Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00061 * 2 1 4 4 O 1.21278 * 119.99748 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00209 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47181 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99825 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00405 * 0.02562 * 7 6 5 9 9 C 1.38803 * 119.99855 * 179.72221 * 7 6 5 10 10 N 1.31634 * 119.99756 * 0.27728 * 9 7 6 11 11 Si 1.86803 * 120.00005 * 180.27923 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99753 * 11 9 7 13 13 H 1.48497 * 109.46782 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00030 * 11 9 7 15 15 C 1.46499 * 119.99660 * 179.97438 * 2 1 3 16 16 C 1.53934 * 113.73354 * 38.77110 * 15 2 1 17 17 N 1.48195 * 86.09928 * 221.95528 * 16 15 2 18 18 C 1.46903 * 111.07105 * 137.52195 * 17 16 15 19 19 C 1.52996 * 109.47213 * 70.56368 * 18 17 16 20 20 H 1.09000 * 115.56355 * 29.38566 * 19 18 17 21 21 C 1.53183 * 117.52412 * 243.60810 * 19 18 17 22 22 C 1.52105 * 117.52156 * 175.24504 * 19 18 17 23 23 C 1.53710 * 121.73760 * 218.52714 * 22 19 18 24 24 C 1.54697 * 103.69938 * 143.46211 * 23 22 19 25 25 O 1.44497 * 104.86436 * 23.84445 * 24 23 22 26 26 C 1.44640 * 105.46665 * 320.02507 * 25 24 23 27 27 C 1.47959 * 90.79728 * 24.59658 * 17 16 15 28 28 H 1.09001 * 109.46984 * 89.99794 * 1 2 3 29 29 H 1.08996 * 109.47468 * 210.00631 * 1 2 3 30 30 H 1.09004 * 109.47113 * 330.00253 * 1 2 3 31 31 H 1.08999 * 109.47278 * 59.99800 * 5 3 2 32 32 H 1.09002 * 109.46837 * 300.00183 * 5 3 2 33 33 H 0.97000 * 119.99219 * 179.97438 * 10 9 7 34 34 H 1.09003 * 112.93587 * 170.33546 * 15 2 1 35 35 H 1.09000 * 113.75669 * 336.23275 * 16 15 2 36 36 H 1.08998 * 113.75864 * 107.60571 * 16 15 2 37 37 H 1.08995 * 109.46638 * 190.56326 * 18 17 16 38 38 H 1.09000 * 109.46566 * 310.56525 * 18 17 16 39 39 H 1.09003 * 117.51645 * 0.02562 * 21 19 18 40 40 H 1.08994 * 117.52371 * 145.09837 * 21 19 18 41 41 H 1.09000 * 110.58332 * 262.01971 * 23 22 19 42 42 H 1.09002 * 110.58031 * 24.76023 * 23 22 19 43 43 H 1.08996 * 110.36193 * 142.69099 * 24 23 22 44 44 H 1.09002 * 110.36226 * 264.99954 * 24 23 22 45 45 H 1.09005 * 110.41205 * 280.87828 * 26 25 24 46 46 H 1.09002 * 110.41907 * 158.42199 * 26 25 24 47 47 H 1.08997 * 113.75880 * 221.08294 * 27 17 16 48 48 H 1.09001 * 113.85590 * 89.73993 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3763 5.0305 -0.0024 9 6 1.9284 6.5080 0.0025 10 7 3.2268 6.7246 0.0027 11 14 0.7410 7.9501 0.0089 12 1 -0.1135 7.8822 1.2214 13 1 1.5072 9.2221 0.0130 14 1 -0.1147 7.8921 -1.2035 15 6 2.1974 -1.2688 0.0006 16 6 1.5557 -2.3550 -0.8814 17 7 1.8636 -3.2921 0.2246 18 6 0.7405 -4.2065 0.4703 19 6 0.6253 -5.1963 -0.6907 20 1 1.5590 -5.4342 -1.2003 21 6 -0.6509 -5.1497 -1.5366 22 6 -0.4131 -6.3013 -0.5718 23 6 -0.1356 -7.7287 -1.0700 24 6 -0.8495 -8.6248 -0.0306 25 8 -1.8734 -7.7826 0.5440 26 6 -1.2612 -6.4811 0.6971 27 6 1.8623 -2.1771 1.1973 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7584 2.5303 0.8891 32 1 0.7591 2.5298 -0.8908 33 1 3.5669 7.6330 0.0059 34 1 3.2668 -1.1420 -0.1680 35 1 0.4885 -2.2101 -1.0498 36 1 2.1084 -2.5594 -1.7983 37 1 0.9129 -4.7527 1.3977 38 1 -0.1831 -3.6335 0.5523 39 1 -1.4079 -4.4136 -1.2660 40 1 -0.5565 -5.3569 -2.6025 41 1 -0.5620 -7.8780 -2.0619 42 1 0.9358 -7.9293 -1.0806 43 1 -1.2995 -9.4886 -0.5200 44 1 -0.1475 -8.9467 0.7386 45 1 -0.6278 -6.4609 1.5840 46 1 -2.0253 -5.7061 0.7568 47 1 2.6595 -2.2396 1.9380 48 1 0.8859 -1.9789 1.6393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723734709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -10.294081 kcal Electronic energy + Delta-G solvation = -26768.004172 eV Core-core repulsion = 22951.515305 eV Total energy + Delta-G solvation = -3816.488867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97921 -40.17810 -38.65337 -36.79345 -34.78738 -32.44248 -31.36247 -30.26765 -28.78457 -27.66167 -26.98023 -26.35050 -25.52810 -24.41557 -23.14012 -21.48685 -20.34470 -19.67604 -19.02109 -17.72966 -17.11342 -16.78338 -16.49361 -16.27515 -15.91754 -15.63702 -15.32537 -15.01126 -14.81864 -14.46687 -14.12843 -14.00035 -13.65517 -13.32303 -13.24710 -12.96355 -12.91121 -12.79163 -12.63545 -12.49097 -12.31123 -12.05041 -11.94179 -11.78842 -11.41746 -11.24607 -11.07122 -11.05118 -11.01555 -10.77687 -10.50935 -10.20291 -10.07614 -9.83449 -9.48319 -9.13985 -9.07322 -8.59478 -8.25097 -6.52022 -6.22882 -3.93856 2.80562 2.96512 3.07817 3.22156 3.23046 3.27664 3.47118 3.52917 3.69921 3.87488 4.13200 4.18777 4.28791 4.37175 4.38858 4.58442 4.63213 4.73499 4.84703 4.88515 4.95699 4.99079 5.02999 5.09865 5.12071 5.13382 5.21536 5.22953 5.23857 5.28656 5.31570 5.36968 5.44760 5.45732 5.55150 5.56285 5.57342 5.61741 5.76509 5.86058 5.94615 5.96059 6.09658 6.28423 6.54099 6.68889 7.45894 7.57709 8.33362 8.49556 9.22183 10.84447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.001740 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.132605 B =16085.023843 C =16541.066142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.535 3.465 4 O -0.512 6.512 5 C -0.151 4.151 6 S -0.061 6.061 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.122 3.878 16 C -0.005 4.005 17 N -0.473 5.473 18 C 0.054 3.946 19 C -0.122 4.122 20 H 0.116 0.884 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.119 4.119 24 C 0.046 3.954 25 O -0.374 6.374 26 C 0.082 3.918 27 C -0.011 4.011 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.269 0.731 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 -28.837 -0.756 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.352 5.352 3 C 0.323 3.677 4 O -0.386 6.386 5 C -0.301 4.301 6 S 0.166 5.834 7 C -0.685 4.685 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.017 3.983 16 C -0.135 4.135 17 N -0.195 5.195 18 C -0.075 4.075 19 C -0.141 4.141 20 H 0.134 0.866 21 C -0.195 4.195 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.030 4.030 25 O -0.293 6.293 26 C 0.005 3.995 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.659 -29.199 -0.732 30.196 hybrid contribution -2.884 1.333 -0.015 3.178 sum -10.543 -27.866 -0.747 29.803 Atomic orbital electron populations 1.21737 0.79946 1.02965 1.01812 1.47884 1.06547 1.05357 1.75427 1.20394 0.87972 0.84538 0.74784 1.90697 1.13736 1.86739 1.47423 1.23569 1.04596 0.97217 1.04723 1.85411 1.07976 0.93295 1.96710 1.22816 0.94260 0.92227 1.59173 0.91001 1.24990 0.95672 0.98357 0.94508 1.70010 1.11739 1.21783 1.46680 0.86229 0.80191 0.80323 0.78784 1.19949 1.20785 1.19946 1.22937 0.99261 0.81445 0.94621 1.24464 1.00584 0.91408 0.97016 1.68506 1.36923 1.09838 1.04258 1.22174 0.93050 0.94677 0.97613 1.22250 0.94339 0.97830 0.99638 0.86564 1.23116 0.99465 0.99610 0.97299 1.22262 1.02908 0.91699 0.99270 1.22400 1.01538 0.92000 0.99761 1.23432 0.90483 0.94161 0.94956 1.89172 1.35434 1.21025 1.83682 1.22772 0.95726 0.86005 0.94994 1.24478 1.02276 0.90366 0.96997 0.92545 0.91870 0.90296 0.89238 0.89227 0.92110 0.85287 0.90633 0.88752 0.90095 0.93876 0.88528 0.88334 0.90362 0.90063 0.89004 0.92086 0.91639 0.89109 0.88548 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 8.83 59.85 0.53 1.30 16 2 N -0.62 -8.30 3.09 -175.28 -0.54 -8.84 16 3 C 0.54 9.93 7.69 -10.99 -0.08 9.85 16 4 O -0.51 -11.52 15.34 5.56 0.09 -11.44 16 5 C -0.15 -3.00 4.71 36.00 0.17 -2.83 16 6 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 11 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.12 1.45 4.39 -69.63 -0.31 1.15 16 16 C -0.01 -0.05 6.95 -2.63 -0.02 -0.07 16 17 N -0.47 -4.27 6.26 -238.23 -1.49 -5.77 16 18 C 0.05 0.38 4.45 -3.82 -0.02 0.37 16 19 C -0.12 -0.81 5.37 -90.98 -0.49 -1.30 16 20 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.16 -0.98 9.94 -27.09 -0.27 -1.25 16 22 C -0.16 -1.03 2.50 -154.70 -0.39 -1.42 16 23 C -0.12 -0.68 6.88 -25.47 -0.18 -0.85 16 24 C 0.05 0.28 7.65 38.05 0.29 0.57 16 25 O -0.37 -3.31 11.65 -35.23 -0.41 -3.72 16 26 C 0.08 0.57 6.72 37.51 0.25 0.82 16 27 C -0.01 -0.11 7.49 -2.76 -0.02 -0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 6.35 -51.93 -0.33 0.14 16 30 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 32 H 0.09 1.65 8.11 -51.91 -0.42 1.23 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.13 1.84 7.22 -51.93 -0.37 1.46 16 35 H 0.08 0.62 6.48 -51.93 -0.34 0.28 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.57 7.81 -51.93 -0.41 0.17 16 38 H 0.04 0.29 7.44 -51.93 -0.39 -0.10 16 39 H 0.10 0.57 8.04 -51.93 -0.42 0.15 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 46 H 0.09 0.58 8.12 -51.93 -0.42 0.15 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -34.03 396.68 -11.11 -45.14 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.90 Total: -1.80 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.33 Total: -6.64 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -1.30 Total: -39.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.33 Total: -15.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.03 -11.11 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723734709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.844 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds