Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00475 * 2 1 4 4 N 1.34783 * 119.99753 * 179.97438 * 2 1 3 5 5 C 1.48186 * 123.21250 * 2.98408 * 4 2 1 6 6 C 1.52499 * 111.98799 * 128.12645 * 5 4 2 7 7 C 1.54083 * 112.59948 * 46.80456 * 6 5 4 8 8 C 1.51201 * 106.20035 * 304.61507 * 7 6 5 9 9 H 1.09002 * 111.94051 * 303.81995 * 8 7 6 10 10 C 1.50005 * 126.16430 * 161.40387 * 8 7 6 11 11 H 1.09001 * 114.12587 * 104.79858 * 10 8 7 12 12 N 1.46503 * 114.12566 * 332.24691 * 10 8 7 13 13 C 1.34773 * 119.99658 * 104.50049 * 12 10 8 14 14 O 1.21278 * 120.00446 * 0.02562 * 13 12 10 15 15 C 1.50708 * 119.99597 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.47046 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99992 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00391 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47169 * 90.00151 * 21 19 17 23 23 H 1.48505 * 109.46948 * 210.00066 * 21 19 17 24 24 H 1.48497 * 109.46958 * 329.99772 * 21 19 17 25 25 C 1.55774 * 83.86558 * 218.52451 * 10 8 7 26 26 C 1.53000 * 114.08485 * 283.23411 * 25 10 8 27 27 C 1.53000 * 114.08450 * 150.81191 * 25 10 8 28 28 C 1.45376 * 123.16530 * 182.98021 * 4 2 1 29 29 H 1.09006 * 111.69727 * 120.46670 * 28 4 2 30 30 H 1.08996 * 109.47112 * 270.00365 * 1 2 3 31 31 H 1.09002 * 109.47060 * 30.00458 * 1 2 3 32 32 H 1.09004 * 109.47507 * 150.00257 * 1 2 3 33 33 H 1.08997 * 108.87999 * 7.51629 * 5 4 2 34 34 H 1.08999 * 108.99556 * 248.81635 * 5 4 2 35 35 H 1.09002 * 108.83852 * 286.02757 * 6 5 4 36 36 H 1.09003 * 108.83419 * 167.57954 * 6 5 4 37 37 H 1.09004 * 110.09771 * 63.78445 * 7 6 5 38 38 H 1.08999 * 110.09955 * 185.44264 * 7 6 5 39 39 H 0.96998 * 119.99798 * 284.50356 * 12 10 8 40 40 H 1.09004 * 109.47137 * 300.00087 * 15 13 12 41 41 H 1.08991 * 109.47163 * 60.00311 * 15 13 12 42 42 H 0.97000 * 119.99837 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46956 * 183.84809 * 26 25 10 44 44 H 1.09004 * 109.47134 * 303.84574 * 26 25 10 45 45 H 1.08997 * 109.47224 * 63.84995 * 26 25 10 46 46 H 1.09003 * 109.47015 * 325.57786 * 27 25 10 47 47 H 1.08996 * 109.47209 * 85.58174 * 27 25 10 48 48 H 1.09004 * 109.47244 * 205.57974 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5144 -2.4893 -0.0634 6 6 2.0865 -3.3640 -1.1739 7 6 3.6273 -3.3767 -1.1832 8 6 4.0605 -1.9311 -1.2756 9 1 3.6326 -1.4325 -2.1453 10 6 5.4163 -1.3896 -0.9311 11 1 6.0292 -1.1391 -1.7970 12 7 6.1329 -2.1691 0.0813 13 6 7.1482 -2.9767 -0.2841 14 8 7.4688 -3.0578 -1.4509 15 6 7.8850 -3.7791 0.7574 16 16 9.1831 -4.7560 -0.0406 17 6 9.8618 -5.5705 1.3667 18 1 9.4526 -5.3835 2.3485 19 6 10.9226 -6.4525 1.2136 20 7 11.4211 -6.6809 0.0169 21 14 11.6417 -7.3165 2.7054 22 1 10.9293 -8.6008 2.9248 23 1 13.0842 -7.5836 2.4752 24 1 11.4833 -6.4519 3.9023 25 6 4.6067 -0.1897 -0.3555 26 6 4.0688 0.7686 -1.4200 27 6 5.2928 0.5243 0.8108 28 6 3.6309 -1.2484 0.0638 29 1 3.9656 -1.8058 0.9388 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 0.4498 -2.3393 -0.2427 34 1 1.6437 -2.9984 0.8917 35 1 1.7317 -2.9903 -2.1344 36 1 1.7268 -4.3841 -1.0389 37 1 4.0037 -3.8225 -0.2624 38 1 3.9920 -3.9331 -2.0466 39 1 5.8767 -2.1040 1.0146 40 1 8.3345 -3.1038 1.4854 41 1 7.1869 -4.4461 1.2631 42 1 12.1627 -7.2970 -0.0901 43 1 3.5764 1.6114 -0.9347 44 1 4.8944 1.1331 -2.0313 45 1 3.3524 0.2443 -2.0523 46 1 5.8443 -0.2021 1.4077 47 1 5.9821 1.2742 0.4229 48 1 4.5406 1.0095 1.4329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719523974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = -15.479855 kcal Electronic energy + Delta-G solvation = -28657.971036 eV Core-core repulsion = 24841.257297 eV Total energy + Delta-G solvation = -3816.713739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.26754 -39.35215 -38.25383 -36.40768 -33.36477 -32.98637 -32.43353 -30.42397 -30.14935 -29.07192 -27.55124 -26.46978 -25.49302 -24.46954 -23.00174 -20.96631 -20.05689 -19.92232 -18.31511 -17.82255 -17.31225 -16.62912 -16.17636 -15.82882 -15.43491 -15.10201 -14.81176 -14.76850 -14.56005 -14.15026 -13.97895 -13.84206 -13.66956 -13.51960 -13.12465 -13.00915 -12.69781 -12.58383 -12.54672 -12.17112 -12.13303 -11.93873 -11.74886 -11.65550 -11.18929 -11.07388 -11.02989 -10.96232 -10.86772 -10.75729 -10.49724 -10.21951 -9.82078 -9.61492 -9.40925 -9.07591 -8.88091 -8.58609 -8.24265 -6.50531 -6.22403 -3.92823 2.39363 2.65644 2.98222 3.07345 3.21587 3.26915 3.30773 3.66393 3.88176 4.12326 4.19711 4.32981 4.48310 4.56011 4.63857 4.69941 4.83316 4.93268 5.02270 5.05366 5.12741 5.12956 5.15267 5.21561 5.25602 5.48036 5.52429 5.53819 5.60135 5.63650 5.65649 5.68283 5.79906 5.87060 5.90017 5.91770 5.96226 6.07433 6.11518 6.12460 6.21383 6.30155 6.44053 6.68429 7.23073 7.58809 7.67881 8.04160 8.34431 8.60956 9.22988 10.84975 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002529 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.593403 B =11068.377412 C =11374.197592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.509 3.491 3 O -0.533 6.533 4 N -0.599 5.599 5 C 0.111 3.889 6 C -0.132 4.132 7 C -0.100 4.100 8 C -0.147 4.147 9 H 0.103 0.897 10 C 0.145 3.855 11 H 0.107 0.893 12 N -0.718 5.718 13 C 0.536 3.464 14 O -0.512 6.512 15 C -0.153 4.153 16 S -0.058 6.058 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.055 4.055 26 C -0.125 4.125 27 C -0.135 4.135 28 C 0.104 3.896 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.098 0.902 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.566 11.711 0.988 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.410 6.410 4 N -0.333 5.333 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.137 4.137 8 C -0.167 4.167 9 H 0.120 0.880 10 C 0.038 3.962 11 H 0.125 0.875 12 N -0.373 5.373 13 C 0.322 3.678 14 O -0.386 6.386 15 C -0.304 4.304 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.057 4.057 26 C -0.182 4.182 27 C -0.193 4.193 28 C 0.000 4.000 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.613 12.051 -1.063 26.532 hybrid contribution -0.167 -0.716 2.817 2.911 sum -23.780 11.336 1.753 26.402 Atomic orbital electron populations 1.21971 0.92444 1.04578 1.04521 1.20658 0.90155 0.83162 0.76135 1.90642 1.69846 1.31015 1.49537 1.48107 1.06431 1.05781 1.72932 1.21755 0.97010 0.82783 0.99576 1.21862 0.96576 0.99772 0.98763 1.21160 0.93818 0.95830 1.02937 1.23343 0.97806 0.97068 0.98509 0.87956 1.21385 0.91522 0.90926 0.92404 0.87549 1.45751 1.35494 1.46006 1.10041 1.20293 0.78770 0.78751 0.89953 1.90704 1.64912 1.63740 1.19202 1.23534 1.03470 1.02237 1.01165 1.85406 1.34176 1.51381 1.12183 1.22864 1.20885 1.30293 0.94330 0.90964 1.24993 0.95751 0.96011 0.96839 1.70019 1.24407 1.34269 1.21575 0.86171 0.78231 0.79559 0.81563 1.20288 1.20748 1.19705 1.21869 0.93280 0.93474 0.97050 1.21951 0.99761 0.99897 0.96568 1.21671 1.00168 1.00385 0.97048 1.22767 0.80073 0.99190 0.97980 0.88829 0.89073 0.89133 0.90282 0.89713 0.91439 0.91742 0.90397 0.91412 0.91112 0.76808 0.89230 0.89314 0.92184 0.88388 0.93237 0.93072 0.92619 0.92058 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 9.78 36.00 0.35 -0.59 16 2 C 0.51 4.68 7.41 -10.98 -0.08 4.60 16 3 O -0.53 -6.57 12.60 5.56 0.07 -6.50 16 4 N -0.60 -5.05 2.90 -170.05 -0.49 -5.54 16 5 C 0.11 0.67 6.27 -3.37 -0.02 0.65 16 6 C -0.13 -0.91 5.91 -26.42 -0.16 -1.06 16 7 C -0.10 -1.00 5.93 -27.07 -0.16 -1.16 16 8 C -0.15 -1.56 2.98 -95.82 -0.29 -1.84 16 9 H 0.10 1.11 5.99 -51.93 -0.31 0.80 16 10 C 0.14 1.78 3.89 -71.83 -0.28 1.50 16 11 H 0.11 1.54 7.61 -51.93 -0.40 1.14 16 12 N -0.72 -9.43 4.25 -57.66 -0.25 -9.67 16 13 C 0.54 9.71 7.85 -10.98 -0.09 9.62 16 14 O -0.51 -11.37 15.54 5.56 0.09 -11.28 16 15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 21 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.06 -0.59 1.01 -159.15 -0.16 -0.75 16 26 C -0.12 -1.37 7.25 37.16 0.27 -1.10 16 27 C -0.14 -1.42 9.20 37.16 0.34 -1.08 16 28 C 0.10 1.01 2.81 -72.14 -0.20 0.81 16 29 H 0.09 0.91 6.60 -51.93 -0.34 0.57 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.28 6.03 -51.93 -0.31 -0.03 16 33 H 0.08 0.32 5.60 -51.93 -0.29 0.03 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.73 7.97 -51.93 -0.41 0.31 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 4.24 6.23 -40.82 -0.25 3.99 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.10 1.21 5.56 -51.93 -0.29 0.92 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.56 5.92 -51.93 -0.31 0.25 16 46 H 0.05 0.55 6.32 -51.93 -0.33 0.22 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -34.66 380.91 -8.83 -43.50 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.44 Total: 2.62 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.05 Total: -6.06 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.00 Total: -40.52 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.16 Total: -17.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.66 -8.83 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719523974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.016 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds