Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99658 * 2 1 4 4 O 1.21284 * 119.99702 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00466 * 0.02562 * 3 2 1 6 6 S 1.80998 * 109.47471 * 179.97438 * 5 3 2 7 7 C 1.76191 * 100.00091 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00410 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46875 * 120.00396 * 11 9 7 14 14 H 1.48504 * 109.46918 * 239.99943 * 11 9 7 15 15 C 1.46500 * 120.00026 * 179.97438 * 2 1 3 16 16 C 1.53936 * 113.83039 * 321.33224 * 15 2 1 17 17 N 1.47963 * 86.18081 * 90.64735 * 16 15 2 18 18 C 1.46905 * 110.99442 * 137.58205 * 17 16 15 19 19 C 1.52998 * 109.47132 * 70.64344 * 18 17 16 20 20 H 1.08997 * 115.56210 * 330.61167 * 19 18 17 21 21 C 1.53178 * 117.52262 * 116.38676 * 19 18 17 22 22 C 1.52103 * 117.52189 * 184.75353 * 19 18 17 23 23 C 1.53715 * 121.73669 * 3.67805 * 22 19 18 24 24 C 1.54691 * 103.69793 * 143.46730 * 23 22 19 25 25 O 1.44501 * 104.86901 * 23.84353 * 24 23 22 26 26 C 1.44634 * 105.46291 * 320.02274 * 25 24 23 27 27 C 1.47962 * 90.76258 * 24.69072 * 17 16 15 28 28 H 1.09000 * 109.47551 * 269.99955 * 1 2 3 29 29 H 1.09000 * 109.46760 * 30.00475 * 1 2 3 30 30 H 1.09007 * 109.46709 * 149.99699 * 1 2 3 31 31 H 1.09006 * 109.46734 * 299.99805 * 5 3 2 32 32 H 1.09002 * 109.47160 * 59.99442 * 5 3 2 33 33 H 0.97004 * 119.99305 * 180.02562 * 10 9 7 34 34 H 1.09002 * 112.93917 * 189.67053 * 15 2 1 35 35 H 1.09003 * 113.75649 * 204.96870 * 16 15 2 36 36 H 1.09007 * 113.75829 * 336.32990 * 16 15 2 37 37 H 1.08998 * 109.46445 * 190.64141 * 18 17 16 38 38 H 1.09000 * 109.47062 * 310.63837 * 18 17 16 39 39 H 1.08994 * 117.52446 * 214.84286 * 21 19 18 40 40 H 1.09002 * 117.52437 * 0.02562 * 21 19 18 41 41 H 1.09004 * 110.57999 * 262.01947 * 23 22 19 42 42 H 1.08996 * 110.58079 * 24.90872 * 23 22 19 43 43 H 1.09000 * 110.36266 * 142.69408 * 24 23 22 44 44 H 1.09005 * 110.36096 * 264.99906 * 24 23 22 45 45 H 1.08997 * 110.42020 * 280.87966 * 26 25 24 46 46 H 1.09005 * 110.41847 * 158.41674 * 26 25 24 47 47 H 1.08991 * 113.75516 * 220.99362 * 27 17 16 48 48 H 1.08998 * 113.86153 * 89.63735 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3761 5.0305 0.0002 9 6 1.9282 6.5081 0.0019 10 7 3.2265 6.7247 0.0024 11 14 0.7406 7.9501 0.0010 12 1 -0.6548 7.4421 -0.0013 13 1 0.9651 8.7768 1.2139 14 1 0.9677 8.7775 -1.2110 15 6 2.1975 -1.2687 0.0006 16 6 1.5564 -2.3567 0.8809 17 7 0.8108 -2.7593 -0.3321 18 6 0.7704 -4.2219 -0.4638 19 6 -0.1449 -4.8059 0.6142 20 1 -0.2059 -4.2337 1.5399 21 6 -1.4078 -5.5379 0.1500 22 6 -0.2330 -6.3209 0.7161 23 6 0.6247 -7.2420 -0.1665 24 6 0.9738 -8.4240 0.7684 25 8 -0.0712 -8.4286 1.7663 26 6 -0.3174 -7.0369 2.0733 27 6 1.8625 -2.1780 -1.1955 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 0.7584 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.5666 7.6331 0.0034 34 1 3.2669 -1.1418 0.1691 35 1 2.2621 -3.1092 1.2327 36 1 0.9226 -1.9619 1.6751 37 1 0.3869 -4.4874 -1.4490 38 1 1.7759 -4.6254 -0.3445 39 1 -2.2991 -5.4479 0.7708 40 1 -1.5862 -5.6036 -0.9234 41 1 0.0527 -7.5899 -1.0267 42 1 1.5302 -6.7285 -0.4896 43 1 0.9711 -9.3612 0.2119 44 1 1.9448 -8.2630 1.2368 45 1 0.4458 -6.6564 2.7521 46 1 -1.3096 -6.9130 2.5074 47 1 1.4733 -1.6407 -2.0602 48 1 2.6585 -2.8771 -1.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723734708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -29.065677 kcal Electronic energy + Delta-G solvation = -26817.759381 eV Core-core repulsion = 23000.456517 eV Total energy + Delta-G solvation = -3817.302865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83567 -40.84293 -39.79889 -37.41404 -35.75777 -34.58259 -31.84204 -31.21552 -30.05579 -28.21112 -27.70978 -27.58151 -27.17588 -25.03604 -23.73390 -22.20568 -21.63798 -20.00862 -19.96201 -19.40890 -18.27308 -17.53150 -17.14974 -16.99330 -16.87721 -16.82361 -16.42182 -16.13926 -16.06818 -15.70121 -15.46993 -14.87975 -14.52733 -14.45882 -14.20135 -13.92874 -13.65201 -13.54646 -13.35731 -13.24059 -13.15994 -13.07103 -12.99036 -12.90597 -12.60178 -12.45550 -12.33385 -12.08158 -11.94833 -11.74087 -11.66151 -11.15533 -11.04213 -10.87657 -10.77236 -10.56033 -10.26409 -9.76365 -9.62586 -8.66967 -8.34601 -6.12653 1.25600 1.41718 1.45872 1.54415 1.57665 2.08351 2.27594 2.56322 2.90581 2.99649 3.07203 3.27042 3.32703 3.54980 3.71098 3.72214 3.78751 3.92378 3.96139 4.13889 4.21969 4.25747 4.29287 4.39518 4.44196 4.46388 4.50422 4.52646 4.61540 4.63519 4.69590 4.72254 4.76641 4.80275 4.82653 4.85439 4.91885 4.94384 5.03875 5.10866 5.12186 5.25095 5.34781 5.42474 5.63404 5.80452 6.00419 6.20321 6.31219 7.06834 7.13832 8.74901 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.001743 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.283302 B =16060.631667 C =16428.288249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.586 5.586 3 C 0.533 3.467 4 O -0.566 6.566 5 C -0.122 4.122 6 S -0.151 6.151 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.256 1.256 13 H -0.274 1.274 14 H -0.274 1.274 15 C 0.100 3.900 16 C 0.008 3.992 17 N -0.472 5.472 18 C 0.055 3.945 19 C -0.119 4.119 20 H 0.108 0.892 21 C -0.151 4.151 22 C -0.164 4.164 23 C -0.118 4.118 24 C 0.041 3.959 25 O -0.401 6.401 26 C 0.078 3.922 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -30.440 -0.046 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.319 5.319 3 C 0.321 3.679 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.076 5.924 7 C -0.693 4.693 8 H 0.100 0.900 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.821 3.179 12 H -0.180 1.180 13 H -0.199 1.199 14 H -0.199 1.199 15 C -0.005 4.005 16 C -0.121 4.121 17 N -0.195 5.195 18 C -0.073 4.073 19 C -0.138 4.138 20 H 0.126 0.874 21 C -0.188 4.188 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.035 4.035 25 O -0.320 6.320 26 C 0.001 3.999 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.180 -30.361 -0.045 31.718 hybrid contribution -0.716 0.870 0.046 1.128 sum -9.896 -29.491 0.000 31.107 Atomic orbital electron populations 1.22087 0.76891 1.04817 1.02967 1.47430 1.08207 1.03579 1.72647 1.20157 0.87253 0.85413 0.75121 1.90668 1.15609 1.87474 1.50675 1.23360 1.02684 0.94957 1.06297 1.85547 1.12614 0.97234 1.97018 1.23230 0.94634 0.92652 1.58798 0.89953 1.26130 0.97602 1.01669 0.93730 1.70191 1.14087 1.22415 1.48054 0.84903 0.78196 0.76745 0.78088 1.18010 1.19909 1.19917 1.22490 0.96911 0.83218 0.97863 1.24312 0.96776 0.95929 0.95092 1.68571 1.36919 1.10547 1.03464 1.22207 0.98377 0.88224 0.98531 1.22084 0.99561 0.91561 1.00575 0.87419 1.23107 0.92143 1.01764 1.01751 1.22305 1.03142 0.93388 0.97697 1.22386 0.99950 0.95104 0.98098 1.23593 0.90937 0.99890 0.89127 1.89140 1.57246 1.25379 1.60277 1.22887 1.02121 0.80467 0.94396 1.24388 0.94555 0.96814 0.97142 0.91813 0.91299 0.87291 0.87513 0.87623 0.91992 0.89392 0.88602 0.88764 0.90018 0.92788 0.88182 0.88127 0.90068 0.89326 0.88072 0.91563 0.91358 0.88696 0.89469 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 9.24 127.77 1.18 2.67 16 2 N -0.59 -15.82 3.09 -826.80 -2.56 -18.38 16 3 C 0.53 20.27 7.69 87.66 0.67 20.94 16 4 O -0.57 -26.48 15.34 -3.04 -0.05 -26.52 16 5 C -0.12 -4.95 4.71 71.24 0.34 -4.62 16 6 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 7 C -0.55 -31.28 9.50 67.96 0.65 -30.64 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 11 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.10 2.22 4.52 46.56 0.21 2.43 16 16 C 0.01 0.13 6.37 86.41 0.55 0.68 16 17 N -0.47 -6.59 4.41 -908.25 -4.01 -10.60 16 18 C 0.05 0.58 4.27 86.30 0.37 0.95 16 19 C -0.12 -1.24 5.63 -11.03 -0.06 -1.30 16 20 H 0.11 1.21 7.57 -2.39 -0.02 1.20 16 21 C -0.15 -1.54 9.94 30.36 0.30 -1.24 16 22 C -0.16 -1.74 2.50 -52.30 -0.13 -1.87 16 23 C -0.12 -1.07 6.50 31.41 0.20 -0.87 16 24 C 0.04 0.44 7.65 72.56 0.56 0.99 16 25 O -0.40 -6.63 11.65 -148.98 -1.74 -8.36 16 26 C 0.08 0.96 7.44 72.21 0.54 1.50 16 27 C 0.00 0.01 7.38 86.41 0.64 0.65 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.42 6.44 -2.39 -0.02 1.40 16 30 H 0.11 1.89 6.07 -2.38 -0.01 1.88 16 31 H 0.11 3.95 7.40 -2.39 -0.02 3.94 16 32 H 0.11 3.93 8.11 -2.39 -0.02 3.91 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.09 2.36 7.22 -2.39 -0.02 2.35 16 35 H 0.10 1.16 7.78 -2.39 -0.02 1.14 16 36 H 0.09 1.47 7.89 -2.38 -0.02 1.45 16 37 H 0.08 0.86 7.88 -2.39 -0.02 0.84 16 38 H 0.05 0.51 6.97 -2.39 -0.02 0.49 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.98 8.04 -2.39 -0.02 0.96 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 0.64 6.90 -2.39 -0.02 0.63 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 1.06 8.12 -2.38 -0.02 1.04 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.10 1.25 7.80 -2.39 -0.02 1.24 16 Total: -1.00 -75.86 395.29 0.22 -75.64 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.94 Total: 16.46 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 6.47 Total: -8.49 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -6.28 Total: -84.74 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.78 Total: -34.89 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -75.86 0.22 -75.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723734708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.578 kcal (2) G-P(sol) polarization free energy of solvation -75.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds