Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46499 * 109.46913 * 184.99827 * 4 2 1 6 6 C 1.34781 * 119.99784 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47270 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00176 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.38792 * 120.00150 * 180.02562 * 10 9 8 13 13 N 1.31637 * 120.00187 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00217 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47363 * 59.99034 * 14 12 10 16 16 H 1.48498 * 109.47335 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46672 * 299.99009 * 14 12 10 18 18 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 19 19 C 1.46499 * 120.00062 * 60.00143 * 18 2 1 20 20 C 1.34779 * 119.99726 * 239.99897 * 18 2 1 21 21 O 1.21279 * 120.00410 * 359.97438 * 20 18 2 22 22 C 1.50703 * 119.99541 * 179.97438 * 20 18 2 23 23 H 1.08997 * 115.55855 * 34.34787 * 22 20 18 24 24 C 1.53119 * 117.51235 * 248.60649 * 22 20 18 25 25 C 1.52462 * 117.50822 * 180.14428 * 22 20 18 26 26 C 1.53249 * 128.58891 * 349.85073 * 25 22 20 27 27 C 1.53887 * 86.88741 * 194.88668 * 26 25 22 28 28 C 1.53256 * 128.58680 * 225.04650 * 25 22 20 29 29 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 30 30 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 32 32 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 33 33 H 1.08996 * 109.47113 * 65.00108 * 4 2 1 34 34 H 0.96995 * 120.00517 * 0.02562 * 5 4 2 35 35 H 1.09003 * 109.47011 * 300.00102 * 8 6 5 36 36 H 1.09001 * 109.47187 * 60.00121 * 8 6 5 37 37 H 0.96998 * 119.99953 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47391 * 89.99876 * 19 18 2 39 39 H 1.09001 * 109.46813 * 329.99933 * 19 18 2 40 40 H 1.09004 * 109.47041 * 210.00060 * 19 18 2 41 41 H 1.09007 * 117.51268 * 0.02562 * 24 22 20 42 42 H 1.09000 * 117.51236 * 145.06372 * 24 22 20 43 43 H 1.08994 * 113.65142 * 309.38448 * 26 25 22 44 44 H 1.09005 * 113.64862 * 80.38975 * 26 25 22 45 45 H 1.09009 * 113.58832 * 270.39550 * 27 26 25 46 46 H 1.08994 * 113.59430 * 139.57220 * 27 26 25 47 47 H 1.09005 * 113.64722 * 279.61756 * 28 25 22 48 48 H 1.09004 * 113.64343 * 50.61628 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1910 7 8 3.5699 -1.8838 -3.1397 8 6 5.6748 -1.5375 -2.1304 9 16 6.2782 -2.3904 -3.6084 10 6 8.0098 -2.3789 -3.2830 11 1 8.3860 -1.9263 -2.3774 12 6 8.8904 -2.9504 -4.1909 13 7 8.4319 -3.5015 -5.2949 14 14 10.7262 -2.9388 -3.8455 15 1 10.9961 -3.6644 -2.5784 16 1 11.4439 -3.6070 -4.9606 17 1 11.1978 -1.5361 -3.7228 18 7 2.0183 -0.6907 1.1961 19 6 1.6645 -2.0933 1.4278 20 6 2.7932 -0.0358 2.0833 21 8 3.0866 1.1252 1.8912 22 6 3.2951 -0.7462 3.3139 23 1 3.5219 -1.8046 3.1863 24 6 2.7319 -0.3014 4.6665 25 6 4.1646 0.0496 4.2810 26 6 4.7897 1.4351 4.0859 27 6 5.6790 1.1124 5.2997 28 6 5.4694 -0.3746 4.9639 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6054 -1.7197 -1.2954 33 1 1.7516 -0.1581 -2.1370 34 1 3.9824 -0.4627 -0.4318 35 1 6.1098 -0.5391 -2.0845 36 1 5.9629 -2.1005 -1.2426 37 1 9.0473 -3.9013 -5.9292 38 1 2.4158 -2.7378 0.9713 39 1 0.6905 -2.3003 0.9844 40 1 1.6239 -2.2855 2.5000 41 1 1.9981 0.5046 4.6660 42 1 2.5881 -1.0675 5.4285 43 1 5.3439 1.5373 3.1529 44 1 4.0947 2.2567 4.2592 45 1 5.2412 1.4104 6.2525 46 1 6.7108 1.4443 5.1850 47 1 5.3192 -1.0040 5.8412 48 1 6.2127 -0.7763 4.2752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725954692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = -24.008364 kcal Electronic energy + Delta-G solvation = -27498.327697 eV Core-core repulsion = 23681.244134 eV Total energy + Delta-G solvation = -3817.083563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89437 -39.46613 -38.67711 -36.67547 -34.34575 -33.75473 -32.41620 -31.85788 -29.38391 -27.25894 -26.02488 -25.91199 -25.39713 -24.76944 -23.35211 -21.29392 -20.29740 -19.39306 -18.46637 -17.83334 -17.72484 -16.61733 -16.33598 -15.99641 -15.55722 -15.47258 -15.25771 -15.01246 -14.79237 -14.37154 -14.01189 -13.53481 -13.48731 -13.24659 -12.97006 -12.91000 -12.69633 -12.59548 -12.55549 -12.50148 -12.30314 -12.10527 -11.83465 -11.73788 -11.70463 -11.20641 -11.03195 -11.02709 -10.75747 -10.62557 -10.39145 -10.06424 -9.85009 -9.81514 -9.40893 -9.05172 -8.97964 -8.86692 -8.22985 -6.48697 -6.20362 -3.90891 2.21032 2.57868 3.05766 3.11788 3.24565 3.28462 3.32769 3.41594 3.73558 3.94660 4.21872 4.30155 4.32880 4.47200 4.51073 4.60511 4.64233 4.79435 4.83553 4.93241 5.09912 5.14634 5.17191 5.19108 5.21645 5.29542 5.30790 5.34940 5.45480 5.48935 5.53108 5.55950 5.60140 5.65637 5.69181 5.73823 5.86910 5.88202 5.91347 6.04018 6.16346 6.17603 6.22844 6.63021 7.05870 7.60629 7.71989 7.92243 8.36447 8.62614 9.24839 10.87036 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.002922 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.322698 B = 9580.887518 C =11852.166359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.108 0.892 4 C 0.113 3.887 5 N -0.734 5.734 6 C 0.532 3.468 7 O -0.519 6.519 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.608 5.608 19 C 0.075 3.925 20 C 0.545 3.455 21 O -0.533 6.533 22 C -0.181 4.181 23 H 0.124 0.876 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.082 4.082 27 C -0.143 4.143 28 C -0.099 4.099 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.269 0.731 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 6.520 23.011 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.012 4.012 5 N -0.389 5.389 6 C 0.318 3.682 7 O -0.393 6.393 8 C -0.303 4.303 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.342 5.342 19 C -0.068 4.068 20 C 0.333 3.667 21 O -0.409 6.409 22 C -0.202 4.202 23 H 0.142 0.858 24 C -0.159 4.159 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.180 4.180 28 C -0.137 4.137 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.025 6.279 21.127 27.250 hybrid contribution 1.957 0.394 1.562 2.535 sum -14.068 6.673 22.689 27.518 Atomic orbital electron populations 1.22053 0.93696 1.02818 1.03012 1.21390 0.94846 0.98386 0.83371 0.87378 1.21642 0.81352 1.01096 0.97152 1.45923 1.06803 1.61739 1.24432 1.20293 0.89489 0.76766 0.81623 1.90695 1.69874 1.46243 1.32522 1.23523 0.93641 1.05650 1.07530 1.85353 1.04544 1.73056 1.20259 1.22835 0.91592 1.44361 1.09643 0.91005 1.24984 0.99567 0.94538 0.94435 1.70010 1.35508 1.35473 1.09359 0.86228 0.82787 0.78502 0.78020 1.19942 1.20798 1.19912 1.47840 1.50973 1.12780 1.22578 1.21830 1.01590 0.81248 1.02157 1.19732 0.77393 0.86261 0.83270 1.90702 1.57292 1.16695 1.76210 1.22181 1.07385 1.00657 0.89941 0.85768 1.22775 0.95411 1.02861 0.94839 1.22318 0.91833 0.98407 0.99925 1.22329 0.97524 0.93868 0.98196 1.22814 1.00377 0.96140 0.98693 1.22525 0.94549 0.97019 0.99577 0.90778 0.91812 0.91806 0.91314 0.90480 0.76860 0.89302 0.89433 0.92140 0.92102 0.90692 0.90749 0.88190 0.87645 0.89243 0.91383 0.90249 0.91111 0.91264 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.17 37.16 0.34 -0.75 16 2 C 0.12 1.15 2.80 -67.93 -0.19 0.96 16 3 H 0.11 1.19 6.90 -51.93 -0.36 0.83 16 4 C 0.11 1.33 4.97 -4.04 -0.02 1.31 16 5 N -0.73 -10.61 5.39 -60.29 -0.32 -10.94 16 6 C 0.53 10.28 7.85 -10.98 -0.09 10.19 16 7 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 8 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 14 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.61 -5.44 2.24 -173.93 -0.39 -5.83 16 19 C 0.07 0.51 9.17 59.85 0.55 1.05 16 20 C 0.54 5.74 7.16 -10.98 -0.08 5.67 16 21 O -0.53 -7.24 14.47 5.56 0.08 -7.16 16 22 C -0.18 -1.52 4.80 -91.98 -0.44 -1.96 16 23 H 0.12 0.90 7.26 -51.93 -0.38 0.52 16 24 C -0.12 -0.85 10.24 -26.94 -0.28 -1.12 16 25 C -0.12 -1.06 2.88 -154.80 -0.45 -1.51 16 26 C -0.08 -0.78 6.47 -26.14 -0.17 -0.95 16 27 C -0.14 -1.08 8.08 -25.81 -0.21 -1.29 16 28 C -0.10 -0.75 8.10 -26.14 -0.21 -0.97 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 5.36 7.87 -40.82 -0.32 5.04 16 35 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 40 H 0.07 0.38 6.64 -51.93 -0.34 0.04 16 41 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.99 8.05 -51.93 -0.42 0.58 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -35.42 405.06 -9.71 -45.13 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.95 Total: 2.94 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.82 Total: -5.53 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.02 Total: -42.42 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.42 -9.71 -45.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds