Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00475 * 2 1 4 4 N 1.34783 * 119.99753 * 179.97438 * 2 1 3 5 5 C 1.48186 * 123.21250 * 2.98408 * 4 2 1 6 6 C 1.52499 * 111.98799 * 128.12645 * 5 4 2 7 7 C 1.54083 * 112.59948 * 46.80456 * 6 5 4 8 8 C 1.51201 * 106.20035 * 304.61507 * 7 6 5 9 9 H 1.09002 * 111.94051 * 303.81995 * 8 7 6 10 10 C 1.50005 * 126.16430 * 161.40387 * 8 7 6 11 11 H 1.09001 * 114.12587 * 104.79858 * 10 8 7 12 12 N 1.46503 * 114.12566 * 332.24691 * 10 8 7 13 13 C 1.34773 * 119.99658 * 104.50049 * 12 10 8 14 14 O 1.21278 * 120.00446 * 0.02562 * 13 12 10 15 15 C 1.50708 * 119.99597 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.47046 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99992 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00391 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47169 * 90.00151 * 21 19 17 23 23 H 1.48505 * 109.46948 * 210.00066 * 21 19 17 24 24 H 1.48497 * 109.46958 * 329.99772 * 21 19 17 25 25 C 1.55774 * 83.86558 * 218.52451 * 10 8 7 26 26 C 1.53000 * 114.08485 * 283.23411 * 25 10 8 27 27 C 1.53000 * 114.08450 * 150.81191 * 25 10 8 28 28 C 1.45376 * 123.16530 * 182.98021 * 4 2 1 29 29 H 1.09006 * 111.69727 * 120.46670 * 28 4 2 30 30 H 1.08996 * 109.47112 * 270.00365 * 1 2 3 31 31 H 1.09002 * 109.47060 * 30.00458 * 1 2 3 32 32 H 1.09004 * 109.47507 * 150.00257 * 1 2 3 33 33 H 1.08997 * 108.87999 * 7.51629 * 5 4 2 34 34 H 1.08999 * 108.99556 * 248.81635 * 5 4 2 35 35 H 1.09002 * 108.83852 * 286.02757 * 6 5 4 36 36 H 1.09003 * 108.83419 * 167.57954 * 6 5 4 37 37 H 1.09004 * 110.09771 * 63.78445 * 7 6 5 38 38 H 1.08999 * 110.09955 * 185.44264 * 7 6 5 39 39 H 0.96998 * 119.99798 * 284.50356 * 12 10 8 40 40 H 1.09004 * 109.47137 * 300.00087 * 15 13 12 41 41 H 1.08991 * 109.47163 * 60.00311 * 15 13 12 42 42 H 0.97000 * 119.99837 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46956 * 183.84809 * 26 25 10 44 44 H 1.09004 * 109.47134 * 303.84574 * 26 25 10 45 45 H 1.08997 * 109.47224 * 63.84995 * 26 25 10 46 46 H 1.09003 * 109.47015 * 325.57786 * 27 25 10 47 47 H 1.08996 * 109.47209 * 85.58174 * 27 25 10 48 48 H 1.09004 * 109.47244 * 205.57974 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5144 -2.4893 -0.0634 6 6 2.0865 -3.3640 -1.1739 7 6 3.6273 -3.3767 -1.1832 8 6 4.0605 -1.9311 -1.2756 9 1 3.6326 -1.4325 -2.1453 10 6 5.4163 -1.3896 -0.9311 11 1 6.0292 -1.1391 -1.7970 12 7 6.1329 -2.1691 0.0813 13 6 7.1482 -2.9767 -0.2841 14 8 7.4688 -3.0578 -1.4509 15 6 7.8850 -3.7791 0.7574 16 16 9.1831 -4.7560 -0.0406 17 6 9.8618 -5.5705 1.3667 18 1 9.4526 -5.3835 2.3485 19 6 10.9226 -6.4525 1.2136 20 7 11.4211 -6.6809 0.0169 21 14 11.6417 -7.3165 2.7054 22 1 10.9293 -8.6008 2.9248 23 1 13.0842 -7.5836 2.4752 24 1 11.4833 -6.4519 3.9023 25 6 4.6067 -0.1897 -0.3555 26 6 4.0688 0.7686 -1.4200 27 6 5.2928 0.5243 0.8108 28 6 3.6309 -1.2484 0.0638 29 1 3.9656 -1.8058 0.9388 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 0.4498 -2.3393 -0.2427 34 1 1.6437 -2.9984 0.8917 35 1 1.7317 -2.9903 -2.1344 36 1 1.7268 -4.3841 -1.0389 37 1 4.0037 -3.8225 -0.2624 38 1 3.9920 -3.9331 -2.0466 39 1 5.8767 -2.1040 1.0146 40 1 8.3345 -3.1038 1.4854 41 1 7.1869 -4.4461 1.2631 42 1 12.1627 -7.2970 -0.0901 43 1 3.5764 1.6114 -0.9347 44 1 4.8944 1.1331 -2.0313 45 1 3.3524 0.2443 -2.0523 46 1 5.8443 -0.2021 1.4077 47 1 5.9821 1.2742 0.4229 48 1 4.5406 1.0095 1.4329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719523974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = -38.034420 kcal Electronic energy + Delta-G solvation = -28658.949075 eV Core-core repulsion = 24841.257297 eV Total energy + Delta-G solvation = -3817.691778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.15891 -40.44236 -39.37359 -37.14856 -34.62548 -34.54459 -33.80082 -31.34885 -30.87252 -30.25767 -28.45643 -27.70534 -27.22155 -25.33315 -23.69128 -22.21145 -21.00086 -20.81204 -19.80112 -19.09975 -18.12083 -17.88260 -17.16387 -16.87295 -16.79410 -16.41134 -16.30199 -15.85712 -15.62015 -15.26574 -15.05897 -14.73288 -14.65359 -14.52304 -14.34124 -14.13781 -13.71515 -13.58241 -13.34133 -13.16099 -13.11404 -13.02011 -12.89059 -12.71082 -12.61748 -12.50520 -12.43002 -12.01139 -11.83827 -11.72161 -11.64101 -11.33570 -11.13818 -11.09142 -10.96728 -10.35629 -10.26606 -10.04601 -9.35425 -8.65636 -8.34138 -6.11792 1.26011 1.42693 1.46405 1.56793 1.59426 1.73890 2.02316 2.18669 2.28073 3.00087 3.06332 3.25654 3.31671 3.53354 3.72333 3.91039 3.93447 3.95392 4.10881 4.15678 4.26685 4.30605 4.39216 4.43765 4.50166 4.50309 4.59967 4.62477 4.73942 4.75383 4.80004 4.81760 4.93665 4.96922 5.00818 5.06230 5.10715 5.15073 5.23817 5.33494 5.34954 5.42095 5.42680 5.57637 5.62611 6.20416 6.44040 6.60212 7.07333 7.22228 7.36687 8.74976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002529 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.593403 B =11068.377412 C =11374.197592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.500 3.500 3 O -0.571 6.571 4 N -0.598 5.598 5 C 0.108 3.892 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.145 4.145 9 H 0.100 0.900 10 C 0.134 3.866 11 H 0.080 0.920 12 N -0.691 5.691 13 C 0.541 3.459 14 O -0.560 6.560 15 C -0.129 4.129 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.258 1.258 25 C -0.048 4.048 26 C -0.117 4.117 27 C -0.133 4.133 28 C 0.111 3.889 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.412 0.588 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.125 11.485 3.448 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.452 6.452 4 N -0.332 5.332 5 C -0.012 4.012 6 C -0.163 4.163 7 C -0.140 4.140 8 C -0.165 4.165 9 H 0.118 0.882 10 C 0.027 3.973 11 H 0.098 0.902 12 N -0.345 5.345 13 C 0.327 3.673 14 O -0.437 6.437 15 C -0.280 4.280 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.182 1.182 25 C -0.050 4.050 26 C -0.174 4.174 27 C -0.190 4.190 28 C 0.007 3.993 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.251 0.749 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.234 11.838 1.429 28.817 hybrid contribution 0.543 -0.555 2.006 2.151 sum -25.691 11.283 3.435 28.269 Atomic orbital electron populations 1.21972 0.89203 1.05731 1.05817 1.21394 0.91745 0.82593 0.75135 1.90628 1.70917 1.32349 1.51257 1.48213 1.05641 1.06837 1.72462 1.21972 0.98336 0.81269 0.99671 1.21826 0.93776 1.01174 0.99489 1.21185 0.96508 0.94724 1.01585 1.23253 0.96184 0.97865 0.99208 0.88216 1.21474 0.91890 0.92305 0.91614 0.90178 1.45396 1.33703 1.44252 1.11151 1.20024 0.79409 0.79047 0.88778 1.90697 1.66593 1.65517 1.20884 1.23363 1.01552 1.01988 1.01114 1.85599 1.37884 1.53526 1.15071 1.23199 1.21180 1.30388 0.94520 0.89903 1.26123 0.96099 0.96741 1.00221 1.70186 1.25123 1.35230 1.24256 0.84961 0.77210 0.78434 0.77426 1.19240 1.20422 1.18223 1.21777 0.93201 0.93016 0.96963 1.21861 0.99481 0.99580 0.96471 1.21650 1.00055 1.00441 0.96860 1.22604 0.81428 0.97946 0.97329 0.88244 0.87562 0.89218 0.87920 0.86642 0.90314 0.91522 0.88722 0.92018 0.93341 0.74901 0.87312 0.87038 0.92028 0.89257 0.93477 0.93176 0.91910 0.92414 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.78 71.23 0.70 -0.55 16 2 C 0.50 8.07 7.41 87.65 0.65 8.72 16 3 O -0.57 -13.46 12.60 -3.03 -0.04 -13.50 16 4 N -0.60 -8.58 2.90 -810.31 -2.35 -10.93 16 5 C 0.11 0.91 6.27 85.89 0.54 1.44 16 6 C -0.12 -1.39 5.91 30.79 0.18 -1.21 16 7 C -0.10 -1.96 5.93 30.37 0.18 -1.78 16 8 C -0.14 -3.01 2.98 -14.17 -0.04 -3.05 16 9 H 0.10 2.15 5.99 -2.39 -0.01 2.13 16 10 C 0.13 3.32 3.89 42.46 0.17 3.48 16 11 H 0.08 2.45 7.61 -2.39 -0.02 2.43 16 12 N -0.69 -17.66 4.25 -454.72 -1.93 -19.60 16 13 C 0.54 19.68 7.85 87.66 0.69 20.37 16 14 O -0.56 -25.80 15.54 -3.02 -0.05 -25.85 16 15 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 16 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 17 C -0.55 -30.84 9.50 67.96 0.65 -30.19 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 21 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 C -0.05 -1.01 1.01 -55.19 -0.06 -1.06 16 26 C -0.12 -2.58 7.25 71.98 0.52 -2.06 16 27 C -0.13 -2.67 9.20 71.98 0.66 -2.00 16 28 C 0.11 2.01 2.81 42.87 0.12 2.13 16 29 H 0.10 1.68 6.60 -2.38 -0.02 1.67 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.26 6.03 -2.39 -0.01 0.24 16 33 H 0.12 0.30 5.60 -2.39 -0.01 0.29 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.41 8.03 6.23 -92.71 -0.58 7.45 16 40 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 41 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.09 2.21 5.56 -2.39 -0.01 2.20 16 44 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 45 H 0.05 1.09 5.92 -2.39 -0.01 1.08 16 46 H 0.06 1.14 6.32 -2.39 -0.02 1.12 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -78.75 380.91 3.04 -75.71 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.40 Total: 22.82 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.86 Total: -9.13 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -4.00 Total: -86.10 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.09 Total: -39.35 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -78.75 3.04 -75.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719523974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.679 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds