Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99949 * 2 1 4 4 O 1.21283 * 120.00002 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00098 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47562 * 180.02562 * 5 3 2 7 7 C 1.76195 * 100.00451 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.38793 * 120.00299 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00523 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99878 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47076 * 89.99770 * 11 9 7 13 13 H 1.48501 * 109.47471 * 209.99592 * 11 9 7 14 14 H 1.48499 * 109.47381 * 329.99750 * 11 9 7 15 15 C 1.46507 * 120.00145 * 179.97438 * 2 1 3 16 16 C 1.53509 * 114.16593 * 59.99752 * 15 2 1 17 17 N 1.47486 * 87.92858 * 220.14027 * 16 15 2 18 18 C 1.46898 * 110.99742 * 138.70822 * 17 16 15 19 19 C 1.53006 * 109.47006 * 169.99744 * 18 17 16 20 20 H 1.09004 * 115.56057 * 29.41885 * 19 18 17 21 21 C 1.53174 * 117.52258 * 243.64383 * 19 18 17 22 22 C 1.52130 * 117.52105 * 175.18756 * 19 18 17 23 23 C 1.54034 * 121.47138 * 356.56842 * 22 19 18 24 24 C 1.55183 * 101.82873 * 195.70409 * 23 22 19 25 25 O 1.44452 * 103.63152 * 36.32763 * 24 23 22 26 26 C 1.43992 * 107.05257 * 320.43337 * 25 24 23 27 27 C 1.47480 * 87.83685 * 27.01266 * 17 16 15 28 28 H 1.09001 * 109.46878 * 270.00020 * 1 2 3 29 29 H 1.08997 * 109.46985 * 30.00326 * 1 2 3 30 30 H 1.09000 * 109.47043 * 150.00656 * 1 2 3 31 31 H 1.09004 * 109.47319 * 300.00609 * 5 3 2 32 32 H 1.09001 * 109.46795 * 60.00299 * 5 3 2 33 33 H 0.96995 * 120.00378 * 180.02562 * 10 9 7 34 34 H 1.08992 * 113.25603 * 192.95217 * 15 2 1 35 35 H 1.09004 * 113.47355 * 105.37711 * 16 15 2 36 36 H 1.08995 * 113.48490 * 334.90362 * 16 15 2 37 37 H 1.09001 * 109.47062 * 49.99998 * 18 17 16 38 38 H 1.08993 * 109.47084 * 289.99446 * 18 17 16 39 39 H 1.09001 * 117.52242 * 0.02562 * 21 19 18 40 40 H 1.09002 * 117.51915 * 145.09839 * 21 19 18 41 41 H 1.09001 * 110.96123 * 313.83545 * 23 22 19 42 42 H 1.09002 * 110.95942 * 77.57187 * 23 22 19 43 43 H 1.09008 * 110.59039 * 277.79411 * 24 23 22 44 44 H 1.08999 * 110.72630 * 154.93023 * 24 23 22 45 45 H 1.08998 * 109.97284 * 266.93754 * 26 25 24 46 46 H 1.08994 * 110.00524 * 145.67976 * 26 25 24 47 47 H 1.09004 * 113.47382 * 87.75609 * 27 17 16 48 48 H 1.08994 * 113.47564 * 218.22200 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4414 5.2082 -0.0010 8 1 0.3761 5.0305 -0.0002 9 6 1.9281 6.5080 -0.0009 10 7 1.0914 7.5242 -0.0002 11 14 3.7706 6.8155 -0.0015 12 1 4.2583 6.8973 -1.4018 13 1 4.0597 8.0927 0.6986 14 1 4.4588 5.7008 0.6979 15 6 2.1976 -1.2688 0.0006 16 6 1.9053 -2.1637 -1.2119 17 7 1.9166 -3.3186 -0.2947 18 6 0.8362 -4.2594 -0.6195 19 6 1.0272 -5.5507 0.1787 20 1 1.5251 -5.4389 1.1419 21 6 1.2908 -6.8375 -0.6093 22 6 -0.0557 -6.6133 0.0663 23 6 -1.3369 -6.3722 -0.7541 24 6 -2.2622 -7.5068 -0.2398 25 8 -1.9321 -7.6057 1.1630 26 6 -0.5055 -7.4447 1.2735 27 6 1.5089 -2.3966 0.7817 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 0.7590 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.4315 8.4326 -0.0005 34 1 3.2579 -1.1534 0.2250 35 1 2.7136 -2.1819 -1.9430 36 1 0.9311 -1.9780 -1.6641 37 1 0.8589 -4.4847 -1.6858 38 1 -0.1241 -3.8124 -0.3629 39 1 1.3285 -6.7638 -1.6961 40 1 1.9621 -7.5720 -0.1643 41 1 -1.7620 -5.3928 -0.5345 42 1 -1.1428 -6.4809 -1.8212 43 1 -2.0418 -8.4432 -0.7524 44 1 -3.3106 -7.2380 -0.3689 45 1 -0.0183 -8.4196 1.2564 46 1 -0.2597 -6.9220 2.1979 47 1 0.4288 -2.2730 0.8615 48 1 1.9811 -2.6122 1.7401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723734710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -7.076054 kcal Electronic energy + Delta-G solvation = -26709.481488 eV Core-core repulsion = 22893.132165 eV Total energy + Delta-G solvation = -3816.349323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11149 -40.26185 -38.81812 -36.87322 -34.92420 -32.45597 -31.13898 -30.59581 -29.08811 -27.60516 -26.95793 -26.28755 -25.64776 -24.52296 -23.16030 -21.61057 -20.44032 -19.71243 -19.08317 -17.73468 -17.23945 -16.72918 -16.69401 -16.28034 -16.02776 -15.58789 -15.44417 -15.03129 -14.77530 -14.74937 -14.26073 -13.79234 -13.58501 -13.52677 -13.26128 -13.06860 -13.01820 -12.83430 -12.79998 -12.58667 -12.39318 -12.14784 -12.01270 -11.79220 -11.40668 -11.27880 -11.24771 -11.06661 -11.01416 -10.62043 -10.47103 -10.34899 -9.99209 -9.87444 -9.59300 -9.26996 -9.01981 -8.67351 -8.51404 -6.94256 -6.30588 -4.02677 2.60792 2.83409 3.03180 3.16581 3.32055 3.43362 3.49483 3.52807 3.63807 3.91405 4.14873 4.21398 4.27377 4.31707 4.39314 4.49053 4.62530 4.66811 4.72477 4.82870 4.87257 4.95070 4.96881 5.02459 5.07615 5.08545 5.11567 5.17908 5.19422 5.22798 5.28275 5.29588 5.33057 5.42298 5.45488 5.50496 5.52465 5.55803 5.73507 5.73617 5.86133 5.91362 5.96663 6.34557 6.43147 6.64694 7.35063 7.92298 8.35997 8.39470 9.15582 10.78533 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.001775 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.512828 B =15771.941363 C =16284.869885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.534 3.466 4 O -0.514 6.514 5 C -0.121 4.121 6 S -0.143 6.143 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.125 3.875 16 C -0.017 4.017 17 N -0.463 5.463 18 C 0.053 3.947 19 C -0.114 4.114 20 H 0.112 0.888 21 C -0.153 4.153 22 C -0.167 4.167 23 C -0.120 4.120 24 C 0.049 3.951 25 O -0.378 6.378 26 C 0.085 3.915 27 C -0.014 4.014 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -31.283 -1.579 31.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.272 4.272 6 S 0.084 5.916 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.516 5.516 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.020 3.980 16 C -0.147 4.147 17 N -0.185 5.185 18 C -0.075 4.075 19 C -0.133 4.133 20 H 0.130 0.870 21 C -0.190 4.190 22 C -0.168 4.168 23 C -0.157 4.157 24 C -0.027 4.027 25 O -0.297 6.297 26 C 0.008 3.992 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.605 -31.555 -1.342 31.788 hybrid contribution -1.570 0.756 -0.377 1.783 sum -5.175 -30.799 -1.718 31.278 Atomic orbital electron populations 1.21790 0.79664 1.03161 1.02085 1.47776 1.06660 1.05199 1.75173 1.20353 0.87953 0.84558 0.74918 1.90698 1.13699 1.86780 1.47606 1.23323 1.03119 0.95096 1.05632 1.84808 1.11898 0.97499 1.97414 1.22300 0.94848 0.90892 1.58858 0.89397 1.24711 0.98557 0.94872 0.93156 1.69935 1.34807 0.98885 1.48014 0.86736 0.85334 0.79847 0.79944 1.19204 1.19927 1.15907 1.22576 0.98844 0.81246 0.95338 1.24373 1.02351 0.90309 0.97630 1.68820 1.37039 1.07554 1.05089 1.22214 0.93232 0.92710 0.99385 1.22133 1.00471 0.89430 1.01266 0.86993 1.23107 0.96565 0.99782 0.99523 1.22372 0.91451 1.03460 0.99546 1.22578 0.93542 0.99942 0.99672 1.23550 0.99754 0.97445 0.81991 1.88935 1.22036 1.93999 1.24682 1.22516 0.81567 0.98190 0.96905 1.24464 1.00065 0.91863 0.97991 0.92288 0.90130 0.91687 0.88498 0.88431 0.91928 0.84984 0.88908 0.90946 0.90623 0.93098 0.88401 0.88355 0.90110 0.90084 0.92069 0.88864 0.91954 0.89550 0.90584 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 8.92 59.85 0.53 1.24 16 2 N -0.61 -7.84 3.11 -173.62 -0.54 -8.38 16 3 C 0.53 9.40 7.69 -10.99 -0.08 9.31 16 4 O -0.51 -10.93 15.37 5.55 0.09 -10.85 16 5 C -0.12 -2.30 4.71 36.00 0.17 -2.14 16 6 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 10 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 11 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 15 C 0.13 1.42 4.54 -67.72 -0.31 1.11 16 16 C -0.02 -0.16 7.24 -7.54 -0.05 -0.21 16 17 N -0.46 -4.07 6.33 -244.63 -1.55 -5.62 16 18 C 0.05 0.37 4.42 -3.82 -0.02 0.36 16 19 C -0.11 -0.77 5.90 -90.97 -0.54 -1.30 16 20 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 21 C -0.15 -0.89 9.96 -27.00 -0.27 -1.16 16 22 C -0.17 -1.03 2.44 -154.60 -0.38 -1.41 16 23 C -0.12 -0.66 6.22 -25.04 -0.16 -0.82 16 24 C 0.05 0.29 7.73 38.31 0.30 0.59 16 25 O -0.38 -3.32 11.53 -35.23 -0.41 -3.72 16 26 C 0.08 0.59 7.50 37.33 0.28 0.87 16 27 C -0.01 -0.12 7.13 -7.54 -0.05 -0.18 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 30 H 0.06 0.46 6.20 -51.93 -0.32 0.14 16 31 H 0.10 1.70 7.40 -51.91 -0.38 1.32 16 32 H 0.10 1.73 8.11 -51.92 -0.42 1.31 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 1.78 7.28 -51.93 -0.38 1.41 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.60 6.73 -51.93 -0.35 0.25 16 37 H 0.08 0.51 7.82 -51.93 -0.41 0.11 16 38 H 0.05 0.34 6.89 -51.93 -0.36 -0.01 16 39 H 0.10 0.53 8.04 -51.93 -0.42 0.12 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.46 7.71 -51.93 -0.40 0.06 16 42 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 43 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.59 5.87 -51.93 -0.30 0.29 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -33.70 393.76 -10.65 -44.35 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.88 Total: -1.91 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.36 Total: -5.61 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -1.31 Total: -39.58 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.32 Total: -14.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.70 -10.65 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723734710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.279 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds