Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99961 * 2 1 4 4 C 1.52994 * 109.46965 * 125.00301 * 3 2 1 5 5 C 1.52998 * 109.47305 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47565 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46499 * 113.61622 * 270.88175 * 12 11 10 14 14 C 1.34771 * 119.99903 * 205.00326 * 13 12 11 15 15 O 1.21282 * 120.00369 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99769 * 180.02562 * 14 13 12 17 17 S 1.81007 * 109.47136 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99893 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47138 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.46739 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47348 * 299.99946 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 27 27 H 1.08004 * 119.99884 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99956 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00045 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47423 * 5.00156 * 3 2 1 31 31 H 1.09005 * 109.46846 * 245.00387 * 3 2 1 32 32 H 1.09005 * 109.47448 * 60.00059 * 4 3 2 33 33 H 1.08999 * 109.47271 * 300.00181 * 4 3 2 34 34 H 1.08999 * 109.47305 * 59.99719 * 5 4 3 35 35 H 1.08999 * 109.47052 * 300.00252 * 5 4 3 36 36 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 37 37 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 38 38 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 39 39 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 40 40 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 41 41 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 42 42 H 1.08997 * 113.61028 * 139.98291 * 12 11 10 43 43 H 0.97001 * 119.99349 * 25.00515 * 13 12 11 44 44 H 1.08997 * 109.47565 * 299.99791 * 16 14 13 45 45 H 1.09002 * 109.47005 * 60.00146 * 16 14 13 46 46 H 0.97003 * 119.99930 * 179.97438 * 21 20 18 47 47 H 1.09006 * 113.61307 * 25.43652 * 26 10 8 48 48 H 1.09007 * 113.61642 * 254.53409 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 6 3.7996 2.6583 1.1820 6 6 4.7561 2.6861 2.3461 7 8 4.8197 1.7393 3.1015 8 7 5.5409 3.7630 2.5480 9 6 5.4637 4.9069 1.6359 10 6 6.4704 3.7903 3.6800 11 6 6.2107 4.9444 4.6627 12 6 7.7375 5.1011 4.7594 13 7 8.3467 4.2785 5.8075 14 6 9.5224 4.6458 6.3542 15 8 10.0765 5.6571 5.9784 16 6 10.1494 3.7993 7.4319 17 16 11.7100 4.5504 7.9578 18 6 12.2108 3.3885 9.1841 19 1 11.5925 2.5293 9.3985 20 6 13.4005 3.5769 9.8738 21 7 14.1543 4.6238 9.6122 22 14 13.9311 2.3455 11.1744 23 1 14.0847 1.0052 10.5537 24 1 15.2275 2.7718 11.7600 25 1 12.9028 2.2809 12.2438 26 6 7.8121 4.4697 3.3592 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6212 1.4026 -0.9315 32 1 3.7400 0.5065 1.0920 33 1 2.4773 1.2355 2.1130 34 1 3.0944 3.4846 1.2718 35 1 4.3573 2.7563 0.2506 36 1 6.1737 4.7698 0.8203 37 1 4.4546 4.9810 1.2306 38 1 5.7055 5.8210 2.1782 39 1 6.5772 2.8198 4.1647 40 1 5.7444 4.6271 5.5954 41 1 5.7118 5.8005 4.2086 42 1 8.0688 6.1391 4.7885 43 1 7.9037 3.4695 6.1077 44 1 9.4719 3.7345 8.2833 45 1 10.3408 2.7992 7.0430 46 1 14.9855 4.7556 10.0945 47 1 7.7509 5.1961 2.5488 48 1 8.6387 3.7692 3.2396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718847856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = -66.658601 kcal Electronic energy + Delta-G solvation = -25940.794869 eV Core-core repulsion = 22121.861853 eV Total energy + Delta-G solvation = -3818.933016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71695 -40.59822 -39.15349 -36.84806 -35.96421 -34.59603 -34.02622 -33.09968 -30.66124 -28.40172 -27.97940 -27.66889 -26.75814 -25.29347 -22.95107 -22.12265 -20.88666 -20.52766 -19.83722 -19.75788 -18.33084 -17.82495 -17.23967 -17.13867 -17.04890 -16.88423 -16.45666 -16.12683 -15.95674 -15.33531 -15.12790 -14.83132 -14.64370 -14.37928 -14.23954 -14.07914 -13.84423 -13.57319 -13.30601 -13.21516 -13.17818 -13.16967 -12.92704 -12.87641 -12.59983 -12.50760 -12.44983 -11.90650 -11.75654 -11.74031 -11.61947 -11.50258 -11.13861 -10.98894 -10.77345 -10.30193 -10.18214 -10.11839 -9.60730 -8.67468 -8.35460 -6.13544 1.25313 1.42390 1.43120 1.45289 1.55433 1.55620 1.63121 2.03762 2.22054 2.27390 2.98637 3.30142 3.35130 3.56397 3.64360 3.83431 3.86246 3.93214 4.01122 4.06043 4.28082 4.29611 4.32530 4.38681 4.48893 4.54567 4.61525 4.64795 4.68442 4.74397 4.77841 4.81623 4.83275 4.94188 4.97766 4.99854 5.07472 5.08748 5.23963 5.40561 5.40781 5.48824 5.62830 5.79531 5.91620 6.18723 6.41671 6.45492 7.05834 7.19118 7.20035 8.73531 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.001607 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.867819 B =17418.019849 C =18471.821612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.130 4.130 6 C 0.502 3.498 7 O -0.592 6.592 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.120 3.880 11 C -0.138 4.138 12 C 0.115 3.885 13 N -0.700 5.700 14 C 0.539 3.461 15 O -0.560 6.560 16 C -0.133 4.133 17 S -0.145 6.145 18 C -0.551 4.551 19 H 0.081 0.919 20 C 0.016 3.984 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.151 4.151 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.413 0.587 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.272 0.728 47 H 0.118 0.882 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.523 -2.680 -22.388 36.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.186 4.186 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.170 4.170 6 C 0.292 3.708 7 O -0.473 6.473 8 N -0.335 5.335 9 C -0.078 4.078 10 C 0.016 3.984 11 C -0.177 4.177 12 C 0.009 3.991 13 N -0.353 5.353 14 C 0.325 3.675 15 O -0.438 6.438 16 C -0.284 4.284 17 S 0.082 5.918 18 C -0.698 4.698 19 H 0.099 0.901 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.819 3.181 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.191 4.191 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.250 0.750 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.136 0.864 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.436 -1.378 -22.609 35.578 hybrid contribution 0.049 -2.227 1.559 2.719 sum -27.387 -3.604 -21.050 34.729 Atomic orbital electron populations 1.24015 0.95979 1.02500 1.01090 1.23109 0.96428 0.99072 0.99989 1.20757 0.97961 0.95410 0.98355 1.21226 0.97562 0.96374 0.98447 1.21770 0.97861 1.00725 0.96598 1.21532 0.81187 0.81250 0.86784 1.90693 1.69790 1.37182 1.49601 1.47976 1.38753 1.18215 1.28598 1.22143 1.04446 0.87968 0.93281 1.22535 0.89083 0.98985 0.87794 1.23753 0.93950 0.99754 1.00205 1.21749 0.94325 0.95830 0.87182 1.45513 1.21675 1.28593 1.39559 1.20005 0.80922 0.84812 0.81713 1.90683 1.62844 1.27283 1.62944 1.23395 1.01534 1.02984 1.00479 1.85499 1.20637 1.36611 1.49062 1.23186 1.10501 1.11798 1.24345 0.90069 1.26096 0.95226 0.98095 0.99485 1.70167 1.13484 1.29097 1.41892 0.85025 0.77687 0.77872 0.77545 1.18790 1.20213 1.18712 1.23882 0.96763 1.00591 0.97850 0.87725 0.88279 0.87888 0.90155 0.89617 0.93060 0.93166 0.86098 0.86424 0.91233 0.88225 0.89555 0.88565 0.90276 0.86022 0.88634 0.75019 0.87259 0.87477 0.91932 0.86421 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 14.32 67.78 0.97 -0.97 16 2 C -0.17 -1.81 9.52 25.65 0.24 -1.57 16 3 C -0.09 -0.70 5.66 29.85 0.17 -0.53 16 4 C -0.10 -1.20 4.49 30.59 0.14 -1.06 16 5 C -0.13 -1.09 4.25 29.85 0.13 -0.97 16 6 C 0.50 8.62 7.67 87.66 0.67 9.29 16 7 O -0.59 -16.18 15.47 -3.05 -0.05 -16.23 16 8 N -0.60 -8.00 3.08 -819.64 -2.53 -10.52 16 9 C 0.06 0.29 8.85 127.77 1.13 1.42 16 10 C 0.12 2.02 4.08 45.52 0.19 2.21 16 11 C -0.14 -2.00 7.36 31.12 0.23 -1.77 16 12 C 0.12 2.41 4.32 45.52 0.20 2.61 16 13 N -0.70 -17.98 5.26 -440.04 -2.32 -20.30 16 14 C 0.54 19.92 7.85 87.66 0.69 20.61 16 15 O -0.56 -25.53 15.46 -3.04 -0.05 -25.58 16 16 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 17 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 18 C -0.55 -31.81 9.50 67.96 0.65 -31.17 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.02 0.92 5.49 84.86 0.47 1.38 16 21 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 22 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 26 C -0.15 -2.65 7.31 31.12 0.23 -2.42 16 27 H 0.10 0.80 7.84 -2.91 -0.02 0.78 16 28 H 0.10 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.10 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.08 0.44 7.79 -2.39 -0.02 0.42 16 31 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.82 8.10 -2.38 -0.02 0.81 16 33 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.12 0.38 7.40 -2.39 -0.02 0.36 16 35 H 0.12 0.46 8.11 -2.39 -0.02 0.44 16 36 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.10 -0.02 6.44 -2.39 -0.02 -0.03 16 38 H 0.09 0.27 6.33 -2.39 -0.02 0.26 16 39 H 0.10 2.11 7.24 -2.39 -0.02 2.09 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.21 6.92 -2.39 -0.02 1.19 16 42 H 0.10 2.33 7.47 -2.39 -0.02 2.31 16 43 H 0.41 8.51 8.70 -92.71 -0.81 7.71 16 44 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 45 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 46 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.12 1.51 6.72 -2.38 -0.02 1.50 16 48 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -83.46 409.01 2.88 -80.57 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.14 Total: 19.00 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.53 Total: -7.85 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -4.56 Total: -86.67 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.09 Total: -41.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -83.46 2.88 -80.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718847856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.915 kcal (2) G-P(sol) polarization free energy of solvation -83.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds