Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 C 1.53003 * 109.46922 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.46655 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99876 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99676 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99870 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.46812 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99738 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99995 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00335 * 180.02562 * 13 11 10 15 15 Si 1.86812 * 120.00028 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46882 * 89.99767 * 15 13 11 17 17 H 1.48500 * 109.47071 * 210.00240 * 15 13 11 18 18 H 1.48499 * 109.46951 * 329.99931 * 15 13 11 19 19 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 20 20 O 1.21283 * 120.00463 * 179.97438 * 19 2 1 21 21 C 1.50700 * 119.99675 * 359.72090 * 19 2 1 22 22 H 1.09005 * 115.52880 * 325.85859 * 21 19 2 23 23 C 1.53001 * 117.46033 * 111.35951 * 21 19 2 24 24 H 1.08994 * 119.30065 * 356.28698 * 23 21 19 25 25 C 1.54272 * 118.19793 * 201.21176 * 23 21 19 26 26 C 1.54892 * 104.19761 * 272.21486 * 25 23 21 27 27 C 1.54822 * 102.74553 * 37.91150 * 26 25 23 28 28 C 1.53001 * 117.46025 * 180.36470 * 21 19 2 29 29 H 1.09003 * 119.30131 * 3.71007 * 28 21 19 30 30 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 31 31 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 32 32 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 33 33 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 34 34 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 35 35 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 36 36 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 37 37 H 1.09000 * 109.47038 * 299.99379 * 5 4 3 38 38 H 1.08993 * 109.47503 * 59.99940 * 5 4 3 39 39 H 0.97006 * 120.00311 * 359.97438 * 6 5 4 40 40 H 1.09000 * 109.47203 * 300.00027 * 9 7 6 41 41 H 1.08993 * 109.46909 * 60.00324 * 9 7 6 42 42 H 0.97002 * 120.00683 * 180.02562 * 14 13 11 43 43 H 1.09001 * 110.48268 * 30.88809 * 25 23 21 44 44 H 1.08997 * 110.48771 * 153.53047 * 25 23 21 45 45 H 1.08997 * 110.75455 * 156.25968 * 26 25 23 46 46 H 1.09004 * 110.74650 * 279.62748 * 26 25 23 47 47 H 1.08997 * 110.46372 * 203.40224 * 27 26 25 48 48 H 1.09003 * 110.48345 * 80.77440 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2180 3.0352 -1.4425 6 7 3.4615 3.4584 -2.8237 7 6 4.1240 4.6060 -3.0700 8 8 4.5189 5.2880 -2.1481 9 6 4.3750 5.0411 -4.4909 10 16 5.2806 6.6083 -4.4908 11 6 5.4326 6.8738 -6.2261 12 1 5.0179 6.1579 -6.9203 13 6 6.0853 8.0030 -6.7008 14 7 6.1985 8.2017 -7.9970 15 14 6.8033 9.2409 -5.5000 16 1 8.2053 8.8677 -5.1835 17 1 6.7769 10.5947 -6.1098 18 1 5.9982 9.2444 -4.2522 19 6 2.1389 -1.1672 -0.0005 20 8 3.3517 -1.1672 -0.0010 21 6 1.3854 -2.4723 0.0053 22 1 0.4478 -2.4710 0.5613 23 6 1.4556 -3.3330 -1.2577 24 1 1.9873 -2.9561 -2.1313 25 6 0.3470 -4.3809 -1.4882 26 6 0.8602 -5.6445 -0.7540 27 6 1.5315 -5.0557 0.5108 28 6 2.2084 -3.7621 0.0130 29 1 3.2949 -3.7012 0.0756 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1384 0.5137 35 1 3.0415 0.9508 -1.9564 36 1 1.5000 1.8408 -1.9563 37 1 2.6293 3.7950 -0.9285 38 1 4.1704 2.9044 -0.9289 39 1 3.1460 2.9127 -3.5610 40 1 4.9641 4.2815 -5.0048 41 1 3.4226 5.1715 -5.0045 42 1 6.6550 8.9906 -8.3288 43 1 -0.5937 -4.0429 -1.0536 44 1 0.2264 -4.5808 -2.5529 45 1 0.0306 -6.2976 -0.4832 46 1 1.5889 -6.1771 -1.3652 47 1 2.2752 -5.7482 0.9049 48 1 0.7823 -4.8270 1.2688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720446586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = -82.141119 kcal Electronic energy + Delta-G solvation = -25919.241688 eV Core-core repulsion = 22099.637300 eV Total energy + Delta-G solvation = -3819.604388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59003 -40.68282 -39.59834 -37.32824 -36.07013 -34.68419 -33.38176 -32.48277 -30.76412 -29.14822 -27.98135 -27.77674 -27.01310 -24.41393 -22.78389 -21.88438 -21.47483 -20.67827 -20.08022 -19.88008 -18.41156 -17.88183 -17.70338 -17.16048 -16.98772 -16.85891 -16.38184 -16.08925 -15.71889 -15.60175 -15.56573 -14.94309 -14.71489 -14.38604 -14.19662 -14.03707 -13.93908 -13.76352 -13.42328 -13.35817 -13.28701 -13.03061 -12.96485 -12.73518 -12.61515 -12.45300 -12.29252 -11.99819 -11.88953 -11.87256 -11.70365 -11.18237 -11.15584 -11.09108 -10.95126 -10.63145 -10.55481 -10.18311 -9.75373 -9.01293 -8.52516 -6.23757 0.97218 1.30979 1.33897 1.45911 1.53019 1.54627 1.85763 2.22962 2.27678 2.67915 2.70713 2.85711 3.31990 3.67344 3.74496 3.79009 3.83234 3.92941 3.99775 4.13285 4.19474 4.20785 4.24161 4.35245 4.39399 4.44721 4.48557 4.51438 4.54177 4.65395 4.66846 4.78059 4.81800 4.95417 4.96706 5.02376 5.08451 5.14592 5.21575 5.22393 5.26132 5.36749 5.48660 5.50810 5.69629 6.10176 6.30519 6.42412 6.92572 7.08981 7.15345 8.59830 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.001563 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.099653 B =17911.032666 C =18417.137558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.116 3.884 4 C -0.128 4.128 5 C 0.125 3.875 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.563 6.563 9 C -0.112 4.112 10 S -0.176 6.176 11 C -0.531 4.531 12 H 0.062 0.938 13 C 0.047 3.953 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.257 1.257 18 H -0.237 1.237 19 C 0.533 3.467 20 O -0.586 6.586 21 C -0.157 4.157 22 H 0.148 0.852 23 C -0.133 4.133 24 H 0.098 0.902 25 C -0.090 4.090 26 C -0.122 4.122 27 C -0.092 4.092 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.277 0.723 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.559 -29.083 18.594 40.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C -0.007 4.007 4 C -0.167 4.167 5 C 0.001 3.999 6 N -0.367 5.367 7 C 0.319 3.681 8 O -0.441 6.441 9 C -0.262 4.262 10 S 0.050 5.950 11 C -0.678 4.678 12 H 0.081 0.919 13 C -0.159 4.159 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.188 1.188 17 H -0.182 1.182 18 H -0.161 1.161 19 C 0.322 3.678 20 O -0.467 6.467 21 C -0.178 4.178 22 H 0.166 0.834 23 C -0.152 4.152 24 H 0.116 0.884 25 C -0.128 4.128 26 C -0.159 4.159 27 C -0.129 4.129 28 C -0.167 4.167 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.260 -27.861 19.981 39.325 hybrid contribution 0.436 -0.069 -1.616 1.675 sum -18.824 -27.931 18.365 38.364 Atomic orbital electron populations 1.22133 0.76562 1.05032 1.03484 1.47856 1.08733 1.04905 1.72525 1.21370 0.98037 0.85248 0.96042 1.21970 1.01313 0.94886 0.98489 1.21261 0.99975 0.96343 0.82318 1.45738 1.57977 1.23024 1.09941 1.19978 0.77176 0.81068 0.89837 1.90688 1.51701 1.54968 1.46791 1.23273 1.05246 1.00477 0.97249 1.84713 1.74515 1.26657 1.09074 1.22464 1.42873 1.11967 0.90519 0.91940 1.25557 0.94833 0.98849 0.96653 1.70010 1.42410 1.29277 1.13706 0.85867 0.80455 0.79335 0.80709 1.18816 1.18159 1.16067 1.20251 0.86910 0.85778 0.74814 1.90701 1.16185 1.88003 1.51770 1.22403 1.02234 0.88459 1.04716 0.83434 1.23301 1.01645 0.99439 0.90782 0.88404 1.22040 0.96508 0.92513 1.01706 1.22709 1.00419 0.97280 0.95535 1.22003 0.99495 0.93178 0.98268 1.23300 0.98093 0.93211 1.02061 0.88928 0.90866 0.89229 0.89377 0.87313 0.91774 0.92408 0.88769 0.90804 0.92991 0.74711 0.87057 0.86532 0.91336 0.89427 0.90193 0.89318 0.91583 0.90800 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.00 127.77 1.28 1.59 16 2 N -0.61 -7.98 2.87 -846.76 -2.43 -10.41 16 3 C 0.12 1.67 5.41 86.38 0.47 2.14 16 4 C -0.13 -1.91 5.65 30.60 0.17 -1.74 16 5 C 0.13 2.62 5.67 86.38 0.49 3.11 16 6 N -0.71 -17.26 5.56 -463.06 -2.57 -19.84 16 7 C 0.53 18.74 7.85 87.66 0.69 19.43 16 8 O -0.56 -24.57 15.86 -3.02 -0.05 -24.62 16 9 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 10 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 11 C -0.53 -31.23 10.04 67.95 0.68 -30.54 16 12 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 13 C 0.05 2.76 5.50 84.86 0.47 3.22 16 14 N -0.92 -56.10 13.97 21.65 0.30 -55.80 16 15 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 16 H -0.26 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 19 C 0.53 10.05 7.46 87.66 0.65 10.71 16 20 O -0.59 -16.88 15.90 -3.04 -0.05 -16.93 16 21 C -0.16 -1.93 4.35 -11.54 -0.05 -1.98 16 22 H 0.15 0.95 7.26 -2.38 -0.02 0.93 16 23 C -0.13 -1.55 6.64 -10.09 -0.07 -1.62 16 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 25 C -0.09 -0.55 6.63 31.67 0.21 -0.34 16 26 C -0.12 -0.73 6.91 31.86 0.22 -0.51 16 27 C -0.09 -0.76 6.62 31.64 0.21 -0.55 16 28 C -0.15 -2.08 6.39 -10.09 -0.06 -2.14 16 29 H 0.09 1.84 7.78 -2.39 -0.02 1.82 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.20 8.07 -2.39 -0.02 0.18 16 32 H 0.09 0.20 6.65 -2.39 -0.02 0.19 16 33 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 34 H 0.06 1.27 7.42 -2.39 -0.02 1.25 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.42 7.43 8.47 -92.70 -0.79 6.65 16 40 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 41 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16 42 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -82.25 406.72 1.97 -80.27 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.12 Total: 13.13 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.79 Total: -3.05 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -4.70 Total: -86.05 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.10 Total: -41.55 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -82.25 1.97 -80.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720446586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.871 kcal (2) G-P(sol) polarization free energy of solvation -82.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds