Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99679 * 2 1 4 4 C 1.52997 * 109.47473 * 90.00212 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 H 1.09005 * 109.63925 * 59.58006 * 9 7 6 11 11 C 1.53025 * 109.64461 * 298.94573 * 9 7 6 12 12 C 1.50063 * 110.14843 * 190.87922 * 11 9 7 13 13 C 1.29446 * 124.07526 * 17.12810 * 12 11 9 14 14 C 1.50069 * 124.07502 * 359.53343 * 13 12 11 15 15 C 1.53019 * 110.14725 * 17.12906 * 14 13 12 16 16 C 1.34774 * 120.00048 * 179.97438 * 2 1 3 17 17 O 1.21286 * 119.99764 * 179.97438 * 16 2 1 18 18 C 1.50697 * 120.00258 * 0.02562 * 16 2 1 19 19 S 1.81001 * 109.47081 * 180.02562 * 18 16 2 20 20 C 1.76207 * 99.99686 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99614 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99805 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46647 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46933 * 119.99437 * 24 22 20 27 27 H 1.48495 * 109.46751 * 239.99868 * 24 22 20 28 28 H 1.08996 * 109.47220 * 90.00398 * 1 2 3 29 29 H 1.09001 * 109.46688 * 210.00173 * 1 2 3 30 30 H 1.08998 * 109.47230 * 329.99640 * 1 2 3 31 31 H 1.09002 * 109.47129 * 329.99954 * 3 2 1 32 32 H 1.08998 * 109.46845 * 210.00761 * 3 2 1 33 33 H 1.09002 * 109.47153 * 59.99757 * 4 3 2 34 34 H 1.09001 * 109.46832 * 299.99948 * 4 3 2 35 35 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 36 36 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 37 37 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 38 38 H 1.09003 * 109.35542 * 311.08673 * 11 9 7 39 39 H 1.08998 * 109.35801 * 70.66673 * 11 9 7 40 40 H 1.07993 * 117.96508 * 197.10497 * 12 11 9 41 41 H 1.08004 * 117.96191 * 179.50789 * 13 12 11 42 42 H 1.09001 * 109.35636 * 256.92032 * 14 13 12 43 43 H 1.08996 * 109.24780 * 137.26896 * 14 13 12 44 44 H 1.09007 * 109.64121 * 190.88367 * 15 14 13 45 45 H 1.08996 * 109.64597 * 70.25278 * 15 14 13 46 46 H 1.09002 * 109.46816 * 299.99717 * 18 16 2 47 47 H 1.08991 * 109.47311 * 59.99425 * 18 16 2 48 48 H 0.97005 * 120.00318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2169 3.0359 1.4423 6 7 3.4616 3.4585 2.8235 7 6 4.1242 4.6061 3.0697 8 8 4.5182 5.2885 2.1480 9 6 4.3755 5.0411 4.4906 10 1 4.9582 4.2798 5.0092 11 6 3.0403 5.2507 5.2082 12 6 3.2633 5.9323 6.5264 13 6 4.3482 6.5641 6.8417 14 6 5.5383 6.6949 5.9370 15 6 5.1425 6.3695 4.4951 16 6 2.1389 -1.1672 0.0005 17 8 3.3518 -1.1671 0.0001 18 6 1.3855 -2.4723 0.0005 19 16 2.5618 -3.8480 0.0020 20 6 1.4417 -5.2082 0.0026 21 1 0.3764 -5.0305 0.0024 22 6 1.9285 -6.5080 0.0043 23 7 3.2268 -6.7246 0.0050 24 14 0.7410 -7.9501 0.0041 25 1 -0.6544 -7.4421 0.0026 26 1 0.9682 -8.7781 -1.2075 27 1 0.9654 -8.7761 1.2176 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1385 -0.5139 33 1 3.0416 0.9509 1.9563 34 1 1.5001 1.8408 1.9563 35 1 4.1693 2.9060 0.9284 36 1 2.6274 3.7952 0.9287 37 1 3.1468 2.9124 3.5609 38 1 2.3898 5.8675 4.5880 39 1 2.5651 4.2843 5.3768 40 1 2.4693 5.8935 7.2573 41 1 4.3998 7.0263 7.8165 42 1 6.3170 6.0051 6.2624 43 1 5.9165 7.7159 5.9861 44 1 6.0385 6.2773 3.8811 45 1 4.5054 7.1618 4.1023 46 1 0.7585 -2.5298 0.8903 47 1 0.7591 -2.5302 -0.8896 48 1 3.5670 -7.6330 0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720442660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = -76.292002 kcal Electronic energy + Delta-G solvation = -26033.965071 eV Core-core repulsion = 22214.614320 eV Total energy + Delta-G solvation = -3819.350752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50626 -39.53412 -38.08032 -36.21683 -35.02934 -32.54046 -32.45195 -31.48557 -31.08766 -29.14315 -27.08778 -25.66898 -25.28237 -24.07169 -23.05666 -21.98628 -20.51651 -19.19331 -18.37183 -17.71022 -17.63437 -16.76129 -16.46261 -16.18453 -15.64987 -15.52449 -15.37420 -14.82685 -14.68852 -14.35311 -14.13143 -13.95008 -13.64940 -13.42263 -13.35464 -13.06888 -12.82054 -12.68473 -12.64145 -12.56180 -12.41583 -12.18327 -11.85191 -11.80408 -11.41645 -11.19677 -11.09183 -11.04059 -11.00769 -10.78964 -10.76778 -9.99323 -9.81949 -9.44584 -9.40541 -9.33425 -9.09623 -8.60397 -8.24743 -6.52671 -6.23945 -3.94707 1.84814 2.37487 2.76059 2.97360 3.05596 3.19704 3.24879 3.29470 3.58478 4.14494 4.17985 4.21912 4.40350 4.64958 4.68656 4.76617 4.80865 4.86835 4.94825 4.97335 5.00882 5.09416 5.10849 5.11486 5.18890 5.26498 5.35114 5.39938 5.41947 5.49424 5.50830 5.57055 5.62227 5.67601 5.79855 5.86035 5.88622 5.91646 5.98431 6.10335 6.15860 6.20220 6.49415 6.59620 7.20391 7.47731 7.57693 7.95033 8.33089 8.51553 9.21496 10.83508 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.001658 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.486427 B =16884.142151 C =17360.442595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.122 3.878 6 N -0.729 5.729 7 C 0.517 3.483 8 O -0.539 6.539 9 C -0.109 4.109 10 H 0.100 0.900 11 C -0.081 4.081 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.094 4.094 15 C -0.099 4.099 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 26.420 10.926 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.187 4.187 5 C -0.002 4.002 6 N -0.381 5.381 7 C 0.303 3.697 8 O -0.416 6.416 9 C -0.130 4.130 10 H 0.118 0.882 11 C -0.118 4.118 12 C -0.175 4.175 13 C -0.171 4.171 14 C -0.131 4.131 15 C -0.137 4.137 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.301 4.301 19 S 0.164 5.836 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.846 26.770 10.229 28.717 hybrid contribution -2.528 -1.276 0.496 2.875 sum -4.374 25.494 10.725 28.002 Atomic orbital electron populations 1.21770 0.79620 1.03071 1.01847 1.47863 1.06844 1.05603 1.75854 1.21218 0.98459 0.85017 0.95500 1.22179 1.00816 0.96563 0.99154 1.21274 1.00629 0.95525 0.82791 1.46048 1.58600 1.24245 1.09166 1.20628 0.77216 0.80483 0.91353 1.90705 1.50586 1.53906 1.46373 1.21426 0.98722 1.00090 0.92765 0.88161 1.20404 0.95773 1.01047 0.94562 1.21965 0.98419 0.99579 0.97500 1.22120 0.95500 0.99690 0.99836 1.20519 0.96525 1.02230 0.93828 1.21424 1.00699 0.95403 0.96204 1.20377 0.87965 0.84609 0.75062 1.90701 1.13710 1.86795 1.47573 1.23558 1.04559 0.97257 1.04714 1.85410 1.08080 0.93388 1.96702 1.22898 0.94327 0.92192 1.58900 0.90888 1.24994 0.95670 0.98393 0.94528 1.70025 1.11736 1.21584 1.46889 0.86118 0.80338 0.81126 0.77921 1.19617 1.20543 1.20569 0.92648 0.90636 0.91446 0.90565 0.89447 0.90375 0.91260 0.91031 0.91387 0.76450 0.90337 0.90445 0.87538 0.87808 0.90604 0.90602 0.90558 0.91102 0.89279 0.89252 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.24 59.85 0.61 1.38 16 2 N -0.63 -8.24 2.87 -181.57 -0.52 -8.76 16 3 C 0.12 1.33 5.41 -4.04 -0.02 1.31 16 4 C -0.15 -1.39 5.65 -26.73 -0.15 -1.54 16 5 C 0.12 1.13 5.67 -4.04 -0.02 1.10 16 6 N -0.73 -6.12 5.47 -60.30 -0.33 -6.45 16 7 C 0.52 5.17 7.13 -10.98 -0.08 5.09 16 8 O -0.54 -7.50 15.91 5.56 0.09 -7.42 16 9 C -0.11 -0.79 2.58 -91.56 -0.24 -1.03 16 10 H 0.10 0.65 8.13 -51.93 -0.42 0.22 16 11 C -0.08 -0.48 5.29 -28.18 -0.15 -0.63 16 12 C -0.16 -0.92 9.80 -35.90 -0.35 -1.27 16 13 C -0.15 -0.91 9.80 -35.90 -0.35 -1.26 16 14 C -0.09 -0.56 6.12 -28.18 -0.17 -0.73 16 15 C -0.10 -0.76 4.69 -26.52 -0.12 -0.88 16 16 C 0.53 9.78 7.69 -10.99 -0.08 9.69 16 17 O -0.51 -11.42 15.44 5.55 0.09 -11.33 16 18 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 2.48 8.22 -40.82 -0.34 2.14 16 38 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.08 0.35 7.95 -51.93 -0.41 -0.06 16 40 H 0.11 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 45 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.09 1.62 7.40 -51.91 -0.38 1.24 16 47 H 0.09 1.66 8.11 -51.92 -0.42 1.23 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -36.11 407.31 -9.94 -46.05 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.14 Total: -0.88 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.76 Total: -4.38 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.12 Total: -40.45 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.11 -9.94 -46.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720442660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.238 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds