Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46985 * 2 1 4 4 C 1.34769 * 120.00301 * 275.92857 * 3 2 1 5 5 O 1.21284 * 120.00031 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.00073 * 359.97438 * 4 3 2 7 7 H 1.08998 * 115.54658 * 34.41910 * 6 4 3 8 8 C 1.52994 * 117.49926 * 248.74976 * 6 4 3 9 9 C 1.52999 * 117.49718 * 180.08985 * 6 4 3 10 10 H 1.09000 * 117.50451 * 0.02562 * 9 6 4 11 11 C 1.53002 * 117.49793 * 214.98155 * 9 6 4 12 12 C 1.46506 * 119.99719 * 95.92197 * 3 2 1 13 13 H 1.08996 * 110.64211 * 188.65289 * 12 3 2 14 14 C 1.55160 * 110.72346 * 311.99071 * 12 3 2 15 15 C 1.54907 * 101.58245 * 153.86359 * 14 12 3 16 16 N 1.47432 * 104.83195 * 322.98767 * 15 14 12 17 17 C 1.34771 * 125.64824 * 204.16434 * 16 15 14 18 18 O 1.21279 * 120.00201 * 179.97438 * 17 16 15 19 19 C 1.50701 * 120.00276 * 359.96005 * 17 16 15 20 20 S 1.80998 * 109.47626 * 180.02562 * 19 17 16 21 21 C 1.76191 * 100.00276 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00367 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00096 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99600 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99925 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46849 * 60.00385 * 25 23 21 27 27 H 1.48500 * 109.46822 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47376 * 300.00294 * 25 23 21 29 29 C 1.47026 * 108.70196 * 24.13071 * 16 15 14 30 30 H 1.09004 * 109.46915 * 174.85999 * 1 2 3 31 31 H 1.08991 * 109.47577 * 294.86230 * 1 2 3 32 32 H 1.09006 * 109.47356 * 54.86470 * 1 2 3 33 33 H 1.08997 * 109.47051 * 120.00028 * 2 1 3 34 34 H 1.09003 * 109.47076 * 240.00670 * 2 1 3 35 35 H 1.09007 * 117.50148 * 359.97438 * 8 6 4 36 36 H 1.09004 * 117.50064 * 144.99556 * 8 6 4 37 37 H 1.09003 * 109.47312 * 59.99761 * 11 9 6 38 38 H 1.08995 * 109.47399 * 179.97438 * 11 9 6 39 39 H 1.09006 * 109.46715 * 300.00000 * 11 9 6 40 40 H 1.09001 * 110.99928 * 271.93885 * 14 12 3 41 41 H 1.09002 * 110.99831 * 35.78785 * 14 12 3 42 42 H 1.08998 * 110.36794 * 204.15387 * 15 14 12 43 43 H 1.08996 * 110.36765 * 81.82959 * 15 14 12 44 44 H 1.09000 * 109.47089 * 300.00507 * 19 17 16 45 45 H 1.09004 * 109.46951 * 59.99438 * 19 17 16 46 46 H 0.97000 * 119.99873 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.88077 * 239.52308 * 29 16 15 48 48 H 1.09001 * 110.00943 * 118.42573 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1292 2.0568 -1.1609 5 8 2.5331 3.2004 -1.1608 6 6 1.7516 1.3912 -2.4591 7 1 0.9179 0.6913 -2.4033 8 6 2.8788 1.0705 -3.4426 9 6 1.9019 2.2101 -3.7427 10 1 2.2744 3.2302 -3.6483 11 6 0.8708 1.9835 -4.8501 12 6 2.3858 2.0282 1.2620 13 1 2.5804 3.0895 1.1074 14 6 1.2790 1.8188 2.3291 15 6 2.0904 1.9271 3.6442 16 7 3.3814 1.2807 3.3455 17 6 4.2128 0.7306 4.2524 18 8 5.2537 0.2235 3.8917 19 6 3.8493 0.7460 5.7148 20 16 5.1574 -0.0615 6.6703 21 6 4.4908 0.0938 8.2938 22 1 3.5378 0.5800 8.4422 23 6 5.1903 -0.4088 9.3823 24 7 6.3514 -1.0017 9.2015 25 14 4.4839 -0.2435 11.1036 26 1 3.1722 -0.9369 11.1690 27 1 5.4169 -0.8571 12.0825 28 1 4.3006 1.1940 11.4276 29 6 3.6111 1.3349 1.8943 30 1 -0.3633 -1.0236 -0.0921 31 1 -0.3634 0.4320 0.9323 32 1 -0.3634 0.5915 -0.8405 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 3.8936 1.3412 -3.1509 36 1 2.7867 0.1594 -4.0340 37 1 -0.1247 2.2186 -4.4734 38 1 1.1000 2.6293 -5.6977 39 1 0.9022 0.9413 -5.1680 40 1 0.5252 2.6039 2.2693 41 1 0.8234 0.8335 2.2311 42 1 1.5795 1.3996 4.4497 43 1 2.2425 2.9729 3.9111 44 1 3.7380 1.7769 6.0508 45 1 2.9099 0.2128 5.8613 46 1 6.8405 -1.3526 9.9621 47 1 3.7116 0.3249 1.4970 48 1 4.5129 1.9086 1.6806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721441078.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -64.637341 kcal Electronic energy + Delta-G solvation = -27274.059184 eV Core-core repulsion = 23455.213817 eV Total energy + Delta-G solvation = -3818.845368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79240 -40.78317 -38.94288 -37.60585 -36.62884 -34.59066 -32.86180 -31.41492 -30.92307 -29.83545 -28.91286 -27.66180 -25.58715 -24.78702 -23.84818 -22.20110 -21.39418 -20.80316 -19.90033 -19.62129 -18.72487 -18.18086 -17.59948 -17.01263 -16.88318 -16.60212 -16.30368 -15.76522 -15.53110 -15.45529 -15.03957 -14.69234 -14.52236 -14.47488 -14.15187 -14.02101 -13.86650 -13.72533 -13.57613 -13.37912 -13.17491 -13.09005 -12.89350 -12.86303 -12.74012 -12.64325 -12.50623 -12.30694 -12.01073 -11.79159 -11.70290 -11.34575 -11.13067 -11.06655 -11.02954 -10.81289 -10.29527 -9.86154 -9.78911 -8.69145 -8.34760 -6.13874 1.18420 1.36083 1.42375 1.44240 1.50079 1.53782 1.72727 2.13469 2.26993 2.82321 2.99407 3.19121 3.30284 3.42798 3.54244 3.76946 3.83092 3.86210 3.91649 3.98140 4.06741 4.13929 4.20905 4.25022 4.36727 4.41974 4.42182 4.48355 4.59985 4.66886 4.69656 4.74935 4.83487 4.85833 4.88979 4.94437 4.97273 5.03565 5.08303 5.20418 5.22141 5.41147 5.41281 5.41463 5.50874 6.19231 6.28008 6.28968 7.03565 7.05889 7.06241 8.74279 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.001981 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.935531 B =14133.022878 C =14401.127308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.541 3.459 5 O -0.584 6.584 6 C -0.192 4.192 7 H 0.152 0.848 8 C -0.142 4.142 9 C -0.128 4.128 10 H 0.091 0.909 11 C -0.118 4.118 12 C 0.138 3.862 13 H 0.103 0.897 14 C -0.128 4.128 15 C 0.092 3.908 16 N -0.614 5.614 17 C 0.547 3.453 18 O -0.567 6.567 19 C -0.118 4.118 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.262 1.262 29 C 0.101 3.899 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.271 0.729 47 H 0.067 0.933 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.873 3.919 -25.627 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.326 5.326 4 C 0.332 3.668 5 O -0.464 6.464 6 C -0.213 4.213 7 H 0.170 0.830 8 C -0.179 4.179 9 C -0.147 4.147 10 H 0.109 0.891 11 C -0.175 4.175 12 C 0.033 3.967 13 H 0.121 0.879 14 C -0.166 4.166 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.336 3.664 18 O -0.446 6.446 19 C -0.269 4.269 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.187 1.187 29 C -0.023 4.023 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.943 3.638 -26.036 31.829 hybrid contribution -0.628 0.661 1.671 1.904 sum -18.572 4.299 -24.365 30.936 Atomic orbital electron populations 1.22340 0.93764 1.03753 1.03034 1.21823 0.95961 0.80486 1.04366 1.47889 1.64440 1.15174 1.05062 1.20309 0.75846 0.85253 0.85435 1.90678 1.48363 1.19921 1.87465 1.22451 1.04950 1.06025 0.87830 0.83042 1.23209 0.93872 1.01027 0.99832 1.22423 1.01016 0.96651 0.94628 0.89091 1.21393 0.97052 1.02982 0.96080 1.21900 0.93262 0.97782 0.83754 0.87948 1.23273 0.96824 1.05519 0.91015 1.22678 0.81939 0.99022 0.99386 1.48328 1.22096 1.58130 1.06408 1.19856 0.82568 0.76874 0.87134 1.90694 1.26104 1.46475 1.81286 1.23297 1.04422 1.05874 0.93353 1.85628 1.28296 1.75941 1.02625 1.23162 1.09385 1.44750 0.92099 0.89727 1.26145 0.94942 0.93752 1.04305 1.70180 1.14548 1.36868 1.33182 0.84993 0.78275 0.79120 0.75543 1.18456 1.20461 1.18691 1.22204 0.98678 1.01161 0.80280 0.89597 0.91722 0.91903 0.90160 0.88571 0.89921 0.84998 0.91606 0.91324 0.90720 0.86889 0.88138 0.88385 0.89608 0.87458 0.86943 0.91986 0.91421 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.67 71.98 0.70 -0.46 16 2 C 0.10 1.02 4.65 86.38 0.40 1.42 16 3 N -0.59 -9.84 2.48 -791.24 -1.97 -11.81 16 4 C 0.54 10.85 7.41 87.66 0.65 11.50 16 5 O -0.58 -16.79 15.65 -3.04 -0.05 -16.84 16 6 C -0.19 -2.47 4.45 -11.54 -0.05 -2.53 16 7 H 0.15 1.13 6.05 -2.39 -0.01 1.11 16 8 C -0.14 -1.65 9.88 30.62 0.30 -1.35 16 9 C -0.13 -1.69 5.92 -10.77 -0.06 -1.75 16 10 H 0.09 1.68 7.67 -2.39 -0.02 1.66 16 11 C -0.12 -0.90 10.19 71.98 0.73 -0.17 16 12 C 0.14 2.63 3.31 46.18 0.15 2.79 16 13 H 0.10 2.31 7.04 -2.39 -0.02 2.29 16 14 C -0.13 -1.71 6.07 31.99 0.19 -1.52 16 15 C 0.09 1.67 6.69 86.85 0.58 2.25 16 16 N -0.61 -17.32 3.33 -811.78 -2.70 -20.02 16 17 C 0.55 21.40 7.87 87.66 0.69 22.09 16 18 O -0.57 -27.77 16.19 -3.03 -0.05 -27.82 16 19 C -0.12 -4.78 5.16 71.24 0.37 -4.41 16 20 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 21 C -0.55 -31.10 9.50 67.96 0.65 -30.45 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 25 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 29 C 0.10 2.60 6.40 86.73 0.55 3.15 16 30 H 0.09 0.35 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.47 6.04 -2.39 -0.01 0.46 16 32 H 0.06 0.41 6.90 -2.38 -0.02 0.39 16 33 H 0.08 1.00 6.68 -2.39 -0.02 0.99 16 34 H 0.10 0.78 6.99 -2.39 -0.02 0.76 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.13 0.83 8.05 -2.38 -0.02 0.81 16 37 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.35 7.90 -2.38 -0.02 0.33 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.14 5.06 -2.39 -0.01 1.12 16 42 H 0.10 1.58 7.47 -2.39 -0.02 1.57 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.11 4.00 7.85 -2.39 -0.02 3.98 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.07 1.79 6.90 -2.39 -0.02 1.77 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -82.89 396.83 3.67 -79.23 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.96 Total: 15.64 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.32 Total: 1.80 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -4.38 Total: -87.64 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.10 Total: -44.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -82.89 3.67 -79.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721441078.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal (2) G-P(sol) polarization free energy of solvation -82.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds