S 0.085 5.915 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.159 4.159 26 C -0.204 4.204 27 C -0.204 4.204 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.240 0.760 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.117 0.883 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.034 -13.249 -24.881 29.053 hybrid contribution -0.918 -1.760 0.703 2.106 sum 6.116 -15.009 -24.178 29.107 Atomic orbital electron populations 1.21101 0.91699 1.02302 1.02859 1.22011 0.95781 0.93510 0.88474 1.22425 1.01490 0.90657 1.11559 1.18950 0.86430 0.85013 0.76276 1.90760 1.16458 1.87709 1.50591 1.47846 1.10729 1.04920 1.70370 1.22012 0.78849 1.04072 1.02197 1.21259 0.98480 0.83520 0.93941 0.88921 1.21991 1.02224 1.00252 0.96251 1.21856 1.00679 0.94273 0.84534 1.45728 1.66366 1.18535 1.05816 1.19968 0.77242 0.86534 0.84042 1.90684 1.47882 1.20275 1.84987 1.23363 1.05146 1.02877 0.96823 1.85488 1.85160 1.23233 0.97587 1.23223 1.49683 1.01889 0.94790 0.90205 1.26121 0.94987 0.98174 0.99743 1.70179 1.45800 1.21749 1.16921 0.84905 0.77970 0.77819 0.77248 1.18228 1.19658 1.19848 1.21352 1.00760 0.87942 1.05879 1.23160 1.00389 0.97315 0.99570 1.23058 1.04136 1.01612 0.91573 0.90867 0.91300 0.91279 0.83122 0.90328 0.90966 0.89804 0.90084 0.90690 0.91566 0.90719 0.90713 0.75953 0.88036 0.87651 0.91901 0.85128 0.88300 0.86694 0.86818 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 7.90 71.24 0.56 -1.79 16 2 C 0.00 0.07 5.81 -17.62 -0.10 -0.03 16 3 C -0.24 -3.98 8.78 23.43 0.21 -3.78 16 4 C 0.54 11.26 7.18 86.57 0.62 11.88 16 5 O -0.57 -15.46 12.61 -4.08 -0.05 -15.51 16 6 N -0.61 -10.36 2.24 -826.87 -1.86 -12.22 16 7 C 0.07 0.84 9.17 127.77 1.17 2.01 16 8 C 0.13 2.37 2.80 44.99 0.13 2.49 16 9 H 0.09 2.02 6.90 -2.39 -0.02 2.00 16 10 C -0.15 -1.87 9.19 71.98 0.66 -1.21 16 11 C 0.11 2.52 4.92 86.38 0.42 2.94 16 12 N -0.71 -20.08 5.39 -463.07 -2.49 -22.57 16 13 C 0.54 20.67 7.85 87.66 0.69 21.36 16 14 O -0.56 -26.15 15.86 -3.01 -0.05 -26.20 16 15 C -0.13 -5.48 6.16 71.24 0.44 -5.04 16 16 S -0.14 -8.01 20.57 -56.49 -1.16 -9.18 16 17 C -0.55 -31.85 9.50 67.96 0.65 -31.20 16 18 H 0.08 4.36 7.80 -2.92 -0.02 4.34 16 19 C 0.01 0.84 5.49 84.86 0.47 1.31 16 20 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 21 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C -0.14 -1.67 6.01 -11.54 -0.07 -1.74 16 26 C -0.17 -1.68 9.76 30.59 0.30 -1.38 16 27 C -0.17 -1.86 10.10 30.59 0.31 -1.55 16 28 H 0.07 1.47 8.04 -2.39 -0.02 1.45 16 29 H 0.07 1.09 6.31 -2.39 -0.02 1.07 16 30 H 0.07 1.66 6.14 -2.39 -0.01 1.64 16 31 H 0.15 1.72 6.35 -2.91 -0.02 1.70 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.94 6.53 -2.38 -0.02 0.93 16 34 H 0.08 0.88 6.19 -2.39 -0.01 0.86 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.78 7.67 -2.38 -0.02 0.76 16 37 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 1.67 6.88 -2.39 -0.02 1.66 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.41 10.54 7.87 -92.71 -0.73 9.81 16 41 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.10 1.06 6.42 -2.39 -0.02 1.04 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -78.31 404.21 3.39 -74.92 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.24 Total: 26.32 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 6.45 Total: -5.72 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -4.06 Total: -90.67 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.10 Total: -41.71 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -78.31 3.39 -74.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.214 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds