Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47709 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00527 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00002 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.46974 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00217 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99646 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00303 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00127 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47209 * 59.99759 * 15 13 11 17 17 H 1.48500 * 109.47369 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47024 * 300.00158 * 15 13 11 19 19 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 20 20 O 1.21279 * 120.00031 * 180.02562 * 19 2 1 21 21 C 1.50699 * 119.99563 * 0.02562 * 19 2 1 22 22 H 1.08998 * 115.55538 * 34.41104 * 21 19 2 23 23 C 1.53002 * 117.49862 * 248.74042 * 21 19 2 24 24 C 1.52998 * 117.49735 * 180.08369 * 21 19 2 25 25 H 1.09004 * 117.50272 * 359.97438 * 24 21 19 26 26 C 1.53004 * 117.50173 * 214.97612 * 24 21 19 27 27 C 1.53008 * 117.49724 * 128.61815 * 26 24 21 28 28 C 1.53001 * 117.49324 * 59.99988 * 26 24 21 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 1.09007 * 109.46869 * 300.00135 * 4 3 2 35 35 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 36 36 H 1.09000 * 109.47178 * 300.00127 * 5 4 3 37 37 H 1.09003 * 109.47406 * 59.99794 * 5 4 3 38 38 H 0.97003 * 119.99010 * 0.02562 * 6 5 4 39 39 H 1.08998 * 109.47516 * 299.99900 * 9 7 6 40 40 H 1.09000 * 109.47390 * 60.00234 * 9 7 6 41 41 H 0.96997 * 119.99595 * 180.02562 * 14 13 11 42 42 H 1.09000 * 117.49762 * 0.02562 * 23 21 19 43 43 H 1.09003 * 117.50172 * 145.02094 * 23 21 19 44 44 H 1.08995 * 115.55454 * 274.33246 * 26 24 21 45 45 H 1.08995 * 117.49991 * 0.02562 * 27 26 24 46 46 H 1.09001 * 117.49287 * 145.02920 * 27 26 24 47 47 H 1.09002 * 117.49910 * 214.97695 * 28 26 24 48 48 H 1.09001 * 117.50156 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 6 3.2170 3.0357 1.4426 6 7 3.4606 3.4590 2.8238 7 6 4.1230 4.6065 3.0701 8 8 4.5171 5.2890 2.1482 9 6 4.3741 5.0416 4.4909 10 16 5.2784 6.6095 4.4908 11 6 5.4321 6.8742 6.2261 12 1 5.0187 6.1575 6.9203 13 6 6.0843 8.0036 6.7008 14 7 6.5886 8.8768 5.8547 15 14 6.2479 8.2837 8.5404 16 1 6.9968 7.1547 9.1484 17 1 6.9797 9.5526 8.7848 18 1 4.8965 8.3668 9.1505 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0010 21 6 1.3854 -2.4723 0.0005 22 1 0.4479 -2.4739 -0.5556 23 6 1.4578 -3.3298 1.2655 24 6 2.2075 -3.7626 0.0031 25 1 3.2934 -3.6677 0.0044 26 6 1.6505 -4.9568 -0.7746 27 6 2.5811 -5.6436 -1.7763 28 6 1.4236 -4.7774 -2.2770 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 1.5000 1.8408 1.9563 35 1 3.0416 0.9508 1.9565 36 1 4.1694 2.9058 0.9287 37 1 2.6276 3.7952 0.9288 38 1 3.1457 2.9129 3.5610 39 1 3.4217 5.1719 5.0047 40 1 4.9632 4.2820 5.0048 41 1 7.0448 9.6659 6.1865 42 1 2.0502 -2.9499 2.0979 43 1 0.5681 -3.8959 1.5415 44 1 0.9449 -5.5845 -0.2305 45 1 3.5902 -5.2450 -1.8809 46 1 2.4878 -6.7235 -1.8911 47 1 0.5689 -5.2875 -2.7214 48 1 1.6706 -3.8086 -2.7113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720447082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = -28.712185 kcal Electronic energy + Delta-G solvation = -25657.454962 eV Core-core repulsion = 21840.167426 eV Total energy + Delta-G solvation = -3817.287536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67909 -39.15932 -38.50140 -36.53417 -35.36029 -34.93254 -32.41370 -32.01070 -29.31811 -27.29830 -26.56717 -25.45981 -24.38863 -23.51485 -22.82239 -21.95602 -20.60019 -20.23606 -19.24589 -17.83859 -17.77855 -16.78268 -16.29477 -16.15047 -15.85238 -15.61005 -15.53870 -15.07473 -14.78882 -14.52962 -14.31532 -13.89644 -13.70338 -13.42366 -13.10504 -13.02285 -12.78358 -12.73838 -12.56729 -12.37727 -12.09362 -11.88054 -11.84091 -11.76956 -11.42233 -11.36764 -11.06324 -11.02925 -11.01969 -10.75717 -10.53601 -10.24005 -10.04474 -9.81013 -9.43533 -9.08668 -9.04774 -8.86005 -8.22061 -6.48159 -6.19830 -3.90447 2.08841 2.46100 3.07406 3.13002 3.13612 3.24721 3.28874 3.33257 3.48950 3.75335 3.94100 4.14312 4.22190 4.25901 4.42543 4.52067 4.57391 4.64651 4.68375 4.77161 4.79318 4.84332 4.96272 5.03742 5.14199 5.15237 5.18660 5.20326 5.21725 5.22663 5.34890 5.41886 5.46334 5.57041 5.63292 5.67094 5.67758 5.80710 5.84668 5.93031 5.96512 6.10392 6.16035 6.63872 6.92749 7.60792 7.73261 7.79553 8.36657 8.64092 9.25236 10.87574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.001470 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.068676 B =19047.118294 C =19438.717297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.118 3.882 4 C -0.145 4.145 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.542 3.458 20 O -0.534 6.534 21 C -0.188 4.188 22 H 0.126 0.874 23 C -0.142 4.142 24 C -0.090 4.090 25 H 0.120 0.880 26 C -0.129 4.129 27 C -0.173 4.173 28 C -0.177 4.177 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.641 -28.936 -13.876 36.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.005 4.005 4 C -0.184 4.184 5 C 0.000 4.000 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.330 3.670 20 O -0.410 6.410 21 C -0.209 4.209 22 H 0.143 0.857 23 C -0.179 4.179 24 C -0.108 4.108 25 H 0.138 0.862 26 C -0.147 4.147 27 C -0.210 4.210 28 C -0.214 4.214 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.237 -27.594 -15.473 35.560 hybrid contribution -0.742 -0.780 2.623 2.835 sum -16.979 -28.374 -12.850 35.476 Atomic orbital electron populations 1.21869 0.79169 1.03299 1.02224 1.47763 1.07176 1.05868 1.73834 1.21412 0.98333 0.84176 0.96586 1.22124 1.01051 0.97266 0.97912 1.21135 1.00138 0.94687 0.84067 1.45975 1.60361 1.24948 1.08072 1.20307 0.76719 0.79925 0.91329 1.90700 1.49301 1.53119 1.46086 1.23531 1.05382 1.06389 0.95104 1.85393 1.70519 1.17686 1.09746 1.22834 1.43073 1.11023 0.91547 0.90988 1.24986 0.94645 0.94906 0.98993 1.70011 1.34836 1.11008 1.34446 0.86226 0.78420 0.77713 0.83141 1.19943 1.20797 1.19959 1.19724 0.87337 0.84389 0.75537 1.90726 1.13814 1.87171 1.49333 1.22350 1.02527 0.90297 1.05696 0.85673 1.23061 1.02922 1.00893 0.91044 1.21848 0.98896 0.91254 0.98842 0.86241 1.21778 1.03100 0.98629 0.91180 1.22999 0.95968 0.98836 1.03221 1.22980 1.00557 1.01964 0.95914 0.92304 0.90842 0.90767 0.89317 0.89904 0.91141 0.90860 0.91411 0.91530 0.76879 0.89249 0.89227 0.92135 0.88056 0.87628 0.87338 0.88487 0.88639 0.88737 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 10.31 59.85 0.62 0.93 16 2 N -0.61 -4.60 2.87 -181.57 -0.52 -5.12 16 3 C 0.12 0.96 5.45 -4.04 -0.02 0.94 16 4 C -0.14 -1.27 5.65 -26.73 -0.15 -1.42 16 5 C 0.12 1.48 5.67 -4.05 -0.02 1.45 16 6 N -0.74 -10.22 5.56 -60.30 -0.33 -10.56 16 7 C 0.53 10.21 7.85 -10.99 -0.09 10.12 16 8 O -0.52 -12.08 15.86 5.56 0.09 -11.99 16 9 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 15 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.54 5.15 7.46 -10.98 -0.08 5.06 16 20 O -0.53 -7.26 15.84 5.56 0.09 -7.18 16 21 C -0.19 -1.22 4.93 -91.77 -0.45 -1.67 16 22 H 0.13 0.57 6.44 -51.93 -0.33 0.24 16 23 C -0.14 -0.81 9.96 -26.69 -0.27 -1.07 16 24 C -0.09 -0.61 5.38 -90.58 -0.49 -1.10 16 25 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 26 C -0.13 -0.69 5.87 -90.61 -0.53 -1.22 16 27 C -0.17 -0.93 10.25 -26.73 -0.27 -1.21 16 28 C -0.18 -0.91 10.18 -26.73 -0.27 -1.18 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.20 6.00 -51.93 -0.31 -0.11 16 31 H 0.07 0.23 7.89 -51.93 -0.41 -0.18 16 32 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 33 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 416.79 15.07 6.28 6.28 Total: -1.00 -37.12 416.79 -10.57 -47.69 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.06 Total: 0.31 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.61 Total: -6.44 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.12 Total: -41.34 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.12 -10.57 -47.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720447082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.977 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds