Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 C 1.53003 * 109.46922 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.46655 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99876 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99676 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99870 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.46812 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99738 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99995 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00335 * 180.02562 * 13 11 10 15 15 Si 1.86812 * 120.00028 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46882 * 89.99767 * 15 13 11 17 17 H 1.48500 * 109.47071 * 210.00240 * 15 13 11 18 18 H 1.48499 * 109.46951 * 329.99931 * 15 13 11 19 19 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 20 20 O 1.21283 * 120.00463 * 179.97438 * 19 2 1 21 21 C 1.50700 * 119.99675 * 359.72090 * 19 2 1 22 22 H 1.09005 * 115.52880 * 325.85859 * 21 19 2 23 23 C 1.53001 * 117.46033 * 111.35951 * 21 19 2 24 24 H 1.08994 * 119.30065 * 356.28698 * 23 21 19 25 25 C 1.54272 * 118.19793 * 201.21176 * 23 21 19 26 26 C 1.54892 * 104.19761 * 272.21486 * 25 23 21 27 27 C 1.54822 * 102.74553 * 37.91150 * 26 25 23 28 28 C 1.53001 * 117.46025 * 180.36470 * 21 19 2 29 29 H 1.09003 * 119.30131 * 3.71007 * 28 21 19 30 30 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 31 31 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 32 32 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 33 33 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 34 34 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 35 35 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 36 36 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 37 37 H 1.09000 * 109.47038 * 299.99379 * 5 4 3 38 38 H 1.08993 * 109.47503 * 59.99940 * 5 4 3 39 39 H 0.97006 * 120.00311 * 359.97438 * 6 5 4 40 40 H 1.09000 * 109.47203 * 300.00027 * 9 7 6 41 41 H 1.08993 * 109.46909 * 60.00324 * 9 7 6 42 42 H 0.97002 * 120.00683 * 180.02562 * 14 13 11 43 43 H 1.09001 * 110.48268 * 30.88809 * 25 23 21 44 44 H 1.08997 * 110.48771 * 153.53047 * 25 23 21 45 45 H 1.08997 * 110.75455 * 156.25968 * 26 25 23 46 46 H 1.09004 * 110.74650 * 279.62748 * 26 25 23 47 47 H 1.08997 * 110.46372 * 203.40224 * 27 26 25 48 48 H 1.09003 * 110.48345 * 80.77440 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2180 3.0352 -1.4425 6 7 3.4615 3.4584 -2.8237 7 6 4.1240 4.6060 -3.0700 8 8 4.5189 5.2880 -2.1481 9 6 4.3750 5.0411 -4.4909 10 16 5.2806 6.6083 -4.4908 11 6 5.4326 6.8738 -6.2261 12 1 5.0179 6.1579 -6.9203 13 6 6.0853 8.0030 -6.7008 14 7 6.1985 8.2017 -7.9970 15 14 6.8033 9.2409 -5.5000 16 1 8.2053 8.8677 -5.1835 17 1 6.7769 10.5947 -6.1098 18 1 5.9982 9.2444 -4.2522 19 6 2.1389 -1.1672 -0.0005 20 8 3.3517 -1.1672 -0.0010 21 6 1.3854 -2.4723 0.0053 22 1 0.4478 -2.4710 0.5613 23 6 1.4556 -3.3330 -1.2577 24 1 1.9873 -2.9561 -2.1313 25 6 0.3470 -4.3809 -1.4882 26 6 0.8602 -5.6445 -0.7540 27 6 1.5315 -5.0557 0.5108 28 6 2.2084 -3.7621 0.0130 29 1 3.2949 -3.7012 0.0756 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1384 0.5137 35 1 3.0415 0.9508 -1.9564 36 1 1.5000 1.8408 -1.9563 37 1 2.6293 3.7950 -0.9285 38 1 4.1704 2.9044 -0.9289 39 1 3.1460 2.9127 -3.5610 40 1 4.9641 4.2815 -5.0048 41 1 3.4226 5.1715 -5.0045 42 1 6.6550 8.9906 -8.3288 43 1 -0.5937 -4.0429 -1.0536 44 1 0.2264 -4.5808 -2.5529 45 1 0.0306 -6.2976 -0.4832 46 1 1.5889 -6.1771 -1.3652 47 1 2.2752 -5.7482 0.9049 48 1 0.7823 -4.8270 1.2688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720446586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = -57.954710 kcal Electronic energy + Delta-G solvation = -25918.192887 eV Core-core repulsion = 22099.637300 eV Total energy + Delta-G solvation = -3818.555587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99231 -39.35344 -38.96931 -36.49723 -35.03805 -32.62284 -32.42777 -31.76274 -29.41442 -28.77619 -27.33787 -26.28837 -25.58201 -23.73494 -22.03371 -21.17159 -20.45103 -20.18843 -19.44445 -17.86547 -17.80881 -16.90897 -16.40243 -16.04571 -15.82294 -15.64458 -15.33434 -15.18717 -14.92388 -14.55901 -13.92214 -13.82557 -13.72354 -13.57611 -13.28153 -13.22099 -12.99081 -12.80164 -12.67321 -12.58022 -12.02006 -11.93345 -11.87548 -11.82482 -11.66990 -11.38718 -11.25489 -11.12891 -10.99497 -10.63707 -10.59926 -10.37927 -10.06070 -9.84947 -9.55453 -9.12403 -9.00982 -8.94824 -8.48808 -6.90568 -6.27858 -3.99549 2.01529 2.42794 2.79937 2.99625 3.20156 3.32875 3.36358 3.51792 3.67483 3.79844 4.14137 4.19385 4.34365 4.35267 4.58331 4.61192 4.65353 4.67961 4.70164 4.73277 4.83657 4.84835 4.90894 5.00549 5.04396 5.10849 5.11457 5.16687 5.19486 5.29194 5.31668 5.33212 5.49725 5.53599 5.54828 5.56474 5.74049 5.75559 5.83315 5.85798 5.89053 6.02862 6.07646 6.53708 6.89853 7.62142 7.76427 7.95137 8.42607 8.50680 9.18372 10.81339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.001563 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.099653 B =17911.032666 C =18417.137558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.118 3.882 4 C -0.145 4.145 5 C 0.125 3.875 6 N -0.737 5.737 7 C 0.530 3.470 8 O -0.520 6.520 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.543 3.457 20 O -0.532 6.532 21 C -0.164 4.164 22 H 0.121 0.879 23 C -0.138 4.138 24 H 0.115 0.885 25 C -0.096 4.096 26 C -0.124 4.124 27 C -0.097 4.097 28 C -0.131 4.131 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -28.019 17.469 37.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.005 4.005 4 C -0.184 4.184 5 C 0.000 4.000 6 N -0.391 5.391 7 C 0.316 3.684 8 O -0.394 6.394 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C 0.331 3.669 20 O -0.408 6.408 21 C -0.185 4.185 22 H 0.138 0.862 23 C -0.156 4.156 24 H 0.133 0.867 25 C -0.133 4.133 26 C -0.162 4.162 27 C -0.134 4.134 28 C -0.149 4.149 29 H 0.140 0.860 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.428 -26.759 18.874 36.636 hybrid contribution -0.361 -0.268 -1.262 1.339 sum -16.789 -27.027 17.613 36.367 Atomic orbital electron populations 1.21847 0.79153 1.03624 1.02007 1.47744 1.07188 1.05813 1.73937 1.21386 0.98328 0.84255 0.96515 1.22132 1.01084 0.97236 0.97968 1.21146 1.00194 0.94774 0.83879 1.45939 1.60125 1.24811 1.08254 1.20283 0.76839 0.80066 0.91217 1.90698 1.49461 1.53226 1.46051 1.23280 1.05096 1.03715 0.95379 1.84787 1.72880 1.22107 1.11794 1.22324 1.43255 1.12404 0.88956 0.89394 1.24710 0.94456 0.97035 0.95074 1.69936 1.41432 1.28238 1.12107 0.86732 0.81308 0.80943 0.82855 1.19196 1.19936 1.15930 1.19677 0.87302 0.84306 0.75576 1.90727 1.13808 1.87178 1.49128 1.22380 1.01872 0.90141 1.04123 0.86158 1.23259 1.01194 0.99433 0.91741 0.86707 1.22011 0.96776 0.93415 1.01146 1.22701 1.00079 0.97198 0.96182 1.21995 0.99365 0.94511 0.97570 1.23280 0.99256 0.91734 1.00664 0.85952 0.92399 0.90653 0.90684 0.89882 0.89277 0.90786 0.91086 0.91471 0.91343 0.76697 0.88495 0.88470 0.91950 0.91149 0.90693 0.91041 0.90992 0.90718 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 10.00 59.84 0.60 0.90 16 2 N -0.61 -4.53 2.87 -181.57 -0.52 -5.05 16 3 C 0.12 0.93 5.41 -4.04 -0.02 0.90 16 4 C -0.15 -1.21 5.65 -26.72 -0.15 -1.36 16 5 C 0.12 1.40 5.67 -4.04 -0.02 1.37 16 6 N -0.74 -9.62 5.56 -60.29 -0.33 -9.96 16 7 C 0.53 9.64 7.85 -10.98 -0.09 9.55 16 8 O -0.52 -11.47 15.86 5.56 0.09 -11.38 16 9 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 10 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 11 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 12 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 13 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 14 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 15 Si 0.86 22.00 27.74 -169.99 -4.72 17.28 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 19 C 0.54 5.18 7.46 -10.98 -0.08 5.10 16 20 O -0.53 -7.24 15.90 5.55 0.09 -7.15 16 21 C -0.16 -1.10 4.35 -91.77 -0.40 -1.50 16 22 H 0.12 0.57 7.26 -51.93 -0.38 0.19 16 23 C -0.14 -0.86 6.64 -89.54 -0.59 -1.45 16 24 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 25 C -0.10 -0.41 6.63 -25.07 -0.17 -0.58 16 26 C -0.12 -0.50 6.91 -24.77 -0.17 -0.67 16 27 C -0.10 -0.47 6.62 -25.11 -0.17 -0.63 16 28 C -0.13 -0.91 6.39 -89.54 -0.57 -1.49 16 29 H 0.12 1.08 7.78 -51.93 -0.40 0.68 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 32 H 0.07 0.23 6.65 -51.93 -0.35 -0.12 16 33 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.09 0.86 7.42 -51.93 -0.39 0.47 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -36.73 406.72 -10.07 -46.80 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.19 Total: -0.82 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.40 Total: -4.24 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.08 Total: -40.98 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.73 -10.07 -46.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720446586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.154 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds