Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99920 * 2 1 4 4 O 1.21280 * 120.00076 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00145 * 0.02562 * 3 2 1 6 6 S 1.80999 * 109.47141 * 179.97438 * 5 3 2 7 7 C 1.76194 * 99.99913 * 179.97438 * 6 5 3 8 8 H 1.08004 * 120.00246 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00231 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99727 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00248 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46929 * 89.99867 * 11 9 7 13 13 H 1.48500 * 109.46938 * 210.00191 * 11 9 7 14 14 H 1.48497 * 109.47095 * 330.00226 * 11 9 7 15 15 C 1.46500 * 119.99961 * 180.02562 * 2 1 3 16 16 C 1.53780 * 113.61478 * 60.00275 * 15 2 1 17 17 C 1.53778 * 87.08089 * 220.02044 * 16 15 2 18 18 N 1.46499 * 113.61783 * 139.98334 * 17 16 15 19 19 C 1.34777 * 120.00199 * 156.52956 * 18 17 16 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.52996 * 109.47159 * 179.72352 * 21 19 18 23 23 C 1.52994 * 109.47118 * 179.97438 * 22 21 19 24 24 C 1.53000 * 117.50038 * 243.74119 * 23 22 21 25 25 C 1.53002 * 117.49675 * 175.08607 * 23 22 21 26 26 C 1.53778 * 87.17243 * 25.38653 * 17 16 15 27 27 H 1.09001 * 109.47192 * 270.00033 * 1 2 3 28 28 H 1.09005 * 109.47041 * 29.99687 * 1 2 3 29 29 H 1.08997 * 109.47358 * 149.99707 * 1 2 3 30 30 H 1.09000 * 109.46853 * 299.99385 * 5 3 2 31 31 H 1.08996 * 109.47068 * 59.99720 * 5 3 2 32 32 H 0.97004 * 120.00069 * 180.02562 * 10 9 7 33 33 H 1.08999 * 112.90372 * 191.25100 * 15 2 1 34 34 H 1.09002 * 113.61740 * 105.46951 * 16 15 2 35 35 H 1.09006 * 113.61556 * 334.56576 * 16 15 2 36 36 H 1.09004 * 113.61104 * 270.80214 * 17 16 15 37 37 H 0.97000 * 119.99484 * 336.52053 * 18 17 16 38 38 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 39 39 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 40 40 H 1.09004 * 109.47066 * 299.99797 * 22 21 19 41 41 H 1.09000 * 109.47234 * 59.99288 * 22 21 19 42 42 H 1.09002 * 115.55117 * 29.42044 * 23 22 21 43 43 H 1.09004 * 117.49716 * 0.02562 * 24 23 22 44 44 H 1.08999 * 117.49677 * 145.01587 * 24 23 22 45 45 H 1.09004 * 117.49947 * 214.98105 * 25 23 22 46 46 H 1.09004 * 117.50054 * 359.97438 * 25 23 22 47 47 H 1.09001 * 113.61335 * 89.16426 * 26 17 16 48 48 H 1.09000 * 113.61824 * 220.06028 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9282 6.5081 0.0019 10 7 3.2265 6.7247 0.0024 11 14 0.7407 7.9501 0.0025 12 1 0.4257 8.3313 1.4027 13 1 1.3622 9.1034 -0.6967 14 1 -0.5097 7.5618 -0.6981 15 6 2.1975 -1.2687 -0.0006 16 6 1.8954 -2.1539 -1.2212 17 6 1.9129 -3.3524 -0.2578 18 7 0.8717 -4.3446 -0.5364 19 6 1.0291 -5.6194 -0.1284 20 8 2.0331 -5.9453 0.4689 21 6 -0.0392 -6.6414 -0.4205 22 6 0.3874 -7.9995 0.1402 23 6 -0.6975 -9.0369 -0.1557 24 6 -1.4128 -9.6715 1.0387 25 6 -0.4078 -10.4903 0.2248 26 6 1.5385 -2.3632 0.8584 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 0.7585 2.5303 -0.8892 31 1 0.7590 2.5299 0.8908 32 1 3.5667 7.6331 0.0034 33 1 3.2624 -1.1438 0.1954 34 1 2.6998 -2.1730 -1.9566 35 1 0.9183 -1.9656 -1.6661 36 1 2.8998 -3.7981 -0.1333 37 1 0.0689 -4.0839 -1.0144 38 1 -0.9745 -6.3330 0.0467 39 1 -0.1805 -6.7214 -1.4982 40 1 1.3226 -8.3080 -0.3270 41 1 0.5288 -7.9195 1.2180 42 1 -1.2836 -8.8601 -1.0575 43 1 -1.1108 -9.3495 2.0354 44 1 -2.4695 -9.9123 0.9226 45 1 -0.8036 -11.2696 -0.4264 46 1 0.5559 -10.7074 0.6856 47 1 0.4636 -2.2321 0.9833 48 1 2.0551 -2.5509 1.7997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718833176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = -35.621339 kcal Electronic energy + Delta-G solvation = -25954.642708 eV Core-core repulsion = 22137.055568 eV Total energy + Delta-G solvation = -3817.587139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74390 -39.66042 -38.22519 -37.70435 -34.86406 -33.38470 -32.44138 -32.40148 -29.23761 -27.14253 -26.09786 -25.89090 -25.49426 -23.63569 -22.81848 -21.00907 -20.73387 -20.23189 -19.03532 -17.72790 -17.29725 -17.21633 -16.39384 -16.24047 -15.83622 -15.52897 -15.34598 -14.93428 -14.81719 -14.61762 -14.03904 -13.97688 -13.58211 -13.39589 -13.02981 -12.89574 -12.65834 -12.62503 -12.49389 -12.29798 -12.06462 -11.96796 -11.81889 -11.66476 -11.48951 -11.33275 -11.07634 -11.03960 -11.00203 -10.78276 -10.76025 -10.35499 -10.07062 -9.81777 -9.41115 -9.33005 -9.07802 -8.53786 -8.24010 -6.51567 -6.22768 -3.93542 2.29956 2.69616 2.98649 3.01046 3.21210 3.25235 3.29231 3.33597 3.58813 4.10948 4.19000 4.21478 4.31176 4.35141 4.47228 4.49891 4.61429 4.66872 4.74410 4.85004 4.92352 4.99530 5.02797 5.12377 5.19592 5.20219 5.33984 5.35439 5.43740 5.44423 5.46156 5.51536 5.55884 5.60148 5.62875 5.68189 5.69763 5.74619 5.87523 5.90192 5.97553 6.10652 6.23084 6.61951 7.14070 7.50051 7.58226 7.89125 8.33763 8.52157 9.22451 10.84665 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038761 B = 0.001513 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.209902 B =18500.048801 C =18963.672251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.534 3.466 4 O -0.515 6.515 5 C -0.150 4.150 6 S -0.062 6.062 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.129 3.871 16 C -0.158 4.158 17 C 0.125 3.875 18 N -0.720 5.720 19 C 0.512 3.488 20 O -0.539 6.539 21 C -0.138 4.138 22 C -0.074 4.074 23 C -0.155 4.155 24 C -0.182 4.182 25 C -0.181 4.181 26 C -0.161 4.161 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.268 0.732 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -30.176 -2.117 32.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.348 5.348 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.301 4.301 6 S 0.165 5.835 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.024 3.976 16 C -0.198 4.198 17 C 0.020 3.980 18 N -0.371 5.371 19 C 0.299 3.701 20 O -0.416 6.416 21 C -0.178 4.178 22 C -0.112 4.112 23 C -0.174 4.174 24 C -0.219 4.219 25 C -0.218 4.218 26 C -0.201 4.201 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.834 -30.262 -1.684 31.864 hybrid contribution -2.796 1.102 -0.255 3.016 sum -12.630 -29.160 -1.939 31.837 Atomic orbital electron populations 1.21724 0.79916 1.02955 1.01782 1.47765 1.06533 1.05177 1.75298 1.20388 0.87972 0.84573 0.74868 1.90694 1.13765 1.86774 1.47605 1.23565 1.04569 0.97230 1.04705 1.85416 1.08036 0.93339 1.96702 1.22855 0.94284 0.92216 1.59033 0.90962 1.24988 0.95658 0.98363 0.94517 1.70017 1.11750 1.21677 1.46792 0.86172 0.80256 0.80740 0.78358 1.20265 1.20735 1.19710 1.22264 0.98519 0.81542 0.95236 1.23843 1.03339 0.94488 0.98107 1.22301 0.93130 0.86562 0.96053 1.46004 1.22589 1.09185 1.59307 1.20807 0.88074 0.82963 0.78293 1.90722 1.30398 1.79884 1.40577 1.21670 0.98235 0.94553 1.03333 1.20919 0.97240 0.91161 1.01868 1.22353 1.01332 0.94242 0.99426 1.23071 0.97930 1.04654 0.96227 1.22977 1.00893 0.93980 1.03929 1.23956 1.02081 0.95091 0.98973 0.92665 0.90481 0.91544 0.89244 0.89252 0.92168 0.85834 0.90003 0.89227 0.86421 0.76517 0.88735 0.88796 0.90759 0.90981 0.87745 0.88703 0.88916 0.88848 0.88681 0.89177 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.85 59.85 0.53 1.29 16 2 N -0.61 -8.20 3.08 -172.90 -0.53 -8.74 16 3 C 0.53 9.96 7.69 -10.98 -0.08 9.88 16 4 O -0.51 -11.63 15.35 5.56 0.09 -11.55 16 5 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 6 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 11 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.13 1.49 4.20 -67.03 -0.28 1.21 16 16 C -0.16 -1.37 7.37 -25.92 -0.19 -1.56 16 17 C 0.12 1.06 4.21 -67.12 -0.28 0.78 16 18 N -0.72 -4.80 5.36 -53.02 -0.28 -5.09 16 19 C 0.51 4.30 7.83 -10.98 -0.09 4.21 16 20 O -0.54 -6.90 15.60 5.55 0.09 -6.81 16 21 C -0.14 -0.70 5.66 -27.88 -0.16 -0.86 16 22 C -0.07 -0.47 4.78 -26.74 -0.13 -0.60 16 23 C -0.16 -0.80 5.73 -90.62 -0.52 -1.32 16 24 C -0.18 -0.92 10.18 -26.70 -0.27 -1.20 16 25 C -0.18 -0.94 10.25 -26.70 -0.27 -1.22 16 26 C -0.16 -1.48 7.32 -25.83 -0.19 -1.67 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.09 1.64 7.40 -51.92 -0.38 1.25 16 31 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.12 1.69 7.24 -51.93 -0.38 1.31 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.65 6.89 -51.93 -0.36 0.29 16 36 H 0.12 1.20 7.50 -51.93 -0.39 0.81 16 37 H 0.40 1.54 8.71 -40.82 -0.36 1.19 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.07 0.55 7.83 -51.93 -0.41 0.15 16 42 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.72 6.74 -51.93 -0.35 0.37 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -36.23 406.50 -10.48 -46.70 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.89 Total: -0.92 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.57 Total: -6.73 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.08 Total: -39.15 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.23 -10.48 -46.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718833176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.084 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds