Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99961 * 2 1 4 4 C 1.52994 * 109.46965 * 125.00301 * 3 2 1 5 5 C 1.52998 * 109.47305 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47565 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46499 * 113.61622 * 270.88175 * 12 11 10 14 14 C 1.34771 * 119.99903 * 205.00326 * 13 12 11 15 15 O 1.21282 * 120.00369 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99769 * 180.02562 * 14 13 12 17 17 S 1.81007 * 109.47136 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99893 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47138 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.46739 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47348 * 299.99946 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 27 27 H 1.08004 * 119.99884 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99956 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00045 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47423 * 5.00156 * 3 2 1 31 31 H 1.09005 * 109.46846 * 245.00387 * 3 2 1 32 32 H 1.09005 * 109.47448 * 60.00059 * 4 3 2 33 33 H 1.08999 * 109.47271 * 300.00181 * 4 3 2 34 34 H 1.08999 * 109.47305 * 59.99719 * 5 4 3 35 35 H 1.08999 * 109.47052 * 300.00252 * 5 4 3 36 36 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 37 37 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 38 38 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 39 39 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 40 40 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 41 41 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 42 42 H 1.08997 * 113.61028 * 139.98291 * 12 11 10 43 43 H 0.97001 * 119.99349 * 25.00515 * 13 12 11 44 44 H 1.08997 * 109.47565 * 299.99791 * 16 14 13 45 45 H 1.09002 * 109.47005 * 60.00146 * 16 14 13 46 46 H 0.97003 * 119.99930 * 179.97438 * 21 20 18 47 47 H 1.09006 * 113.61307 * 25.43652 * 26 10 8 48 48 H 1.09007 * 113.61642 * 254.53409 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 6 3.7996 2.6583 1.1820 6 6 4.7561 2.6861 2.3461 7 8 4.8197 1.7393 3.1015 8 7 5.5409 3.7630 2.5480 9 6 5.4637 4.9069 1.6359 10 6 6.4704 3.7903 3.6800 11 6 6.2107 4.9444 4.6627 12 6 7.7375 5.1011 4.7594 13 7 8.3467 4.2785 5.8075 14 6 9.5224 4.6458 6.3542 15 8 10.0765 5.6571 5.9784 16 6 10.1494 3.7993 7.4319 17 16 11.7100 4.5504 7.9578 18 6 12.2108 3.3885 9.1841 19 1 11.5925 2.5293 9.3985 20 6 13.4005 3.5769 9.8738 21 7 14.1543 4.6238 9.6122 22 14 13.9311 2.3455 11.1744 23 1 14.0847 1.0052 10.5537 24 1 15.2275 2.7718 11.7600 25 1 12.9028 2.2809 12.2438 26 6 7.8121 4.4697 3.3592 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6212 1.4026 -0.9315 32 1 3.7400 0.5065 1.0920 33 1 2.4773 1.2355 2.1130 34 1 3.0944 3.4846 1.2718 35 1 4.3573 2.7563 0.2506 36 1 6.1737 4.7698 0.8203 37 1 4.4546 4.9810 1.2306 38 1 5.7055 5.8210 2.1782 39 1 6.5772 2.8198 4.1647 40 1 5.7444 4.6271 5.5954 41 1 5.7118 5.8005 4.2086 42 1 8.0688 6.1391 4.7885 43 1 7.9037 3.4695 6.1077 44 1 9.4719 3.7345 8.2833 45 1 10.3408 2.7992 7.0430 46 1 14.9855 4.7556 10.0945 47 1 7.7509 5.1961 2.5488 48 1 8.6387 3.7692 3.2396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718847856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = -42.561487 kcal Electronic energy + Delta-G solvation = -25939.749940 eV Core-core repulsion = 22121.861853 eV Total energy + Delta-G solvation = -3817.888087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90174 -39.53466 -38.05625 -36.38355 -35.16018 -33.03054 -32.44268 -32.40152 -29.16578 -27.85888 -27.52209 -26.00602 -25.50101 -24.50809 -22.36209 -20.81658 -20.37259 -19.85136 -19.00696 -17.91414 -17.47263 -16.86894 -16.56562 -16.09449 -16.02607 -15.67320 -14.96106 -14.79946 -14.79271 -14.38921 -14.24383 -13.88693 -13.64478 -13.54226 -13.14174 -12.97648 -12.87154 -12.79640 -12.69725 -12.62019 -12.14019 -12.07704 -11.98182 -11.86055 -11.33534 -11.16223 -11.05082 -11.03994 -11.02045 -10.76449 -10.68509 -10.06681 -9.81862 -9.76037 -9.43836 -9.05918 -8.99419 -8.91077 -8.24311 -6.49751 -6.21016 -3.91689 1.84254 2.28661 2.61473 2.99305 3.03467 3.24589 3.28088 3.31313 3.67706 4.04615 4.21245 4.26192 4.28909 4.33656 4.47589 4.62198 4.65836 4.71778 4.76463 4.80438 4.95471 5.04787 5.10582 5.11467 5.13841 5.14245 5.24905 5.31848 5.33933 5.38483 5.47970 5.55843 5.60911 5.68633 5.69740 5.77449 5.88889 5.89261 5.93458 6.14705 6.18311 6.20573 6.32658 6.64302 7.02268 7.60109 7.67256 7.84063 8.35786 8.57907 9.24342 10.86380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.001607 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.867819 B =17418.019849 C =18471.821612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.511 3.489 7 O -0.538 6.538 8 N -0.607 5.607 9 C 0.073 3.927 10 C 0.120 3.880 11 C -0.158 4.158 12 C 0.130 3.870 13 N -0.723 5.723 14 C 0.536 3.464 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.162 4.162 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.400 0.600 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.094 0.906 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.345 -2.521 -21.264 33.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.179 4.179 6 C 0.300 3.700 7 O -0.415 6.415 8 N -0.340 5.340 9 C -0.070 4.070 10 C 0.017 3.983 11 C -0.198 4.198 12 C 0.023 3.977 13 N -0.376 5.376 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.202 4.202 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.234 0.766 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.203 -1.223 -21.443 33.113 hybrid contribution -0.513 -2.275 1.309 2.674 sum -25.716 -3.497 -20.133 32.847 Atomic orbital electron populations 1.23860 0.95983 1.01842 1.01680 1.22961 0.96043 0.98601 0.99406 1.20795 0.98162 0.95543 0.98726 1.21305 0.97759 0.96203 0.98657 1.21741 0.98159 1.00612 0.97408 1.20806 0.80928 0.81826 0.86431 1.90714 1.68081 1.35169 1.47546 1.47887 1.39837 1.17499 1.28771 1.21817 1.02374 0.89200 0.93564 1.22759 0.88789 0.99866 0.86933 1.23827 0.96321 0.99319 1.00286 1.21524 0.92367 0.96831 0.87013 1.45743 1.23530 1.28267 1.40076 1.20338 0.79818 0.85645 0.81970 1.90697 1.61257 1.25500 1.61473 1.23544 1.05152 1.02732 0.99073 1.85370 1.15373 1.34301 1.48221 1.22838 1.09900 1.11608 1.24147 0.90950 1.24983 0.95356 0.96046 0.97115 1.70007 1.12931 1.26928 1.40460 0.86226 0.77917 0.80631 0.80734 1.19932 1.20804 1.19933 1.23924 0.97208 1.00701 0.98347 0.88649 0.88553 0.87324 0.91479 0.90900 0.90970 0.91034 0.88888 0.88840 0.92221 0.90831 0.90511 0.86268 0.90237 0.88585 0.87329 0.76604 0.89111 0.89120 0.92133 0.88762 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 14.32 29.02 0.42 -0.65 16 2 C -0.15 -0.88 9.52 -36.02 -0.34 -1.22 16 3 C -0.10 -0.47 5.66 -27.88 -0.16 -0.63 16 4 C -0.10 -0.66 4.49 -26.74 -0.12 -0.78 16 5 C -0.14 -0.77 4.25 -27.89 -0.12 -0.89 16 6 C 0.51 4.75 7.67 -10.99 -0.08 4.67 16 7 O -0.54 -7.26 15.47 5.55 0.09 -7.17 16 8 N -0.61 -4.73 3.08 -173.00 -0.53 -5.26 16 9 C 0.07 0.31 8.85 59.85 0.53 0.84 16 10 C 0.12 1.09 4.08 -67.12 -0.27 0.82 16 11 C -0.16 -1.33 7.36 -25.91 -0.19 -1.52 16 12 C 0.13 1.43 4.32 -67.12 -0.29 1.14 16 13 N -0.72 -9.53 5.26 -53.02 -0.28 -9.81 16 14 C 0.54 9.86 7.85 -10.99 -0.09 9.78 16 15 O -0.52 -11.47 15.46 5.56 0.09 -11.38 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 C -0.16 -1.53 7.31 -25.92 -0.19 -1.72 16 27 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 28 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.09 0.34 7.40 -51.93 -0.38 -0.04 16 35 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 36 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.18 6.44 -51.93 -0.33 -0.16 16 38 H 0.08 0.29 6.33 -51.93 -0.33 -0.04 16 39 H 0.12 1.31 7.24 -51.93 -0.38 0.93 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.65 6.92 -51.93 -0.36 0.29 16 42 H 0.11 1.37 7.47 -51.93 -0.39 0.98 16 43 H 0.40 4.34 8.70 -40.82 -0.36 3.98 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.09 0.73 6.72 -51.93 -0.35 0.38 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 409.01 15.07 6.16 6.16 Total: -1.00 -36.42 409.01 -9.35 -45.77 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.88 Total: 0.61 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.49 Total: -6.11 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.08 Total: -40.56 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.42 -9.35 -45.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718847856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.205 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds