Wall clock time and date at job start Sat Apr 11 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47245 * 240.00608 * 2 1 3 5 5 N 1.46501 * 109.46933 * 185.00154 * 4 2 1 6 6 C 1.34781 * 119.99882 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00013 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00201 * 179.97438 * 6 5 4 9 9 H 1.09007 * 115.54709 * 34.27439 * 8 6 5 10 10 C 1.53001 * 117.49675 * 248.60726 * 8 6 5 11 11 C 1.52995 * 117.50185 * 179.97438 * 8 6 5 12 12 H 1.09003 * 117.49567 * 0.02562 * 11 8 6 13 13 C 1.53000 * 117.50012 * 214.97665 * 11 8 6 14 14 C 1.53004 * 117.49569 * 128.62260 * 13 11 8 15 15 C 1.52995 * 117.49664 * 60.00165 * 13 11 8 16 16 N 1.46499 * 109.47199 * 119.99853 * 2 1 3 17 17 C 1.46499 * 119.99660 * 60.00510 * 16 2 1 18 18 C 1.34778 * 120.00278 * 239.99980 * 16 2 1 19 19 O 1.21278 * 119.99748 * 0.02562 * 18 16 2 20 20 C 1.50697 * 120.00209 * 180.02562 * 18 16 2 21 21 S 1.80999 * 109.47181 * 180.02562 * 20 18 16 22 22 C 1.76199 * 99.99825 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00405 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99855 * 179.72221 * 22 21 20 25 25 N 1.31630 * 119.99849 * 180.27695 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 0.28024 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99557 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00077 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99899 * 26 24 22 30 30 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47377 * 299.99905 * 1 2 3 32 32 H 1.09003 * 109.47463 * 60.00021 * 1 2 3 33 33 H 1.09005 * 109.46989 * 304.99303 * 4 2 1 34 34 H 1.08998 * 109.47515 * 64.99575 * 4 2 1 35 35 H 0.96996 * 120.00177 * 359.97438 * 5 4 2 36 36 H 1.08999 * 117.49773 * 0.02562 * 10 8 6 37 37 H 1.09002 * 117.49288 * 144.99387 * 10 8 6 38 38 H 1.08991 * 115.54973 * 274.33060 * 13 11 8 39 39 H 1.08998 * 117.50208 * 0.02562 * 14 13 11 40 40 H 1.09003 * 117.49665 * 145.02284 * 14 13 11 41 41 H 1.08995 * 117.50133 * 214.97746 * 15 13 11 42 42 H 1.09001 * 117.50082 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.46984 * 269.99265 * 17 16 2 44 44 H 1.08996 * 109.47468 * 30.00102 * 17 16 2 45 45 H 1.09004 * 109.47113 * 149.99724 * 17 16 2 46 46 H 1.08999 * 109.47278 * 59.99800 * 20 18 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 20 18 16 48 48 H 0.97005 * 119.99878 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1905 6 6 4.1731 -1.4289 -2.1907 7 8 3.5699 -1.8847 -3.1391 8 6 5.6750 -1.5366 -2.1306 9 1 6.0973 -1.6698 -1.1346 10 6 6.4830 -0.7140 -3.1364 11 6 6.3807 -2.2324 -3.2963 12 1 5.7585 -2.6119 -4.1069 13 6 7.6253 -3.0621 -2.9749 14 6 7.6736 -4.4971 -3.5035 15 6 7.4605 -4.2385 -2.0107 16 7 2.0183 -0.6906 1.1962 17 6 1.6645 -2.0932 1.4279 18 6 2.7932 -0.0356 2.0834 19 8 3.0858 1.1256 1.8916 20 6 3.2960 -0.7461 3.3135 21 16 4.3008 0.3918 4.2992 22 6 4.7435 -0.6692 5.6345 23 1 4.3938 -1.6909 5.6513 24 6 5.5470 -0.1938 6.6616 25 7 5.8822 -0.9879 7.6563 26 14 6.1526 1.5731 6.6322 27 1 5.1728 2.4439 7.3300 28 1 7.4667 1.6575 7.3186 29 1 6.2997 2.0226 5.2245 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4621 -0.4319 36 1 5.9282 -0.0947 -3.8411 37 1 7.4369 -0.3061 -2.8019 38 1 8.5629 -2.5076 -2.9367 39 1 6.8189 -4.8499 -4.0806 40 1 8.6432 -4.8869 -3.8133 41 1 8.2897 -4.4582 -1.3384 42 1 6.4654 -4.4211 -1.6049 43 1 0.7377 -2.1444 1.9993 44 1 1.5296 -2.5968 0.4708 45 1 2.4630 -2.5819 1.9863 46 1 3.9017 -1.6023 3.0165 47 1 2.4484 -1.0891 3.9069 48 1 6.4435 -0.6556 8.3744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718165622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:35 Heat of formation + Delta-G solvation = -46.491912 kcal Electronic energy + Delta-G solvation = -27312.722652 eV Core-core repulsion = 23494.664130 eV Total energy + Delta-G solvation = -3818.058523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48371 -40.81841 -38.95490 -37.71424 -35.86517 -35.33717 -34.66323 -33.16705 -30.29137 -28.07843 -27.89462 -27.83194 -25.30333 -24.19802 -23.24485 -22.85978 -21.43536 -20.78173 -20.31988 -19.61712 -18.44456 -18.33957 -17.47189 -17.12200 -16.93409 -16.72960 -16.49426 -16.28579 -15.87276 -15.56210 -15.21245 -14.94525 -14.61430 -14.58168 -14.12220 -14.03567 -13.79234 -13.53635 -13.40075 -13.37228 -13.26926 -13.09994 -13.02384 -12.85873 -12.59819 -12.53500 -12.32618 -12.00049 -11.90018 -11.85376 -11.85334 -11.16549 -11.11906 -10.94276 -10.91110 -10.58739 -10.51486 -10.17830 -9.79215 -8.98659 -8.50789 -6.21336 0.98168 1.32149 1.39922 1.46065 1.48883 1.53946 1.95510 2.11979 2.25266 2.65846 2.69295 2.87791 3.02479 3.48262 3.54391 3.68231 3.74009 3.79216 4.02198 4.03405 4.10467 4.13472 4.20018 4.21831 4.23465 4.33313 4.43984 4.49000 4.53898 4.62071 4.68177 4.74461 4.78150 4.79891 4.90240 4.94502 5.01002 5.02765 5.17282 5.21769 5.26670 5.30621 5.35425 5.52262 5.71331 6.12347 6.17840 6.37841 6.94539 7.04823 7.10653 8.61597 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.003175 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.229058 B = 8816.761739 C =10924.093999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 H 0.090 0.910 4 C 0.114 3.886 5 N -0.718 5.718 6 C 0.544 3.456 7 O -0.579 6.579 8 C -0.199 4.199 9 H 0.130 0.870 10 C -0.131 4.131 11 C -0.086 4.086 12 H 0.103 0.897 13 C -0.130 4.130 14 C -0.170 4.170 15 C -0.183 4.183 16 N -0.602 5.602 17 C 0.069 3.931 18 C 0.536 3.464 19 O -0.556 6.556 20 C -0.108 4.108 21 S -0.170 6.170 22 C -0.528 4.528 23 H 0.061 0.939 24 C 0.046 3.954 25 N -0.918 5.918 26 Si 0.913 3.087 27 H -0.264 1.264 28 H -0.261 1.261 29 H -0.234 1.234 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -3.721 -22.929 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.108 0.892 4 C -0.010 4.010 5 N -0.368 5.368 6 C 0.332 3.668 7 O -0.460 6.460 8 C -0.220 4.220 9 H 0.148 0.852 10 C -0.169 4.169 11 C -0.104 4.104 12 H 0.121 0.879 13 C -0.148 4.148 14 C -0.207 4.207 15 C -0.220 4.220 16 N -0.336 5.336 17 C -0.073 4.073 18 C 0.323 3.677 19 O -0.434 6.434 20 C -0.259 4.259 21 S 0.056 5.944 22 C -0.676 4.676 23 H 0.079 0.921 24 C -0.159 4.159 25 N -0.556 5.556 26 Si 0.735 3.265 27 H -0.189 1.189 28 H -0.185 1.185 29 H -0.158 1.158 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.364 -2.388 -23.710 24.227 hybrid contribution 0.092 -0.845 1.434 1.667 sum -4.272 -3.233 -22.276 22.911 Atomic orbital electron populations 1.22015 0.91432 1.03953 1.03499 1.21394 0.96523 0.97298 0.82399 0.89152 1.21797 0.79619 1.01803 0.97773 1.45936 1.08178 1.59020 1.23636 1.19962 0.89139 0.76342 0.81343 1.90657 1.70827 1.49706 1.34765 1.22333 0.90234 1.10713 0.98696 0.85209 1.23147 1.01357 0.93371 0.98999 1.21750 0.96945 0.94211 0.97535 0.87901 1.21825 0.97515 0.90049 1.05421 1.23052 1.03761 0.97513 0.96371 1.22993 1.03023 1.02619 0.93325 1.47872 1.50167 1.13562 1.22003 1.22037 1.02144 0.79577 1.03549 1.19980 0.77810 0.86227 0.83675 1.90695 1.58371 1.17848 1.76469 1.23293 1.03330 1.02290 0.96958 1.84670 1.64604 1.20681 1.24431 1.22458 1.37020 0.99792 1.08304 0.92071 1.25556 0.94708 1.01891 0.93780 1.70020 1.36566 1.37921 1.11061 0.85882 0.79200 0.79981 0.81401 1.18871 1.18502 1.15767 0.90375 0.92373 0.89363 0.90264 0.89872 0.76073 0.88357 0.85788 0.86082 0.89048 0.87258 0.87911 0.89781 0.90660 0.89203 0.90694 0.87060 0.87394 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.19 71.98 0.66 -1.36 16 2 C 0.13 2.37 2.80 44.99 0.13 2.49 16 3 H 0.09 2.11 6.90 -2.39 -0.02 2.09 16 4 C 0.11 2.05 4.92 86.38 0.42 2.47 16 5 N -0.72 -15.25 5.39 -463.05 -2.49 -17.75 16 6 C 0.54 12.95 7.61 87.66 0.67 13.62 16 7 O -0.58 -17.14 16.26 -3.03 -0.05 -17.19 16 8 C -0.20 -3.95 5.83 -11.54 -0.07 -4.01 16 9 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 10 C -0.13 -2.17 9.96 30.60 0.30 -1.87 16 11 C -0.09 -1.57 5.38 -10.79 -0.06 -1.63 16 12 H 0.10 2.22 7.67 -2.39 -0.02 2.20 16 13 C -0.13 -2.03 5.87 -10.79 -0.06 -2.10 16 14 C -0.17 -2.47 10.25 30.60 0.31 -2.16 16 15 C -0.18 -2.99 10.18 30.59 0.31 -2.68 16 16 N -0.60 -13.06 2.24 -822.60 -1.85 -14.90 16 17 C 0.07 1.10 9.30 127.77 1.19 2.29 16 18 C 0.54 16.79 7.40 87.66 0.65 17.44 16 19 O -0.56 -21.47 15.19 -3.02 -0.05 -21.52 16 20 C -0.11 -3.83 4.71 71.23 0.34 -3.49 16 21 S -0.17 -8.23 18.54 -56.49 -1.05 -9.28 16 22 C -0.53 -29.89 10.04 67.96 0.68 -29.20 16 23 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 24 C 0.05 2.64 5.50 84.86 0.47 3.11 16 25 N -0.92 -55.00 13.97 21.65 0.30 -54.70 16 26 Si 0.91 43.91 27.74 68.60 1.90 45.81 16 27 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 29 H -0.23 -11.11 6.73 99.48 0.67 -10.44 16 30 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.33 6.88 -2.38 -0.02 1.32 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.40 9.13 7.87 -92.71 -0.73 8.40 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.13 6.53 -2.39 -0.02 1.11 16 45 H 0.07 1.27 6.44 -2.38 -0.02 1.26 16 46 H 0.11 3.63 7.40 -2.39 -0.02 3.61 16 47 H 0.11 3.60 8.11 -2.39 -0.02 3.58 16 48 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -72.97 408.73 2.85 -70.11 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.19 Total: 26.49 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.94 Total: -7.08 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.04 Total: -87.35 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.05 Total: -9.28 kcal Total: -72.97 2.85 -70.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718165622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.622 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds