Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99920 * 2 1 4 4 O 1.21280 * 120.00076 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00145 * 0.02562 * 3 2 1 6 6 S 1.80999 * 109.47141 * 179.97438 * 5 3 2 7 7 C 1.76194 * 99.99913 * 179.97438 * 6 5 3 8 8 H 1.08004 * 120.00246 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00231 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99727 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00248 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46929 * 89.99867 * 11 9 7 13 13 H 1.48500 * 109.46938 * 210.00191 * 11 9 7 14 14 H 1.48497 * 109.47095 * 330.00226 * 11 9 7 15 15 C 1.46500 * 119.99961 * 180.02562 * 2 1 3 16 16 C 1.53780 * 113.61478 * 60.00275 * 15 2 1 17 17 C 1.53778 * 87.08089 * 220.02044 * 16 15 2 18 18 N 1.46499 * 113.61783 * 139.98334 * 17 16 15 19 19 C 1.34777 * 120.00199 * 156.52956 * 18 17 16 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.52996 * 109.47159 * 179.72352 * 21 19 18 23 23 C 1.52994 * 109.47118 * 179.97438 * 22 21 19 24 24 C 1.53000 * 117.50038 * 243.74119 * 23 22 21 25 25 C 1.53002 * 117.49675 * 175.08607 * 23 22 21 26 26 C 1.53778 * 87.17243 * 25.38653 * 17 16 15 27 27 H 1.09001 * 109.47192 * 270.00033 * 1 2 3 28 28 H 1.09005 * 109.47041 * 29.99687 * 1 2 3 29 29 H 1.08997 * 109.47358 * 149.99707 * 1 2 3 30 30 H 1.09000 * 109.46853 * 299.99385 * 5 3 2 31 31 H 1.08996 * 109.47068 * 59.99720 * 5 3 2 32 32 H 0.97004 * 120.00069 * 180.02562 * 10 9 7 33 33 H 1.08999 * 112.90372 * 191.25100 * 15 2 1 34 34 H 1.09002 * 113.61740 * 105.46951 * 16 15 2 35 35 H 1.09006 * 113.61556 * 334.56576 * 16 15 2 36 36 H 1.09004 * 113.61104 * 270.80214 * 17 16 15 37 37 H 0.97000 * 119.99484 * 336.52053 * 18 17 16 38 38 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 39 39 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 40 40 H 1.09004 * 109.47066 * 299.99797 * 22 21 19 41 41 H 1.09000 * 109.47234 * 59.99288 * 22 21 19 42 42 H 1.09002 * 115.55117 * 29.42044 * 23 22 21 43 43 H 1.09004 * 117.49716 * 0.02562 * 24 23 22 44 44 H 1.08999 * 117.49677 * 145.01587 * 24 23 22 45 45 H 1.09004 * 117.49947 * 214.98105 * 25 23 22 46 46 H 1.09004 * 117.50054 * 359.97438 * 25 23 22 47 47 H 1.09001 * 113.61335 * 89.16426 * 26 17 16 48 48 H 1.09000 * 113.61824 * 220.06028 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9282 6.5081 0.0019 10 7 3.2265 6.7247 0.0024 11 14 0.7407 7.9501 0.0025 12 1 0.4257 8.3313 1.4027 13 1 1.3622 9.1034 -0.6967 14 1 -0.5097 7.5618 -0.6981 15 6 2.1975 -1.2687 -0.0006 16 6 1.8954 -2.1539 -1.2212 17 6 1.9129 -3.3524 -0.2578 18 7 0.8717 -4.3446 -0.5364 19 6 1.0291 -5.6194 -0.1284 20 8 2.0331 -5.9453 0.4689 21 6 -0.0392 -6.6414 -0.4205 22 6 0.3874 -7.9995 0.1402 23 6 -0.6975 -9.0369 -0.1557 24 6 -1.4128 -9.6715 1.0387 25 6 -0.4078 -10.4903 0.2248 26 6 1.5385 -2.3632 0.8584 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 0.7585 2.5303 -0.8892 31 1 0.7590 2.5299 0.8908 32 1 3.5667 7.6331 0.0034 33 1 3.2624 -1.1438 0.1954 34 1 2.6998 -2.1730 -1.9566 35 1 0.9183 -1.9656 -1.6661 36 1 2.8998 -3.7981 -0.1333 37 1 0.0689 -4.0839 -1.0144 38 1 -0.9745 -6.3330 0.0467 39 1 -0.1805 -6.7214 -1.4982 40 1 1.3226 -8.3080 -0.3270 41 1 0.5288 -7.9195 1.2180 42 1 -1.2836 -8.8601 -1.0575 43 1 -1.1108 -9.3495 2.0354 44 1 -2.4695 -9.9123 0.9226 45 1 -0.8036 -11.2696 -0.4264 46 1 0.5559 -10.7074 0.6856 47 1 0.4636 -2.2321 0.9833 48 1 2.0551 -2.5509 1.7997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718833176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = -59.605239 kcal Electronic energy + Delta-G solvation = -25955.682728 eV Core-core repulsion = 22137.055568 eV Total energy + Delta-G solvation = -3818.627159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62968 -40.61555 -39.18936 -38.27475 -35.94370 -34.58063 -34.18123 -32.92728 -30.72708 -28.02886 -27.68671 -26.81624 -26.54499 -24.48458 -23.20137 -21.61742 -21.33982 -21.15487 -20.09680 -19.58196 -18.38997 -17.91466 -17.47965 -16.89037 -16.87672 -16.70781 -16.54640 -16.14759 -15.93613 -15.71737 -15.11302 -14.73332 -14.53062 -14.47513 -14.36983 -14.06223 -13.72969 -13.40073 -13.29138 -13.18875 -13.10941 -13.04605 -12.88897 -12.65811 -12.45651 -12.36500 -12.19841 -12.12684 -12.10117 -11.86190 -11.68903 -11.20518 -11.13768 -10.89294 -10.80505 -10.69869 -10.25782 -10.04583 -9.62937 -8.67309 -8.34050 -6.12655 1.26057 1.43162 1.46503 1.55304 1.56928 1.67345 2.01319 2.27669 2.35311 2.93758 3.00299 3.25336 3.37870 3.56770 3.71165 3.75231 3.84126 3.84462 3.92198 4.06515 4.10960 4.21196 4.31214 4.35535 4.43733 4.47513 4.58222 4.63296 4.64653 4.66658 4.70834 4.81929 4.82291 4.82659 4.95770 4.99198 5.07977 5.08807 5.14759 5.17619 5.29377 5.42090 5.46378 5.54201 5.62737 6.20106 6.28859 6.61362 7.07138 7.14667 7.32012 8.75252 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038761 B = 0.001513 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.209902 B =18500.048801 C =18963.672251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.597 5.597 3 C 0.529 3.471 4 O -0.569 6.569 5 C -0.122 4.122 6 S -0.158 6.158 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.256 1.256 15 C 0.111 3.889 16 C -0.140 4.140 17 C 0.132 3.868 18 N -0.704 5.704 19 C 0.507 3.493 20 O -0.592 6.592 21 C -0.128 4.128 22 C -0.073 4.073 23 C -0.151 4.151 24 C -0.183 4.183 25 C -0.191 4.191 26 C -0.147 4.147 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.271 0.729 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.420 0.580 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.016 -31.109 -3.151 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C 0.317 3.683 4 O -0.447 6.447 5 C -0.273 4.273 6 S 0.070 5.930 7 C -0.692 4.692 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.007 3.993 16 C -0.179 4.179 17 C 0.026 3.974 18 N -0.356 5.356 19 C 0.296 3.704 20 O -0.472 6.472 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.169 4.169 24 C -0.220 4.220 25 C -0.228 4.228 26 C -0.187 4.187 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.258 0.742 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.133 0.867 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.418 -31.236 -2.738 34.512 hybrid contribution -1.408 1.226 0.092 1.870 sum -15.826 -30.010 -2.646 34.030 Atomic orbital electron populations 1.22120 0.76862 1.05092 1.03444 1.47744 1.08316 1.03976 1.72897 1.20227 0.87301 0.85648 0.75121 1.90677 1.15906 1.87533 1.50605 1.23379 1.02638 0.94817 1.06474 1.85639 1.12860 0.97495 1.97039 1.23195 0.94625 0.92566 1.58861 0.89780 1.26136 0.97562 1.01712 0.93707 1.70191 1.14196 1.22451 1.48038 0.84948 0.77935 0.76287 0.78777 1.19373 1.20388 1.17973 1.22399 0.97193 0.81338 0.98380 1.23751 1.04568 0.92789 0.96757 1.21977 0.92886 0.86792 0.95789 1.45829 1.22662 1.08297 1.58792 1.21460 0.88015 0.83711 0.77223 1.90713 1.32704 1.80748 1.43013 1.21681 0.97607 0.92301 1.05113 1.20851 0.97098 0.92672 1.00531 1.22362 1.00919 0.93517 1.00077 1.23119 0.98483 1.04433 0.95924 1.23044 1.00736 0.94577 1.04399 1.23904 1.03019 0.93571 0.98156 0.91208 0.90335 0.87550 0.87089 0.87492 0.92030 0.89109 0.90614 0.86389 0.88706 0.74226 0.86240 0.86083 0.92629 0.92989 0.85915 0.89379 0.87725 0.87865 0.89633 0.86731 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.85 127.77 1.13 2.11 16 2 N -0.60 -14.93 3.08 -819.32 -2.53 -17.46 16 3 C 0.53 19.78 7.69 87.66 0.67 20.45 16 4 O -0.57 -26.94 15.35 -3.03 -0.05 -26.98 16 5 C -0.12 -4.80 4.71 71.24 0.34 -4.47 16 6 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 7 C -0.54 -30.89 9.50 67.96 0.65 -30.25 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 C 0.01 0.76 5.49 84.86 0.47 1.23 16 10 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 11 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 14 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 15 C 0.11 2.48 4.20 45.57 0.19 2.67 16 16 C -0.14 -2.09 7.37 31.12 0.23 -1.87 16 17 C 0.13 2.04 4.21 45.52 0.19 2.23 16 18 N -0.70 -7.26 5.36 -440.04 -2.36 -9.62 16 19 C 0.51 7.61 7.83 87.66 0.69 8.29 16 20 O -0.59 -15.25 15.60 -3.04 -0.05 -15.30 16 21 C -0.13 -0.91 5.66 29.85 0.17 -0.74 16 22 C -0.07 -0.86 4.78 30.59 0.15 -0.72 16 23 C -0.15 -1.25 5.73 -10.79 -0.06 -1.32 16 24 C -0.18 -1.58 10.18 30.62 0.31 -1.27 16 25 C -0.19 -1.80 10.25 30.62 0.31 -1.49 16 26 C -0.15 -2.42 7.32 31.18 0.23 -2.19 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.20 6.44 -2.38 -0.02 1.19 16 29 H 0.11 0.77 6.34 -2.39 -0.02 0.75 16 30 H 0.11 3.87 7.40 -2.39 -0.02 3.85 16 31 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.09 2.65 7.24 -2.39 -0.02 2.63 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.13 6.89 -2.38 -0.02 1.11 16 36 H 0.09 1.98 7.50 -2.39 -0.02 1.96 16 37 H 0.42 1.19 8.71 -92.71 -0.81 0.38 16 38 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.05 0.85 8.10 -2.38 -0.02 0.83 16 41 H 0.05 0.81 7.83 -2.39 -0.02 0.79 16 42 H 0.12 0.60 8.08 -2.39 -0.02 0.58 16 43 H 0.09 0.87 8.03 -2.38 -0.02 0.85 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 46 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.11 1.34 6.74 -2.39 -0.02 1.33 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -84.98 406.50 1.98 -83.00 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.15 Total: 14.29 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.66 Total: -7.32 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.60 Total: -82.93 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.09 Total: -42.28 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -84.98 1.98 -83.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718833176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.391 kcal (2) G-P(sol) polarization free energy of solvation -84.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds