Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00061 * 2 1 4 4 O 1.21278 * 119.99748 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00209 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47181 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99825 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00405 * 0.02562 * 7 6 5 9 9 C 1.38803 * 119.99855 * 179.72221 * 7 6 5 10 10 N 1.31634 * 119.99756 * 0.27728 * 9 7 6 11 11 Si 1.86803 * 120.00005 * 180.27923 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99753 * 11 9 7 13 13 H 1.48497 * 109.46782 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00030 * 11 9 7 15 15 C 1.46499 * 119.99660 * 179.97438 * 2 1 3 16 16 C 1.53934 * 113.73354 * 38.77110 * 15 2 1 17 17 N 1.48195 * 86.09928 * 221.95528 * 16 15 2 18 18 C 1.46903 * 111.07105 * 137.52195 * 17 16 15 19 19 C 1.52996 * 109.47213 * 70.56368 * 18 17 16 20 20 H 1.09000 * 115.56355 * 29.38566 * 19 18 17 21 21 C 1.53183 * 117.52412 * 243.60810 * 19 18 17 22 22 C 1.52105 * 117.52156 * 175.24504 * 19 18 17 23 23 C 1.53710 * 121.73760 * 218.52714 * 22 19 18 24 24 C 1.54697 * 103.69938 * 143.46211 * 23 22 19 25 25 O 1.44497 * 104.86436 * 23.84445 * 24 23 22 26 26 C 1.44640 * 105.46665 * 320.02507 * 25 24 23 27 27 C 1.47959 * 90.79728 * 24.59658 * 17 16 15 28 28 H 1.09001 * 109.46984 * 89.99794 * 1 2 3 29 29 H 1.08996 * 109.47468 * 210.00631 * 1 2 3 30 30 H 1.09004 * 109.47113 * 330.00253 * 1 2 3 31 31 H 1.08999 * 109.47278 * 59.99800 * 5 3 2 32 32 H 1.09002 * 109.46837 * 300.00183 * 5 3 2 33 33 H 0.97000 * 119.99219 * 179.97438 * 10 9 7 34 34 H 1.09003 * 112.93587 * 170.33546 * 15 2 1 35 35 H 1.09000 * 113.75669 * 336.23275 * 16 15 2 36 36 H 1.08998 * 113.75864 * 107.60571 * 16 15 2 37 37 H 1.08995 * 109.46638 * 190.56326 * 18 17 16 38 38 H 1.09000 * 109.46566 * 310.56525 * 18 17 16 39 39 H 1.09003 * 117.51645 * 0.02562 * 21 19 18 40 40 H 1.08994 * 117.52371 * 145.09837 * 21 19 18 41 41 H 1.09000 * 110.58332 * 262.01971 * 23 22 19 42 42 H 1.09002 * 110.58031 * 24.76023 * 23 22 19 43 43 H 1.08996 * 110.36193 * 142.69099 * 24 23 22 44 44 H 1.09002 * 110.36226 * 264.99954 * 24 23 22 45 45 H 1.09005 * 110.41205 * 280.87828 * 26 25 24 46 46 H 1.09002 * 110.41907 * 158.42199 * 26 25 24 47 47 H 1.08997 * 113.75880 * 221.08294 * 27 17 16 48 48 H 1.09001 * 113.85590 * 89.73993 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3763 5.0305 -0.0024 9 6 1.9284 6.5080 0.0025 10 7 3.2268 6.7246 0.0027 11 14 0.7410 7.9501 0.0089 12 1 -0.1135 7.8822 1.2214 13 1 1.5072 9.2221 0.0130 14 1 -0.1147 7.8921 -1.2035 15 6 2.1974 -1.2688 0.0006 16 6 1.5557 -2.3550 -0.8814 17 7 1.8636 -3.2921 0.2246 18 6 0.7405 -4.2065 0.4703 19 6 0.6253 -5.1963 -0.6907 20 1 1.5590 -5.4342 -1.2003 21 6 -0.6509 -5.1497 -1.5366 22 6 -0.4131 -6.3013 -0.5718 23 6 -0.1356 -7.7287 -1.0700 24 6 -0.8495 -8.6248 -0.0306 25 8 -1.8734 -7.7826 0.5440 26 6 -1.2612 -6.4811 0.6971 27 6 1.8623 -2.1771 1.1973 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7584 2.5303 0.8891 32 1 0.7591 2.5298 -0.8908 33 1 3.5669 7.6330 0.0059 34 1 3.2668 -1.1420 -0.1680 35 1 0.4885 -2.2101 -1.0498 36 1 2.1084 -2.5594 -1.7983 37 1 0.9129 -4.7527 1.3977 38 1 -0.1831 -3.6335 0.5523 39 1 -1.4079 -4.4136 -1.2660 40 1 -0.5565 -5.3569 -2.6025 41 1 -0.5620 -7.8780 -2.0619 42 1 0.9358 -7.9293 -1.0806 43 1 -1.2995 -9.4886 -0.5200 44 1 -0.1475 -8.9467 0.7386 45 1 -0.6278 -6.4609 1.5840 46 1 -2.0253 -5.7061 0.7568 47 1 2.6595 -2.2396 1.9380 48 1 0.8859 -1.9789 1.6393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723734709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -34.381542 kcal Electronic energy + Delta-G solvation = -26769.048683 eV Core-core repulsion = 22951.515305 eV Total energy + Delta-G solvation = -3817.533378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81034 -40.84783 -39.83074 -37.39525 -35.92771 -34.57775 -32.07068 -31.14866 -29.89759 -28.21247 -27.87230 -27.65824 -27.10297 -25.24406 -23.60665 -22.13615 -21.34357 -20.20366 -20.09023 -19.58424 -18.34159 -17.57304 -17.12489 -17.05069 -16.87666 -16.85793 -16.47091 -16.16001 -16.06140 -15.56681 -15.20614 -14.77947 -14.60745 -14.47022 -14.23243 -13.97556 -13.80579 -13.68722 -13.45034 -13.31517 -13.25719 -13.15839 -13.08744 -12.86195 -12.62989 -12.42620 -12.36828 -12.09334 -11.97054 -11.76501 -11.68222 -11.12238 -11.00952 -10.92701 -10.71466 -10.56550 -10.26536 -9.86790 -9.69420 -8.67037 -8.33817 -6.12407 1.25360 1.44376 1.45857 1.53782 1.55496 2.03608 2.28082 2.57969 2.88876 3.00240 3.05302 3.27037 3.38054 3.51529 3.61371 3.72889 3.77151 3.90387 3.93113 4.09795 4.14718 4.19814 4.23661 4.27849 4.36943 4.42223 4.47637 4.51042 4.60407 4.61769 4.68610 4.70791 4.75826 4.78821 4.81906 4.83135 4.89143 4.91181 5.02219 5.03591 5.11731 5.24733 5.26903 5.41964 5.52077 5.80184 5.99697 6.19900 6.24923 7.07195 7.12137 8.75108 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.001740 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.132605 B =16085.023843 C =16541.066142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.532 3.468 4 O -0.565 6.565 5 C -0.123 4.123 6 S -0.155 6.155 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.106 3.894 16 C 0.011 3.989 17 N -0.481 5.481 18 C 0.056 3.944 19 C -0.122 4.122 20 H 0.107 0.893 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.119 4.119 24 C 0.042 3.958 25 O -0.400 6.400 26 C 0.079 3.921 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -29.922 -0.851 32.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C 0.320 3.680 4 O -0.443 6.443 5 C -0.274 4.274 6 S 0.073 5.927 7 C -0.694 4.694 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.186 1.186 15 C 0.002 3.998 16 C -0.118 4.118 17 N -0.204 5.204 18 C -0.072 4.072 19 C -0.141 4.141 20 H 0.125 0.875 21 C -0.191 4.191 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.035 4.035 25 O -0.320 6.320 26 C 0.002 3.998 27 C -0.130 4.130 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.107 0.893 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.874 -30.344 -0.829 32.244 hybrid contribution -1.928 1.477 0.017 2.429 sum -12.802 -28.867 -0.812 31.589 Atomic orbital electron populations 1.22086 0.77078 1.04660 1.03559 1.47845 1.08207 1.04212 1.73136 1.20206 0.87292 0.85540 0.74968 1.90681 1.15814 1.87474 1.50364 1.23383 1.02692 0.94852 1.06466 1.85618 1.12712 0.97367 1.97040 1.23166 0.94642 0.92612 1.58990 0.89813 1.26133 0.97576 1.01693 0.93722 1.70186 1.14141 1.22505 1.47921 0.85008 0.77612 0.75883 0.79522 1.18604 1.20481 1.18619 1.23074 0.97923 0.81273 0.97559 1.24398 1.01328 0.89566 0.96547 1.68505 1.38268 1.09781 1.03829 1.22196 0.92730 0.94441 0.97882 1.22131 0.94227 0.98028 0.99667 0.87457 1.23185 0.99033 0.99482 0.97410 1.22279 1.02628 0.92048 0.99298 1.22415 1.01891 0.91580 0.99751 1.23586 0.90308 0.94307 0.95273 1.89141 1.36770 1.22040 1.84033 1.22860 0.95976 0.85581 0.95350 1.24413 1.02924 0.89572 0.96130 0.90716 0.88713 0.90187 0.87250 0.87374 0.92020 0.88535 0.88616 0.88972 0.89909 0.92549 0.87787 0.88050 0.90055 0.89483 0.87994 0.91506 0.91282 0.88572 0.89307 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 8.83 127.77 1.13 2.20 16 2 N -0.60 -15.22 3.09 -826.85 -2.56 -17.77 16 3 C 0.53 19.78 7.69 87.66 0.67 20.46 16 4 O -0.57 -26.54 15.34 -3.02 -0.05 -26.59 16 5 C -0.12 -4.82 4.71 71.23 0.34 -4.49 16 6 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 7 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 11 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 14 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 15 C 0.11 2.43 4.39 46.55 0.20 2.63 16 16 C 0.01 0.17 6.95 86.36 0.60 0.77 16 17 N -0.48 -7.70 6.26 -907.63 -5.68 -13.38 16 18 C 0.06 0.64 4.45 86.30 0.38 1.02 16 19 C -0.12 -1.34 5.37 -11.03 -0.06 -1.40 16 20 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.15 -1.48 9.94 30.36 0.30 -1.18 16 22 C -0.16 -1.73 2.50 -52.30 -0.13 -1.86 16 23 C -0.12 -1.14 6.88 31.41 0.22 -0.93 16 24 C 0.04 0.45 7.65 72.56 0.56 1.00 16 25 O -0.40 -6.52 11.65 -148.98 -1.74 -8.25 16 26 C 0.08 0.94 6.72 72.21 0.49 1.42 16 27 C 0.00 -0.02 7.49 86.41 0.65 0.63 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.95 6.35 -2.39 -0.02 0.93 16 30 H 0.08 1.30 6.44 -2.38 -0.02 1.29 16 31 H 0.11 3.84 7.40 -2.39 -0.02 3.82 16 32 H 0.11 3.82 8.11 -2.39 -0.02 3.80 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.10 2.88 7.22 -2.39 -0.02 2.86 16 35 H 0.10 1.17 6.48 -2.39 -0.02 1.15 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 0.95 7.81 -2.39 -0.02 0.94 16 38 H 0.06 0.52 7.44 -2.39 -0.02 0.50 16 39 H 0.10 0.86 8.04 -2.39 -0.02 0.84 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.75 7.80 -2.38 -0.02 0.73 16 46 H 0.10 0.99 8.12 -2.39 -0.02 0.97 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 1.27 6.50 -2.39 -0.02 1.26 16 Total: -1.00 -77.12 396.68 -1.47 -78.59 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.94 Total: 16.36 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 6.45 Total: -8.78 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -7.95 Total: -86.77 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.78 Total: -34.84 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -77.12 -1.47 -78.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723734709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.213 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds