Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51577 * 135.78026 * 2 1 4 4 C 1.53847 * 86.75380 * 154.86469 * 3 2 1 5 5 C 1.53000 * 113.65447 * 270.21621 * 4 3 2 6 6 C 1.50700 * 113.65929 * 139.27119 * 4 3 2 7 7 O 1.21279 * 119.99993 * 233.75780 * 6 4 3 8 8 N 1.34780 * 120.00072 * 53.75358 * 6 4 3 9 9 C 1.46499 * 119.99872 * 3.77824 * 8 6 4 10 10 C 1.46502 * 120.00135 * 183.76967 * 8 6 4 11 11 H 1.09008 * 109.46804 * 0.02562 * 10 8 6 12 12 C 1.52998 * 109.46788 * 120.00101 * 10 8 6 13 13 C 1.52996 * 109.47430 * 240.00771 * 10 8 6 14 14 N 1.46494 * 109.47417 * 54.99787 * 13 10 8 15 15 C 1.34775 * 120.00413 * 180.02562 * 14 13 10 16 16 O 1.21289 * 119.99772 * 359.72450 * 15 14 13 17 17 C 1.50696 * 120.00282 * 179.72902 * 15 14 13 18 18 S 1.80998 * 109.47184 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00480 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99636 * 359.97438 * 19 18 17 21 21 C 1.38790 * 120.00478 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00265 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00034 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47103 * 89.99695 * 23 21 19 25 25 H 1.48499 * 109.47199 * 209.99928 * 23 21 19 26 26 H 1.48500 * 109.46856 * 329.99901 * 23 21 19 27 27 C 1.51580 * 135.77938 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00173 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.67217 * 40.39954 * 3 2 1 31 31 H 1.09000 * 113.66790 * 269.32042 * 3 2 1 32 32 H 1.08998 * 109.47782 * 281.69888 * 5 4 3 33 33 H 1.08999 * 109.47476 * 41.69870 * 5 4 3 34 34 H 1.09007 * 109.46873 * 161.69863 * 5 4 3 35 35 H 1.08993 * 109.47165 * 274.87594 * 9 8 6 36 36 H 1.08996 * 109.47394 * 34.88128 * 9 8 6 37 37 H 1.08999 * 109.47229 * 154.87798 * 9 8 6 38 38 H 1.08999 * 109.46982 * 60.00924 * 12 10 8 39 39 H 1.09005 * 109.46923 * 179.97438 * 12 10 8 40 40 H 1.08992 * 109.47728 * 300.00265 * 12 10 8 41 41 H 1.09005 * 109.47112 * 294.99803 * 13 10 8 42 42 H 1.08997 * 109.46866 * 175.00071 * 13 10 8 43 43 H 0.97005 * 119.99976 * 359.72702 * 14 13 10 44 44 H 1.08999 * 109.47025 * 299.99109 * 17 15 14 45 45 H 1.08993 * 109.47712 * 59.99903 * 17 15 14 46 46 H 0.97001 * 119.99959 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.66697 * 90.67281 * 27 2 1 48 48 H 1.08992 * 113.66820 * 319.59956 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3036 -0.0002 0.6524 5 6 3.2466 0.0010 2.1814 6 6 4.7130 -0.0001 0.1187 7 8 5.2004 -1.0259 -0.3067 8 7 5.4317 1.1401 0.1140 9 6 4.8739 2.3600 0.7030 10 6 6.7708 1.1594 -0.4800 11 1 7.0122 0.1682 -0.8641 12 6 6.8057 2.1725 -1.6260 13 6 7.7951 1.5577 0.5844 14 7 7.6793 0.6580 1.7346 15 6 8.4872 0.8201 2.8012 16 8 9.3135 1.7079 2.8066 17 6 8.3638 -0.1017 3.9869 18 16 9.5767 0.3686 5.2454 19 6 9.2196 -0.8365 6.4802 20 1 8.4400 -1.5652 6.3140 21 6 9.9401 -0.8495 7.6663 22 7 9.6737 -1.7501 8.5885 23 14 11.2881 0.4113 7.9541 24 1 10.7105 1.6132 8.6076 25 1 12.3344 -0.1740 8.8304 26 1 11.8911 0.7970 6.6530 27 6 2.3963 -1.0572 -0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 2.1797 1.9072 0.6470 31 1 2.7181 1.3538 -0.9983 32 1 3.8503 0.8226 2.5669 33 1 2.2136 0.1256 2.5063 34 1 3.6351 -0.9444 2.5602 35 1 4.2571 2.8711 -0.0361 36 1 4.2640 2.0998 1.5680 37 1 5.6858 3.0167 1.0153 38 1 6.5642 3.1636 -1.2422 39 1 7.8022 2.1872 -2.0676 40 1 6.0760 1.8887 -2.3842 41 1 7.6068 2.5826 0.9044 42 1 8.7994 1.4862 0.1668 43 1 7.0182 -0.0519 1.7305 44 1 7.3595 -0.0254 4.4035 45 1 8.5489 -1.1280 3.6702 46 1 10.1770 -1.7589 9.4177 47 1 2.7180 -1.3534 -0.9988 48 1 2.1797 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718138766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = -28.334428 kcal Electronic energy + Delta-G solvation = -27848.948456 eV Core-core repulsion = 24031.677301 eV Total energy + Delta-G solvation = -3817.271155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32502 -39.45192 -38.45516 -36.76743 -34.22690 -32.52338 -32.42862 -31.26898 -29.53113 -28.16647 -27.42678 -26.27776 -26.05057 -25.53712 -24.12045 -20.91987 -20.42339 -19.19441 -18.27107 -17.86892 -17.35067 -16.72565 -16.43786 -16.09122 -15.62654 -15.35518 -15.08431 -14.96006 -14.85289 -14.45985 -14.15167 -13.93317 -13.64233 -13.34914 -13.22042 -13.04485 -12.83770 -12.79203 -12.65252 -12.54090 -12.52023 -12.26201 -12.18793 -11.89505 -11.74025 -11.34849 -11.26387 -11.19305 -11.00790 -10.60294 -10.59344 -9.89631 -9.85806 -9.54655 -9.50568 -9.04456 -9.02010 -8.96089 -8.49925 -6.91418 -6.28361 -4.00086 1.80498 2.29065 2.56796 2.78071 2.97479 3.31141 3.34428 3.50575 3.66492 3.86003 3.96905 4.09331 4.28921 4.33364 4.49583 4.52766 4.68685 4.73334 4.77510 4.89128 4.95671 5.10273 5.10580 5.18413 5.21024 5.23940 5.24729 5.28500 5.34407 5.40145 5.43107 5.53677 5.56768 5.57979 5.66059 5.74085 5.76792 5.80678 5.86796 6.02507 6.02741 6.16550 6.50252 6.51966 6.99372 7.60066 7.83637 7.94811 8.42642 8.48312 9.17736 10.80936 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002671 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.832920 B =10480.285174 C =11808.545512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.150 4.150 3 C -0.093 4.093 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.531 3.469 7 O -0.534 6.534 8 N -0.607 5.607 9 C 0.069 3.931 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.156 4.156 13 C 0.112 3.888 14 N -0.732 5.732 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.079 4.079 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.399 0.601 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.098 0.902 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 7.970 -21.839 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.130 4.130 4 C -0.102 4.102 5 C -0.187 4.187 6 C 0.319 3.681 7 O -0.410 6.410 8 N -0.341 5.341 9 C -0.074 4.074 10 C 0.018 3.982 11 H 0.127 0.873 12 C -0.215 4.215 13 C -0.013 4.013 14 N -0.387 5.387 15 C 0.317 3.683 16 O -0.396 6.396 17 C -0.274 4.274 18 S 0.086 5.914 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.117 4.117 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.234 0.766 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.143 8.834 -21.879 28.588 hybrid contribution -0.751 -0.889 0.430 1.241 sum -16.894 7.944 -21.449 28.436 Atomic orbital electron populations 1.22891 0.93377 1.02261 1.02001 1.22773 0.93850 0.98018 1.00394 1.22439 0.93289 0.96079 1.01156 1.21900 0.90746 0.99867 0.97703 1.21658 1.03283 1.03444 0.90352 1.20446 0.87039 0.82760 0.77854 1.90718 1.71507 1.31653 1.47138 1.47889 1.16458 1.10628 1.59078 1.22042 0.99877 0.86915 0.98578 1.21411 0.81279 1.02440 0.93052 0.87338 1.22042 1.03085 0.98880 0.97470 1.21655 0.99036 0.94363 0.86230 1.45887 1.39786 1.35493 1.17503 1.20267 0.80164 0.84777 0.83080 1.90697 1.34962 1.33337 1.80591 1.23267 1.05320 1.01774 0.97064 1.84748 1.45944 1.46190 1.14566 1.22316 1.24684 1.17496 1.02329 0.89407 1.24715 0.96610 0.95393 0.94618 1.69942 1.40649 1.33869 1.07266 0.86732 0.82323 0.81807 0.80968 1.19226 1.19942 1.15920 1.22191 0.92016 0.95833 1.01618 0.87608 0.87536 0.89851 0.88794 0.91213 0.90909 0.91076 0.92308 0.90345 0.90497 0.91847 0.90823 0.91814 0.91225 0.90365 0.76647 0.88687 0.88515 0.91946 0.88377 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.71 29.01 0.43 -0.59 16 2 C -0.15 -1.05 6.59 -100.29 -0.66 -1.71 16 3 C -0.09 -0.57 5.00 -27.01 -0.14 -0.70 16 4 C -0.10 -0.79 0.70 -154.87 -0.11 -0.90 16 5 C -0.13 -1.00 8.76 37.16 0.33 -0.68 16 6 C 0.53 5.33 6.30 -10.98 -0.07 5.26 16 7 O -0.53 -7.28 15.81 5.56 0.09 -7.19 16 8 N -0.61 -4.98 2.24 -173.94 -0.39 -5.37 16 9 C 0.07 0.42 8.03 59.85 0.48 0.90 16 10 C 0.12 1.05 2.79 -67.93 -0.19 0.86 16 11 H 0.11 1.13 6.91 -51.92 -0.36 0.77 16 12 C -0.16 -0.98 9.19 37.16 0.34 -0.64 16 13 C 0.11 1.21 4.93 -4.05 -0.02 1.19 16 14 N -0.73 -9.84 5.39 -60.30 -0.32 -10.16 16 15 C 0.53 9.57 7.85 -10.99 -0.09 9.49 16 16 O -0.52 -11.18 15.86 5.55 0.09 -11.09 16 17 C -0.12 -2.46 6.16 36.00 0.22 -2.23 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 23 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 C -0.08 -0.65 6.87 -27.01 -0.19 -0.84 16 28 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 30 H 0.08 0.41 7.74 -51.93 -0.40 0.01 16 31 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 33 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.26 7.51 -51.93 -0.39 -0.13 16 36 H 0.08 0.46 4.46 -51.93 -0.23 0.22 16 37 H 0.08 0.49 6.53 -51.93 -0.34 0.15 16 38 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.74 6.87 -51.93 -0.36 0.39 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.40 5.04 7.86 -40.82 -0.32 4.72 16 44 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.10 0.88 7.95 -51.93 -0.41 0.47 16 48 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -35.13 398.56 -7.63 -42.76 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.72 Total: 2.14 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.56 Total: -2.70 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.06 Total: -41.51 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.18 Total: -18.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.13 -7.63 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.428 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds