Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 5 5 O 1.21279 * 119.99753 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.00154 * 0.02562 * 4 3 2 7 7 S 1.80999 * 109.47336 * 180.02562 * 6 4 3 8 8 C 1.76203 * 100.00184 * 179.97438 * 7 6 4 9 9 H 1.07992 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.38802 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31627 * 120.00014 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99665 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47249 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46888 * 120.00291 * 12 10 8 15 15 H 1.48501 * 109.47246 * 239.99821 * 12 10 8 16 16 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 17 17 H 1.08997 * 110.88456 * 357.57667 * 16 3 2 18 18 C 1.55157 * 111.00176 * 121.45163 * 16 3 2 19 19 C 1.54322 * 102.94194 * 153.57881 * 18 16 3 20 20 N 1.47018 * 107.26951 * 337.80612 * 19 18 16 21 21 C 1.34774 * 125.64806 * 178.96509 * 20 19 18 22 22 O 1.21282 * 120.00122 * 179.97438 * 21 20 19 23 23 C 1.50698 * 120.00295 * 359.97432 * 21 20 19 24 24 C 1.53788 * 113.61440 * 277.50323 * 23 21 20 25 25 C 1.53776 * 87.07926 * 220.01829 * 24 23 21 26 26 C 1.53775 * 113.61764 * 180.02562 * 23 21 20 27 27 C 1.47429 * 108.70515 * 358.94141 * 20 19 18 28 28 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 33 33 H 1.09001 * 109.47525 * 300.00358 * 6 4 3 34 34 H 1.09002 * 109.47555 * 59.99795 * 6 4 3 35 35 H 0.97005 * 119.99965 * 179.97438 * 11 10 8 36 36 H 1.09006 * 110.71918 * 271.93955 * 18 16 3 37 37 H 1.09000 * 110.72330 * 35.03259 * 18 16 3 38 38 H 1.08999 * 109.88427 * 97.22722 * 19 18 16 39 39 H 1.09003 * 109.87953 * 218.38836 * 19 18 16 40 40 H 1.08997 * 112.84964 * 48.80288 * 23 21 20 41 41 H 1.09003 * 113.61019 * 334.55827 * 24 23 21 42 42 H 1.08994 * 113.61870 * 105.46138 * 24 23 21 43 43 H 1.09008 * 113.61319 * 270.88248 * 25 24 23 44 44 H 1.09002 * 113.61767 * 139.97980 * 25 24 23 45 45 H 1.09005 * 113.61549 * 254.52823 * 26 23 21 46 46 H 1.08999 * 113.61788 * 25.34890 * 26 23 21 47 47 H 1.09004 * 110.36484 * 265.28973 * 27 20 19 48 48 H 1.08997 * 110.36704 * 142.96809 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6469 3.1600 1.1673 6 6 1.9924 1.3059 2.4723 7 16 2.3836 2.4150 3.8481 8 6 2.0103 1.3589 5.2082 9 1 1.6560 0.3544 5.0305 10 6 2.1725 1.8179 6.5081 11 7 2.6048 3.0421 6.7247 12 14 1.7760 0.6985 7.9500 13 1 1.3110 -0.6172 7.4421 14 1 2.9943 0.5067 8.7774 15 1 0.7082 1.3159 8.7770 16 6 2.2626 2.0718 -1.2687 17 1 2.0742 1.4099 -2.1140 18 6 1.4085 3.3630 -1.3724 19 6 2.2375 4.2502 -2.3249 20 7 3.6252 3.7673 -2.2741 21 6 4.6574 4.2678 -2.9815 22 8 5.7650 3.7890 -2.8594 23 6 4.4354 5.4225 -3.9240 24 6 3.8924 4.9995 -5.2993 25 6 4.8365 6.0499 -5.9076 26 6 5.7105 5.8751 -4.6548 27 6 3.7007 2.6451 -1.3209 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 0.9446 1.0113 2.5303 34 1 2.6228 0.4186 2.5299 35 1 2.7178 3.3630 7.6332 36 1 0.4306 3.1450 -1.8017 37 1 1.3028 3.8349 -0.3955 38 1 1.8520 4.1644 -3.3408 39 1 2.1940 5.2885 -1.9961 40 1 3.8799 6.2413 -3.4669 41 1 4.1454 3.9750 -5.5723 42 1 2.8360 5.2277 -5.4407 43 1 4.3899 7.0406 -5.9938 44 1 5.3209 5.7214 -6.8271 45 1 6.1223 6.8105 -4.2759 46 1 6.4609 5.0903 -4.7505 47 1 4.0024 3.0032 -0.3366 48 1 4.3980 1.8883 -1.6804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721428725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -44.309307 kcal Electronic energy + Delta-G solvation = -27785.936341 eV Core-core repulsion = 23967.972463 eV Total energy + Delta-G solvation = -3817.963878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80351 -39.88425 -37.93149 -36.77522 -35.63396 -32.44905 -31.96255 -30.11286 -29.54761 -28.37123 -26.52018 -25.90305 -25.48648 -23.60229 -23.35271 -21.82044 -20.40208 -19.11827 -18.94120 -17.74893 -17.44888 -16.89304 -16.38699 -15.86012 -15.73832 -15.14749 -15.01028 -14.82173 -14.30663 -13.97025 -13.81219 -13.79285 -13.48564 -13.39603 -13.09263 -12.85273 -12.75410 -12.69148 -12.52008 -12.25278 -12.11237 -12.06316 -11.57041 -11.43450 -11.34061 -11.32845 -11.09132 -11.04516 -10.94862 -10.80698 -10.76764 -10.68878 -9.82156 -9.75921 -9.27982 -9.09264 -8.82484 -8.45312 -8.24673 -6.52232 -6.23746 -3.94314 2.54830 2.62641 2.92880 3.06607 3.20053 3.25472 3.29819 3.56559 4.18082 4.19153 4.27067 4.31878 4.46420 4.51026 4.54792 4.65319 4.85484 4.87724 4.96219 5.09237 5.11236 5.13147 5.16599 5.26831 5.30513 5.33548 5.44217 5.48079 5.50861 5.54500 5.60258 5.68543 5.68739 5.72489 5.78839 5.83209 5.88192 6.00789 6.02363 6.05661 6.10063 6.18835 6.21495 6.69335 7.43853 7.46495 7.58036 8.11722 8.33365 8.47490 9.21857 10.83681 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002450 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.290855 B =11423.696104 C =12369.810054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.613 5.613 4 C 0.535 3.465 5 O -0.507 6.507 6 C -0.151 4.151 7 S -0.061 6.061 8 C -0.534 4.534 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.142 3.858 17 H 0.099 0.901 18 C -0.147 4.147 19 C 0.109 3.891 20 N -0.611 5.611 21 C 0.537 3.463 22 O -0.542 6.542 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.119 4.119 27 C 0.088 3.912 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -0.682 -24.997 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.348 5.348 4 C 0.324 3.676 5 O -0.381 6.381 6 C -0.302 4.302 7 S 0.166 5.834 8 C -0.682 4.682 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.036 3.964 17 H 0.117 0.883 18 C -0.186 4.186 19 C -0.014 4.014 20 N -0.345 5.345 21 C 0.326 3.674 22 O -0.419 6.419 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.157 4.157 27 C -0.036 4.036 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.571 0.915 -24.829 24.978 hybrid contribution -0.948 -2.101 1.077 2.544 sum -3.519 -1.186 -23.752 24.041 Atomic orbital electron populations 1.22229 0.95804 1.02257 1.02748 1.21593 0.94574 0.82041 1.03437 1.47911 1.67659 1.14392 1.04838 1.20355 0.76287 0.86539 0.84437 1.90661 1.43342 1.17374 1.86705 1.23602 1.04790 1.04588 0.97207 1.85400 1.86919 1.17762 0.93359 1.22885 1.51696 1.01478 0.92169 0.90909 1.24994 0.94667 0.95544 0.98402 1.70025 1.42999 1.15629 1.21578 0.86125 0.78192 0.80077 0.81149 1.19612 1.20560 1.20569 1.22026 0.94361 0.93649 0.86327 0.88325 1.23073 0.97960 0.95665 1.01876 1.21958 0.81119 0.98920 0.99442 1.48325 1.08920 1.34629 1.42636 1.20174 0.83134 0.84093 0.80000 1.90694 1.23355 1.61397 1.66444 1.22771 1.01126 0.97078 0.94581 1.22805 0.99769 0.99983 0.93418 1.22823 0.97870 0.99260 0.97930 1.22812 0.95782 1.02197 0.94868 1.22708 0.96721 0.88931 0.95191 0.92504 0.91829 0.91544 0.89688 0.90556 0.89195 0.89287 0.92229 0.90164 0.88115 0.91457 0.91126 0.87004 0.89784 0.90731 0.89852 0.90993 0.90953 0.88702 0.88259 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.11 1.04 5.92 -4.04 -0.02 1.01 16 3 N -0.61 -7.88 2.56 -163.68 -0.42 -8.30 16 4 C 0.54 9.43 6.97 -10.99 -0.08 9.35 16 5 O -0.51 -10.57 11.90 5.56 0.07 -10.51 16 6 C -0.15 -2.95 4.71 36.00 0.17 -2.78 16 7 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 8 C -0.53 -14.98 9.50 30.94 0.29 -14.69 16 9 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 10 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 11 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 12 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.14 1.61 3.55 -65.79 -0.23 1.37 16 17 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 18 C -0.15 -1.58 6.32 -24.90 -0.16 -1.74 16 19 C 0.11 1.07 6.45 -3.07 -0.02 1.05 16 20 N -0.61 -7.82 3.33 -170.52 -0.57 -8.38 16 21 C 0.54 7.32 7.37 -10.99 -0.08 7.24 16 22 O -0.54 -9.52 16.15 5.56 0.09 -9.43 16 23 C -0.13 -1.29 3.36 -90.96 -0.31 -1.59 16 24 C -0.12 -0.89 7.63 -25.92 -0.20 -1.08 16 25 C -0.14 -0.94 8.08 -25.94 -0.21 -1.15 16 26 C -0.12 -1.08 7.40 -25.94 -0.19 -1.28 16 27 C 0.09 1.25 6.26 -2.53 -0.02 1.23 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.68 7.22 -51.93 -0.38 0.31 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 33 H 0.09 1.62 7.19 -51.91 -0.37 1.25 16 34 H 0.09 1.63 7.40 -51.92 -0.38 1.24 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.43 6.13 -51.93 -0.32 1.12 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.02 7.43 -51.93 -0.39 0.64 16 47 H 0.10 1.80 5.66 -51.93 -0.29 1.50 16 48 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -35.19 394.77 -10.04 -45.23 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.89 Total: 0.50 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.77 Total: -2.20 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.25 Total: -41.93 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.16 Total: -19.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.19 -10.04 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721428725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.924 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds