Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47245 * 240.00608 * 2 1 3 5 5 N 1.46501 * 109.46933 * 185.00154 * 4 2 1 6 6 C 1.34781 * 119.99882 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00013 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00201 * 179.97438 * 6 5 4 9 9 H 1.09007 * 115.54709 * 34.27439 * 8 6 5 10 10 C 1.53001 * 117.49675 * 248.60726 * 8 6 5 11 11 C 1.52995 * 117.50185 * 179.97438 * 8 6 5 12 12 H 1.09003 * 117.49567 * 0.02562 * 11 8 6 13 13 C 1.53000 * 117.50012 * 214.97665 * 11 8 6 14 14 C 1.53004 * 117.49569 * 128.62260 * 13 11 8 15 15 C 1.52995 * 117.49664 * 60.00165 * 13 11 8 16 16 N 1.46499 * 109.47199 * 119.99853 * 2 1 3 17 17 C 1.46499 * 119.99660 * 60.00510 * 16 2 1 18 18 C 1.34778 * 120.00278 * 239.99980 * 16 2 1 19 19 O 1.21278 * 119.99748 * 0.02562 * 18 16 2 20 20 C 1.50697 * 120.00209 * 180.02562 * 18 16 2 21 21 S 1.80999 * 109.47181 * 180.02562 * 20 18 16 22 22 C 1.76199 * 99.99825 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00405 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99855 * 179.72221 * 22 21 20 25 25 N 1.31630 * 119.99849 * 180.27695 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 0.28024 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99557 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00077 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99899 * 26 24 22 30 30 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47377 * 299.99905 * 1 2 3 32 32 H 1.09003 * 109.47463 * 60.00021 * 1 2 3 33 33 H 1.09005 * 109.46989 * 304.99303 * 4 2 1 34 34 H 1.08998 * 109.47515 * 64.99575 * 4 2 1 35 35 H 0.96996 * 120.00177 * 359.97438 * 5 4 2 36 36 H 1.08999 * 117.49773 * 0.02562 * 10 8 6 37 37 H 1.09002 * 117.49288 * 144.99387 * 10 8 6 38 38 H 1.08991 * 115.54973 * 274.33060 * 13 11 8 39 39 H 1.08998 * 117.50208 * 0.02562 * 14 13 11 40 40 H 1.09003 * 117.49665 * 145.02284 * 14 13 11 41 41 H 1.08995 * 117.50133 * 214.97746 * 15 13 11 42 42 H 1.09001 * 117.50082 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.46984 * 269.99265 * 17 16 2 44 44 H 1.08996 * 109.47468 * 30.00102 * 17 16 2 45 45 H 1.09004 * 109.47113 * 149.99724 * 17 16 2 46 46 H 1.08999 * 109.47278 * 59.99800 * 20 18 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 20 18 16 48 48 H 0.97005 * 119.99878 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1905 6 6 4.1731 -1.4289 -2.1907 7 8 3.5699 -1.8847 -3.1391 8 6 5.6750 -1.5366 -2.1306 9 1 6.0973 -1.6698 -1.1346 10 6 6.4830 -0.7140 -3.1364 11 6 6.3807 -2.2324 -3.2963 12 1 5.7585 -2.6119 -4.1069 13 6 7.6253 -3.0621 -2.9749 14 6 7.6736 -4.4971 -3.5035 15 6 7.4605 -4.2385 -2.0107 16 7 2.0183 -0.6906 1.1962 17 6 1.6645 -2.0932 1.4279 18 6 2.7932 -0.0356 2.0834 19 8 3.0858 1.1256 1.8916 20 6 3.2960 -0.7461 3.3135 21 16 4.3008 0.3918 4.2992 22 6 4.7435 -0.6692 5.6345 23 1 4.3938 -1.6909 5.6513 24 6 5.5470 -0.1938 6.6616 25 7 5.8822 -0.9879 7.6563 26 14 6.1526 1.5731 6.6322 27 1 5.1728 2.4439 7.3300 28 1 7.4667 1.6575 7.3186 29 1 6.2997 2.0226 5.2245 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4621 -0.4319 36 1 5.9282 -0.0947 -3.8411 37 1 7.4369 -0.3061 -2.8019 38 1 8.5629 -2.5076 -2.9367 39 1 6.8189 -4.8499 -4.0806 40 1 8.6432 -4.8869 -3.8133 41 1 8.2897 -4.4582 -1.3384 42 1 6.4654 -4.4211 -1.6049 43 1 0.7377 -2.1444 1.9993 44 1 1.5296 -2.5968 0.4708 45 1 2.4630 -2.5819 1.9863 46 1 3.9017 -1.6023 3.0165 47 1 2.4484 -1.0891 3.9069 48 1 6.4435 -0.6556 8.3744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718165622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = -26.401226 kcal Electronic energy + Delta-G solvation = -27311.851455 eV Core-core repulsion = 23494.664130 eV Total energy + Delta-G solvation = -3817.187325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48490 -39.75800 -38.14859 -36.64519 -35.11575 -34.32034 -32.48617 -32.18880 -28.95399 -27.28023 -26.98562 -25.66411 -24.53662 -23.44853 -22.59314 -21.82704 -20.60008 -19.92862 -19.21075 -17.80181 -17.51755 -17.12044 -16.52739 -15.94856 -15.72843 -15.60766 -15.25016 -15.02626 -14.74341 -14.43650 -14.08829 -13.57135 -13.46285 -13.30339 -13.18263 -12.89388 -12.83400 -12.60167 -12.54093 -12.33410 -12.23008 -11.96328 -11.87496 -11.63964 -11.31137 -11.22963 -11.18189 -11.12551 -11.05361 -10.64375 -10.32557 -10.07484 -9.90702 -9.83303 -9.59879 -9.24655 -9.05101 -8.76913 -8.55408 -6.98040 -6.33414 -4.05869 2.32248 2.58864 2.78368 2.89269 3.12060 3.29171 3.40984 3.45651 3.53529 3.73102 4.28024 4.28641 4.38239 4.47926 4.53414 4.60493 4.73727 4.79901 4.82174 4.94277 4.95758 5.00682 5.03513 5.05675 5.12862 5.18901 5.26539 5.33191 5.41117 5.42027 5.42506 5.48161 5.61463 5.66953 5.69742 5.70816 5.80065 5.86751 5.90109 5.90398 5.93828 6.02541 6.22105 6.46403 7.28706 7.33329 7.89483 8.05563 8.28969 8.37023 9.12617 10.75779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.003175 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.229058 B = 8816.761739 C =10924.093999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.109 0.891 4 C 0.111 3.889 5 N -0.720 5.720 6 C 0.545 3.455 7 O -0.548 6.548 8 C -0.188 4.188 9 H 0.127 0.873 10 C -0.143 4.143 11 C -0.087 4.087 12 H 0.118 0.882 13 C -0.129 4.129 14 C -0.175 4.175 15 C -0.175 4.175 16 N -0.617 5.617 17 C 0.077 3.923 18 C 0.531 3.469 19 O -0.518 6.518 20 C -0.122 4.122 21 S -0.142 6.142 22 C -0.522 4.522 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.879 5.879 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.406 0.594 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 -3.882 -21.531 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.127 0.873 4 C -0.014 4.014 5 N -0.371 5.371 6 C 0.332 3.668 7 O -0.426 6.426 8 C -0.209 4.209 9 H 0.144 0.856 10 C -0.180 4.180 11 C -0.106 4.106 12 H 0.136 0.864 13 C -0.147 4.147 14 C -0.212 4.212 15 C -0.212 4.212 16 N -0.354 5.354 17 C -0.067 4.067 18 C 0.319 3.681 19 O -0.392 6.392 20 C -0.272 4.272 21 S 0.084 5.916 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.242 0.758 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.988 -2.519 -22.303 22.796 hybrid contribution 0.112 -0.670 1.099 1.292 sum -3.877 -3.189 -21.204 21.790 Atomic orbital electron populations 1.22043 0.93659 1.02756 1.03062 1.21306 0.94977 0.98519 0.83266 0.87266 1.21743 0.80332 1.01373 0.97917 1.45878 1.07578 1.59618 1.24064 1.19672 0.88395 0.76938 0.81784 1.90675 1.70075 1.48206 1.33609 1.22319 0.91254 1.09240 0.98127 0.85556 1.23054 1.01092 0.93812 1.00045 1.21799 0.96828 0.93503 0.98448 0.86398 1.21779 0.97642 0.89899 1.05406 1.22982 1.03112 0.97996 0.97072 1.22986 1.03384 1.02094 0.92727 1.47923 1.52013 1.12711 1.22722 1.21790 1.01478 0.81320 1.02065 1.20397 0.77236 0.86812 0.83673 1.90703 1.56514 1.16376 1.75618 1.23320 1.03830 1.03347 0.96725 1.84786 1.62886 1.19112 1.24771 1.22296 1.37449 1.00288 1.06900 0.89407 1.24712 0.94424 0.98094 0.94028 1.69937 1.35493 1.36003 1.10160 0.86742 0.79168 0.84675 0.81293 1.19217 1.19923 1.15929 0.91975 0.91400 0.91161 0.91094 0.90438 0.75837 0.88204 0.87527 0.87302 0.88686 0.88741 0.88562 0.88616 0.92369 0.91193 0.90473 0.88490 0.88492 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.19 37.16 0.34 -0.92 16 2 C 0.12 1.26 2.80 -67.93 -0.19 1.07 16 3 H 0.11 1.33 6.90 -51.93 -0.36 0.97 16 4 C 0.11 1.10 4.92 -4.04 -0.02 1.08 16 5 N -0.72 -8.05 5.39 -60.29 -0.32 -8.38 16 6 C 0.55 6.68 7.61 -10.98 -0.08 6.60 16 7 O -0.55 -8.24 16.26 5.56 0.09 -8.15 16 8 C -0.19 -1.94 5.83 -91.77 -0.54 -2.48 16 9 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 10 C -0.14 -1.27 9.96 -26.72 -0.27 -1.53 16 11 C -0.09 -0.83 5.38 -90.61 -0.49 -1.32 16 12 H 0.12 1.27 7.67 -51.93 -0.40 0.88 16 13 C -0.13 -1.09 5.87 -90.62 -0.53 -1.62 16 14 C -0.17 -1.38 10.25 -26.73 -0.27 -1.65 16 15 C -0.17 -1.51 10.18 -26.73 -0.27 -1.78 16 16 N -0.62 -7.28 2.24 -173.94 -0.39 -7.67 16 17 C 0.08 0.71 9.30 59.85 0.56 1.27 16 18 C 0.53 8.62 7.40 -10.99 -0.08 8.54 16 19 O -0.52 -10.12 15.19 5.56 0.08 -10.03 16 20 C -0.12 -2.22 4.71 36.00 0.17 -2.05 16 21 S -0.14 -3.44 18.54 -107.50 -1.99 -5.44 16 22 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 23 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 24 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 25 N -0.88 -26.05 13.97 55.49 0.78 -25.28 16 26 Si 0.86 21.28 27.74 -169.99 -4.72 16.56 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.24 -5.80 6.73 56.52 0.38 -5.42 16 30 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.69 6.88 -51.93 -0.36 0.33 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 4.77 7.87 -40.82 -0.32 4.45 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.55 6.53 -51.93 -0.34 0.22 16 45 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 46 H 0.10 1.64 7.40 -51.92 -0.38 1.25 16 47 H 0.10 1.68 8.11 -51.91 -0.42 1.26 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -33.52 408.73 -9.74 -43.25 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.96 Total: 5.40 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.46 Total: -6.42 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.06 Total: -41.33 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.72 Total: 16.56 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.52 -9.74 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718165622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.853 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds