Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99658 * 2 1 4 4 O 1.21284 * 119.99702 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00466 * 0.02562 * 3 2 1 6 6 S 1.80998 * 109.47471 * 179.97438 * 5 3 2 7 7 C 1.76191 * 100.00091 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00410 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46875 * 120.00396 * 11 9 7 14 14 H 1.48504 * 109.46918 * 239.99943 * 11 9 7 15 15 C 1.46500 * 120.00026 * 179.97438 * 2 1 3 16 16 C 1.53936 * 113.83039 * 321.33224 * 15 2 1 17 17 N 1.47963 * 86.18081 * 90.64735 * 16 15 2 18 18 C 1.46905 * 110.99442 * 137.58205 * 17 16 15 19 19 C 1.52998 * 109.47132 * 70.64344 * 18 17 16 20 20 H 1.08997 * 115.56210 * 330.61167 * 19 18 17 21 21 C 1.53178 * 117.52262 * 116.38676 * 19 18 17 22 22 C 1.52103 * 117.52189 * 184.75353 * 19 18 17 23 23 C 1.53715 * 121.73669 * 3.67805 * 22 19 18 24 24 C 1.54691 * 103.69793 * 143.46730 * 23 22 19 25 25 O 1.44501 * 104.86901 * 23.84353 * 24 23 22 26 26 C 1.44634 * 105.46291 * 320.02274 * 25 24 23 27 27 C 1.47962 * 90.76258 * 24.69072 * 17 16 15 28 28 H 1.09000 * 109.47551 * 269.99955 * 1 2 3 29 29 H 1.09000 * 109.46760 * 30.00475 * 1 2 3 30 30 H 1.09007 * 109.46709 * 149.99699 * 1 2 3 31 31 H 1.09006 * 109.46734 * 299.99805 * 5 3 2 32 32 H 1.09002 * 109.47160 * 59.99442 * 5 3 2 33 33 H 0.97004 * 119.99305 * 180.02562 * 10 9 7 34 34 H 1.09002 * 112.93917 * 189.67053 * 15 2 1 35 35 H 1.09003 * 113.75649 * 204.96870 * 16 15 2 36 36 H 1.09007 * 113.75829 * 336.32990 * 16 15 2 37 37 H 1.08998 * 109.46445 * 190.64141 * 18 17 16 38 38 H 1.09000 * 109.47062 * 310.63837 * 18 17 16 39 39 H 1.08994 * 117.52446 * 214.84286 * 21 19 18 40 40 H 1.09002 * 117.52437 * 0.02562 * 21 19 18 41 41 H 1.09004 * 110.57999 * 262.01947 * 23 22 19 42 42 H 1.08996 * 110.58079 * 24.90872 * 23 22 19 43 43 H 1.09000 * 110.36266 * 142.69408 * 24 23 22 44 44 H 1.09005 * 110.36096 * 264.99906 * 24 23 22 45 45 H 1.08997 * 110.42020 * 280.87966 * 26 25 24 46 46 H 1.09005 * 110.41847 * 158.41674 * 26 25 24 47 47 H 1.08991 * 113.75516 * 220.99362 * 27 17 16 48 48 H 1.08998 * 113.86153 * 89.63735 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3761 5.0305 0.0002 9 6 1.9282 6.5081 0.0019 10 7 3.2265 6.7247 0.0024 11 14 0.7406 7.9501 0.0010 12 1 -0.6548 7.4421 -0.0013 13 1 0.9651 8.7768 1.2139 14 1 0.9677 8.7775 -1.2110 15 6 2.1975 -1.2687 0.0006 16 6 1.5564 -2.3567 0.8809 17 7 0.8108 -2.7593 -0.3321 18 6 0.7704 -4.2219 -0.4638 19 6 -0.1449 -4.8059 0.6142 20 1 -0.2059 -4.2337 1.5399 21 6 -1.4078 -5.5379 0.1500 22 6 -0.2330 -6.3209 0.7161 23 6 0.6247 -7.2420 -0.1665 24 6 0.9738 -8.4240 0.7684 25 8 -0.0712 -8.4286 1.7663 26 6 -0.3174 -7.0369 2.0733 27 6 1.8625 -2.1780 -1.1955 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 0.7584 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.5666 7.6331 0.0034 34 1 3.2669 -1.1418 0.1691 35 1 2.2621 -3.1092 1.2327 36 1 0.9226 -1.9619 1.6751 37 1 0.3869 -4.4874 -1.4490 38 1 1.7759 -4.6254 -0.3445 39 1 -2.2991 -5.4479 0.7708 40 1 -1.5862 -5.6036 -0.9234 41 1 0.0527 -7.5899 -1.0267 42 1 1.5302 -6.7285 -0.4896 43 1 0.9711 -9.3612 0.2119 44 1 1.9448 -8.2630 1.2368 45 1 0.4458 -6.6564 2.7521 46 1 -1.3096 -6.9130 2.5074 47 1 1.4733 -1.6407 -2.0602 48 1 2.6585 -2.8771 -1.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723734708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -6.447734 kcal Electronic energy + Delta-G solvation = -26816.778593 eV Core-core repulsion = 23000.456517 eV Total energy + Delta-G solvation = -3816.322077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00195 -40.19419 -38.58328 -36.81634 -34.57028 -32.42505 -31.01670 -30.57355 -28.82206 -27.51539 -26.74689 -26.44376 -25.49523 -24.26074 -23.27395 -21.46927 -20.72248 -19.51154 -18.60741 -17.72102 -17.04306 -16.80051 -16.60155 -16.07214 -15.70973 -15.63999 -15.44538 -15.02756 -14.80636 -14.78646 -14.31572 -13.80461 -13.40144 -13.34949 -13.20294 -13.01105 -12.82034 -12.60834 -12.47705 -12.26564 -12.12647 -12.01048 -11.92288 -11.73824 -11.45204 -11.17822 -11.10329 -11.06672 -11.00969 -10.74208 -10.51750 -10.26146 -10.06812 -9.79133 -9.41391 -9.07008 -9.04685 -8.49397 -8.21658 -6.49665 -6.21508 -3.91787 2.88929 3.01167 3.07463 3.21762 3.26159 3.31370 3.50454 3.56841 3.63750 3.86617 4.16947 4.20668 4.27554 4.38721 4.40364 4.60625 4.62278 4.78902 4.89436 4.95213 4.98895 5.05081 5.06588 5.13772 5.15315 5.19016 5.22361 5.26342 5.28222 5.35016 5.38413 5.42299 5.46398 5.52350 5.56936 5.62315 5.67022 5.77213 5.82755 5.91752 5.96886 6.00605 6.16166 6.28643 6.64616 6.72025 7.57312 7.60726 8.35920 8.55299 9.24056 10.85990 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.001743 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.283302 B =16060.631667 C =16428.288249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.535 3.465 4 O -0.518 6.518 5 C -0.148 4.148 6 S -0.063 6.063 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.122 3.878 16 C -0.007 4.007 17 N -0.472 5.472 18 C 0.051 3.949 19 C -0.122 4.122 20 H 0.111 0.889 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.121 4.121 24 C 0.047 3.953 25 O -0.375 6.375 26 C 0.082 3.918 27 C -0.011 4.011 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -29.245 0.152 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.323 3.677 4 O -0.392 6.392 5 C -0.298 4.298 6 S 0.164 5.836 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.015 3.985 16 C -0.137 4.137 17 N -0.194 5.194 18 C -0.077 4.077 19 C -0.140 4.140 20 H 0.129 0.871 21 C -0.186 4.186 22 C -0.166 4.166 23 C -0.158 4.158 24 C -0.030 4.030 25 O -0.293 6.293 26 C 0.005 3.995 27 C -0.140 4.140 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.893 -29.109 0.154 29.914 hybrid contribution -1.385 0.679 -0.024 1.542 sum -8.278 -28.430 0.130 29.611 Atomic orbital electron populations 1.21884 0.78984 1.03991 1.01774 1.47485 1.07029 1.04156 1.74873 1.20406 0.87912 0.84548 0.74839 1.90686 1.13812 1.86825 1.47914 1.23543 1.04485 0.96992 1.04816 1.85381 1.08144 0.93399 1.96705 1.22905 0.94356 0.92184 1.58779 0.90871 1.24996 0.95670 0.98383 0.94557 1.70031 1.11731 1.21535 1.46990 0.86118 0.80374 0.81122 0.77891 1.19600 1.20574 1.20578 1.22210 0.97955 0.83583 0.94716 1.24378 0.96879 0.97101 0.95351 1.68600 1.37470 1.09246 1.04112 1.22209 0.97785 0.89491 0.98218 1.22156 0.99454 0.91565 1.00824 0.87130 1.23047 0.92072 1.01989 1.01509 1.22314 1.02951 0.93488 0.97852 1.22380 0.99677 0.95436 0.98310 1.23430 0.91240 0.99048 0.89301 1.89170 1.56381 1.24306 1.59473 1.22796 1.01759 0.81009 0.93891 1.24464 0.93870 0.97319 0.98385 0.93258 0.91284 0.88935 0.89180 0.89219 0.92258 0.87193 0.90316 0.88815 0.90397 0.93628 0.88410 0.88410 0.90335 0.90213 0.89011 0.92154 0.91727 0.88988 0.88731 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.24 59.85 0.55 1.42 16 2 N -0.60 -8.45 3.09 -175.26 -0.54 -8.99 16 3 C 0.53 10.13 7.69 -10.99 -0.08 10.04 16 4 O -0.52 -11.71 15.34 5.55 0.09 -11.62 16 5 C -0.15 -3.02 4.71 36.00 0.17 -2.85 16 6 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 11 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.12 1.42 4.52 -69.62 -0.31 1.10 16 16 C -0.01 -0.06 6.37 -2.76 -0.02 -0.08 16 17 N -0.47 -3.95 4.41 -238.43 -1.05 -5.01 16 18 C 0.05 0.35 4.27 -3.82 -0.02 0.33 16 19 C -0.12 -0.79 5.63 -90.99 -0.51 -1.30 16 20 H 0.11 0.77 7.57 -51.93 -0.39 0.38 16 21 C -0.15 -0.93 9.94 -27.09 -0.27 -1.20 16 22 C -0.17 -1.04 2.50 -154.69 -0.39 -1.43 16 23 C -0.12 -0.68 6.50 -25.47 -0.17 -0.84 16 24 C 0.05 0.29 7.65 38.05 0.29 0.58 16 25 O -0.37 -3.30 11.65 -35.23 -0.41 -3.71 16 26 C 0.08 0.57 7.44 37.51 0.28 0.85 16 27 C -0.01 -0.10 7.38 -2.76 -0.02 -0.12 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 30 H 0.09 0.94 6.07 -51.93 -0.32 0.63 16 31 H 0.09 1.71 7.40 -51.91 -0.38 1.33 16 32 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.11 1.46 7.22 -51.93 -0.37 1.09 16 35 H 0.08 0.59 7.78 -51.93 -0.40 0.19 16 36 H 0.09 0.86 7.89 -51.93 -0.41 0.45 16 37 H 0.08 0.53 7.88 -51.93 -0.41 0.13 16 38 H 0.05 0.30 6.97 -51.93 -0.36 -0.07 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.59 8.04 -51.93 -0.42 0.17 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.40 6.90 -51.93 -0.36 0.04 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 0.61 7.80 -51.93 -0.40 0.20 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -34.03 395.29 -10.67 -44.71 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.91 Total: -1.94 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.30 Total: -6.44 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.86 Total: -39.41 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.33 Total: -15.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.03 -10.67 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723734708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.260 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds