Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51577 * 135.78026 * 2 1 4 4 C 1.53847 * 86.75380 * 154.86469 * 3 2 1 5 5 C 1.53000 * 113.65447 * 270.21621 * 4 3 2 6 6 C 1.50700 * 113.65929 * 139.27119 * 4 3 2 7 7 O 1.21279 * 119.99993 * 233.75780 * 6 4 3 8 8 N 1.34780 * 120.00072 * 53.75358 * 6 4 3 9 9 C 1.46499 * 119.99872 * 3.77824 * 8 6 4 10 10 C 1.46502 * 120.00135 * 183.76967 * 8 6 4 11 11 H 1.09008 * 109.46804 * 0.02562 * 10 8 6 12 12 C 1.52998 * 109.46788 * 120.00101 * 10 8 6 13 13 C 1.52996 * 109.47430 * 240.00771 * 10 8 6 14 14 N 1.46494 * 109.47417 * 54.99787 * 13 10 8 15 15 C 1.34775 * 120.00413 * 180.02562 * 14 13 10 16 16 O 1.21289 * 119.99772 * 359.72450 * 15 14 13 17 17 C 1.50696 * 120.00282 * 179.72902 * 15 14 13 18 18 S 1.80998 * 109.47184 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00480 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99636 * 359.97438 * 19 18 17 21 21 C 1.38790 * 120.00478 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00265 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00034 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47103 * 89.99695 * 23 21 19 25 25 H 1.48499 * 109.47199 * 209.99928 * 23 21 19 26 26 H 1.48500 * 109.46856 * 329.99901 * 23 21 19 27 27 C 1.51580 * 135.77938 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00173 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.67217 * 40.39954 * 3 2 1 31 31 H 1.09000 * 113.66790 * 269.32042 * 3 2 1 32 32 H 1.08998 * 109.47782 * 281.69888 * 5 4 3 33 33 H 1.08999 * 109.47476 * 41.69870 * 5 4 3 34 34 H 1.09007 * 109.46873 * 161.69863 * 5 4 3 35 35 H 1.08993 * 109.47165 * 274.87594 * 9 8 6 36 36 H 1.08996 * 109.47394 * 34.88128 * 9 8 6 37 37 H 1.08999 * 109.47229 * 154.87798 * 9 8 6 38 38 H 1.08999 * 109.46982 * 60.00924 * 12 10 8 39 39 H 1.09005 * 109.46923 * 179.97438 * 12 10 8 40 40 H 1.08992 * 109.47728 * 300.00265 * 12 10 8 41 41 H 1.09005 * 109.47112 * 294.99803 * 13 10 8 42 42 H 1.08997 * 109.46866 * 175.00071 * 13 10 8 43 43 H 0.97005 * 119.99976 * 359.72702 * 14 13 10 44 44 H 1.08999 * 109.47025 * 299.99109 * 17 15 14 45 45 H 1.08993 * 109.47712 * 59.99903 * 17 15 14 46 46 H 0.97001 * 119.99959 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.66697 * 90.67281 * 27 2 1 48 48 H 1.08992 * 113.66820 * 319.59956 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3036 -0.0002 0.6524 5 6 3.2466 0.0010 2.1814 6 6 4.7130 -0.0001 0.1187 7 8 5.2004 -1.0259 -0.3067 8 7 5.4317 1.1401 0.1140 9 6 4.8739 2.3600 0.7030 10 6 6.7708 1.1594 -0.4800 11 1 7.0122 0.1682 -0.8641 12 6 6.8057 2.1725 -1.6260 13 6 7.7951 1.5577 0.5844 14 7 7.6793 0.6580 1.7346 15 6 8.4872 0.8201 2.8012 16 8 9.3135 1.7079 2.8066 17 6 8.3638 -0.1017 3.9869 18 16 9.5767 0.3686 5.2454 19 6 9.2196 -0.8365 6.4802 20 1 8.4400 -1.5652 6.3140 21 6 9.9401 -0.8495 7.6663 22 7 9.6737 -1.7501 8.5885 23 14 11.2881 0.4113 7.9541 24 1 10.7105 1.6132 8.6076 25 1 12.3344 -0.1740 8.8304 26 1 11.8911 0.7970 6.6530 27 6 2.3963 -1.0572 -0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 2.1797 1.9072 0.6470 31 1 2.7181 1.3538 -0.9983 32 1 3.8503 0.8226 2.5669 33 1 2.2136 0.1256 2.5063 34 1 3.6351 -0.9444 2.5602 35 1 4.2571 2.8711 -0.0361 36 1 4.2640 2.0998 1.5680 37 1 5.6858 3.0167 1.0153 38 1 6.5642 3.1636 -1.2422 39 1 7.8022 2.1872 -2.0676 40 1 6.0760 1.8887 -2.3842 41 1 7.6068 2.5826 0.9044 42 1 8.7994 1.4862 0.1668 43 1 7.0182 -0.0519 1.7305 44 1 7.3595 -0.0254 4.4035 45 1 8.5489 -1.1280 3.6702 46 1 10.1770 -1.7589 9.4177 47 1 2.7180 -1.3534 -0.9988 48 1 2.1797 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718138766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = -51.180859 kcal Electronic energy + Delta-G solvation = -27849.939152 eV Core-core repulsion = 24031.677301 eV Total energy + Delta-G solvation = -3818.261851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02626 -40.70754 -39.26090 -37.64818 -35.32751 -34.68721 -33.30342 -31.94477 -30.91883 -28.72979 -27.99792 -27.91534 -26.92663 -26.77571 -24.83916 -21.82337 -21.62851 -20.02901 -19.74387 -18.79656 -18.10239 -17.93023 -17.62459 -17.14766 -17.01709 -16.59862 -16.39017 -15.77665 -15.67332 -15.54935 -15.18605 -14.99050 -14.80656 -14.73022 -14.28926 -14.01421 -13.90662 -13.57367 -13.41301 -13.35812 -13.25928 -13.07461 -13.06138 -13.00067 -12.88333 -12.81775 -12.60458 -12.36176 -12.02338 -11.87853 -11.79317 -11.18298 -11.12216 -11.07951 -10.66027 -10.57509 -10.20144 -10.01187 -9.73927 -9.01805 -8.52800 -6.24262 0.95903 1.30458 1.30726 1.45349 1.50131 1.53462 1.54141 1.90191 2.20378 2.25198 2.68830 2.85268 3.27074 3.38227 3.56019 3.58954 3.75435 3.85748 3.92352 4.03454 4.15017 4.18594 4.22814 4.40434 4.42466 4.55470 4.58917 4.66446 4.70899 4.74935 4.76656 4.79297 4.82305 4.87879 4.96251 4.98715 5.06784 5.20001 5.21857 5.27575 5.32775 5.53090 5.57420 5.69182 6.00544 6.09836 6.29111 6.32958 6.91821 7.08557 7.09255 8.59865 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002671 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.832920 B =10480.285174 C =11808.545512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.079 4.079 4 C -0.098 4.098 5 C -0.128 4.128 6 C 0.527 3.473 7 O -0.578 6.578 8 N -0.602 5.602 9 C 0.062 3.938 10 C 0.128 3.872 11 H 0.089 0.911 12 C -0.149 4.149 13 C 0.111 3.889 14 N -0.712 5.712 15 C 0.538 3.462 16 O -0.556 6.556 17 C -0.114 4.114 18 S -0.165 6.165 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.916 3.084 24 H -0.259 1.259 25 H -0.259 1.259 26 H -0.236 1.236 27 C -0.088 4.088 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.405 0.595 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.277 0.723 47 H 0.084 0.916 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.835 10.336 -23.005 31.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.116 4.116 4 C -0.101 4.101 5 C -0.185 4.185 6 C 0.316 3.684 7 O -0.458 6.458 8 N -0.334 5.334 9 C -0.080 4.080 10 C 0.024 3.976 11 H 0.107 0.893 12 C -0.207 4.207 13 C -0.013 4.013 14 N -0.364 5.364 15 C 0.324 3.676 16 O -0.434 6.434 17 C -0.265 4.265 18 S 0.062 5.938 19 C -0.679 4.679 20 H 0.077 0.923 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.738 3.262 24 H -0.184 1.184 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.125 4.125 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.240 0.760 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.164 11.213 -23.069 30.862 hybrid contribution -0.591 -1.704 0.679 1.927 sum -17.755 9.509 -22.390 30.116 Atomic orbital electron populations 1.23120 0.93113 1.03233 1.00234 1.22756 0.94108 0.97521 1.01967 1.22382 0.91805 0.95932 1.01448 1.21897 0.89598 1.00871 0.97765 1.21644 1.03998 1.02732 0.90128 1.20845 0.87787 0.82478 0.77259 1.90697 1.72531 1.33301 1.49254 1.47956 1.16040 1.10965 1.58431 1.22264 1.00327 0.85926 0.99477 1.21324 0.80944 1.02273 0.93032 0.89267 1.21993 1.03734 0.98612 0.96344 1.21878 0.99810 0.94149 0.85454 1.45735 1.38297 1.35510 1.16904 1.19841 0.80425 0.83944 0.83415 1.90688 1.36701 1.34742 1.81310 1.23262 1.04173 1.02677 0.96365 1.84597 1.48566 1.45246 1.15412 1.22458 1.23928 1.17759 1.03723 0.92288 1.25598 0.98824 0.97252 0.94399 1.70023 1.42041 1.35492 1.08005 0.85842 0.79826 0.79575 0.80971 1.18396 1.18336 1.16007 1.22181 0.93297 0.96249 1.00782 0.85961 0.87258 0.87883 0.88423 0.90612 0.89784 0.92813 0.89824 0.89859 0.90344 0.90378 0.90099 0.91525 0.90235 0.90551 0.75964 0.87146 0.87767 0.91315 0.89792 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 14.71 67.78 1.00 -0.60 16 2 C -0.16 -2.01 6.59 -15.98 -0.11 -2.12 16 3 C -0.08 -0.78 5.00 30.41 0.15 -0.63 16 4 C -0.10 -1.46 0.70 -52.41 -0.04 -1.50 16 5 C -0.13 -1.83 8.76 71.98 0.63 -1.20 16 6 C 0.53 10.23 6.30 87.66 0.55 10.79 16 7 O -0.58 -16.09 15.81 -3.03 -0.05 -16.13 16 8 N -0.60 -8.83 2.24 -822.61 -1.84 -10.67 16 9 C 0.06 0.57 8.03 127.77 1.03 1.59 16 10 C 0.13 2.01 2.79 44.99 0.13 2.14 16 11 H 0.09 1.82 6.91 -2.38 -0.02 1.80 16 12 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 13 C 0.11 2.21 4.93 86.38 0.43 2.63 16 14 N -0.71 -18.21 5.39 -463.08 -2.50 -20.70 16 15 C 0.54 18.82 7.85 87.66 0.69 19.51 16 16 O -0.56 -23.31 15.86 -3.06 -0.05 -23.36 16 17 C -0.11 -4.46 6.16 71.23 0.44 -4.02 16 18 S -0.16 -8.38 18.55 -56.49 -1.05 -9.43 16 19 C -0.53 -31.31 10.04 67.95 0.68 -30.63 16 20 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 21 C 0.04 2.64 5.50 84.85 0.47 3.11 16 22 N -0.92 -56.37 13.97 21.65 0.30 -56.06 16 23 Si 0.92 45.05 27.74 68.60 1.90 46.95 16 24 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 27 C -0.09 -1.44 6.87 30.41 0.21 -1.23 16 28 H 0.12 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.10 0.63 7.74 -2.39 -0.02 0.61 16 31 H 0.10 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.08 0.97 5.94 -2.39 -0.01 0.96 16 33 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 0.40 7.51 -2.39 -0.02 0.39 16 36 H 0.08 0.72 4.46 -2.39 -0.01 0.71 16 37 H 0.08 0.74 6.53 -2.39 -0.02 0.73 16 38 H 0.08 0.58 7.67 -2.39 -0.02 0.57 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.49 6.87 -2.38 -0.02 1.48 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.41 9.81 7.86 -92.70 -0.73 9.08 16 44 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 45 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 47 H 0.08 1.58 7.95 -2.39 -0.02 1.57 16 48 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -76.84 398.56 3.83 -73.01 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.19 Total: 19.39 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.91 Total: -2.98 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -4.04 Total: -87.44 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.10 Total: -39.50 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.43 kcal Total: -76.84 3.83 -73.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718138766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.826 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds