Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46499 * 109.46913 * 184.99827 * 4 2 1 6 6 C 1.34781 * 119.99784 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47270 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00176 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.38792 * 120.00150 * 180.02562 * 10 9 8 13 13 N 1.31637 * 120.00187 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00217 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47363 * 59.99034 * 14 12 10 16 16 H 1.48498 * 109.47335 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46672 * 299.99009 * 14 12 10 18 18 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 19 19 C 1.46499 * 120.00062 * 60.00143 * 18 2 1 20 20 C 1.34779 * 119.99726 * 239.99897 * 18 2 1 21 21 O 1.21279 * 120.00410 * 359.97438 * 20 18 2 22 22 C 1.50703 * 119.99541 * 179.97438 * 20 18 2 23 23 H 1.08997 * 115.55855 * 34.34787 * 22 20 18 24 24 C 1.53119 * 117.51235 * 248.60649 * 22 20 18 25 25 C 1.52462 * 117.50822 * 180.14428 * 22 20 18 26 26 C 1.53249 * 128.58891 * 349.85073 * 25 22 20 27 27 C 1.53887 * 86.88741 * 194.88668 * 26 25 22 28 28 C 1.53256 * 128.58680 * 225.04650 * 25 22 20 29 29 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 30 30 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 32 32 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 33 33 H 1.08996 * 109.47113 * 65.00108 * 4 2 1 34 34 H 0.96995 * 120.00517 * 0.02562 * 5 4 2 35 35 H 1.09003 * 109.47011 * 300.00102 * 8 6 5 36 36 H 1.09001 * 109.47187 * 60.00121 * 8 6 5 37 37 H 0.96998 * 119.99953 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47391 * 89.99876 * 19 18 2 39 39 H 1.09001 * 109.46813 * 329.99933 * 19 18 2 40 40 H 1.09004 * 109.47041 * 210.00060 * 19 18 2 41 41 H 1.09007 * 117.51268 * 0.02562 * 24 22 20 42 42 H 1.09000 * 117.51236 * 145.06372 * 24 22 20 43 43 H 1.08994 * 113.65142 * 309.38448 * 26 25 22 44 44 H 1.09005 * 113.64862 * 80.38975 * 26 25 22 45 45 H 1.09009 * 113.58832 * 270.39550 * 27 26 25 46 46 H 1.08994 * 113.59430 * 139.57220 * 27 26 25 47 47 H 1.09005 * 113.64722 * 279.61756 * 28 25 22 48 48 H 1.09004 * 113.64343 * 50.61628 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1910 7 8 3.5699 -1.8838 -3.1397 8 6 5.6748 -1.5375 -2.1304 9 16 6.2782 -2.3904 -3.6084 10 6 8.0098 -2.3789 -3.2830 11 1 8.3860 -1.9263 -2.3774 12 6 8.8904 -2.9504 -4.1909 13 7 8.4319 -3.5015 -5.2949 14 14 10.7262 -2.9388 -3.8455 15 1 10.9961 -3.6644 -2.5784 16 1 11.4439 -3.6070 -4.9606 17 1 11.1978 -1.5361 -3.7228 18 7 2.0183 -0.6907 1.1961 19 6 1.6645 -2.0933 1.4278 20 6 2.7932 -0.0358 2.0833 21 8 3.0866 1.1252 1.8912 22 6 3.2951 -0.7462 3.3139 23 1 3.5219 -1.8046 3.1863 24 6 2.7319 -0.3014 4.6665 25 6 4.1646 0.0496 4.2810 26 6 4.7897 1.4351 4.0859 27 6 5.6790 1.1124 5.2997 28 6 5.4694 -0.3746 4.9639 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6054 -1.7197 -1.2954 33 1 1.7516 -0.1581 -2.1370 34 1 3.9824 -0.4627 -0.4318 35 1 6.1098 -0.5391 -2.0845 36 1 5.9629 -2.1005 -1.2426 37 1 9.0473 -3.9013 -5.9292 38 1 2.4158 -2.7378 0.9713 39 1 0.6905 -2.3003 0.9844 40 1 1.6239 -2.2855 2.5000 41 1 1.9981 0.5046 4.6660 42 1 2.5881 -1.0675 5.4285 43 1 5.3439 1.5373 3.1529 44 1 4.0947 2.2567 4.2592 45 1 5.2412 1.4104 6.2525 46 1 6.7108 1.4443 5.1850 47 1 5.3192 -1.0040 5.8412 48 1 6.2127 -0.7763 4.2752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725954692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -46.225925 kcal Electronic energy + Delta-G solvation = -27499.291123 eV Core-core repulsion = 23681.244134 eV Total energy + Delta-G solvation = -3818.046989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66887 -40.67581 -39.64783 -37.60485 -35.37276 -34.62604 -34.58887 -32.75741 -30.89937 -27.88426 -27.75764 -26.84487 -26.58009 -25.53804 -23.94162 -22.07216 -21.77765 -20.19702 -19.77209 -19.13530 -18.47851 -17.89746 -17.60310 -17.06209 -16.89762 -16.55483 -16.30163 -16.09128 -15.95008 -15.86695 -15.14334 -14.87569 -14.55296 -14.34564 -14.14140 -13.99480 -13.64293 -13.49479 -13.24140 -13.19870 -13.18987 -13.06371 -13.00417 -12.88362 -12.82170 -12.61698 -12.42210 -12.30791 -11.97374 -11.76579 -11.27271 -11.15036 -11.04280 -11.02593 -10.75124 -10.58415 -10.33108 -10.19566 -9.74170 -8.69616 -8.36620 -6.15307 1.23318 1.42529 1.43777 1.44491 1.53891 1.54375 1.86336 2.23408 2.26422 2.77888 2.97291 3.27646 3.30077 3.58741 3.68328 3.76775 3.85298 3.89636 3.95514 3.98410 4.11530 4.18827 4.22117 4.26743 4.43045 4.51221 4.55200 4.61145 4.64742 4.66133 4.77072 4.79461 4.85787 4.90002 4.92348 4.97801 5.04249 5.08951 5.15745 5.22626 5.34089 5.39138 5.40090 5.52211 5.53856 6.17372 6.31562 6.35707 7.04358 7.13052 7.14227 8.72410 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.002922 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.322698 B = 9580.887518 C =11852.166359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.131 3.869 3 H 0.090 0.910 4 C 0.112 3.888 5 N -0.712 5.712 6 C 0.536 3.464 7 O -0.559 6.559 8 C -0.131 4.131 9 S -0.140 6.140 10 C -0.551 4.551 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.264 1.264 18 N -0.605 5.605 19 C 0.070 3.930 20 C 0.538 3.462 21 O -0.571 6.571 22 C -0.187 4.187 23 H 0.140 0.860 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.091 4.091 27 C -0.136 4.136 28 C -0.094 4.094 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.272 0.728 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 6.106 25.736 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.108 0.892 4 C -0.012 4.012 5 N -0.365 5.365 6 C 0.322 3.678 7 O -0.437 6.437 8 C -0.282 4.282 9 S 0.087 5.913 10 C -0.699 4.699 11 H 0.098 0.902 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.188 1.188 18 N -0.338 5.338 19 C -0.072 4.072 20 C 0.328 3.672 21 O -0.451 6.451 22 C -0.207 4.207 23 H 0.158 0.842 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.173 4.173 28 C -0.131 4.131 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.244 5.868 23.895 29.483 hybrid contribution 1.902 0.594 0.754 2.131 sum -14.342 6.461 24.649 29.240 Atomic orbital electron populations 1.22007 0.91295 1.03920 1.03575 1.21279 0.96496 0.97014 0.82487 0.89159 1.21855 0.79178 1.01752 0.98464 1.45734 1.08103 1.59644 1.23020 1.19971 0.88760 0.77034 0.82043 1.90684 1.70281 1.48457 1.34313 1.23365 0.95021 1.05405 1.04452 1.85472 1.05712 1.74805 1.25325 1.23171 0.91817 1.44727 1.10185 0.90202 1.26113 1.05206 0.93667 0.93931 1.70168 1.37540 1.36372 1.10533 0.85017 0.75657 0.79052 0.78362 1.18551 1.20129 1.18837 1.47924 1.50332 1.13618 1.21896 1.22016 1.01966 0.79436 1.03771 1.20177 0.77055 0.85952 0.83992 1.90691 1.58755 1.18445 1.77172 1.22230 1.07927 1.01035 0.89551 0.84250 1.22868 0.93789 1.02938 0.94170 1.22435 0.93159 0.97585 1.00787 1.22267 0.97948 0.94560 0.98083 1.22810 1.00011 0.96266 0.98213 1.22483 0.93685 0.97045 0.99893 0.90068 0.90411 0.91424 0.90722 0.90818 0.76017 0.88120 0.87630 0.91877 0.93098 0.89183 0.88590 0.88714 0.84898 0.91728 0.92585 0.88960 0.91084 0.89450 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.17 71.98 0.66 -1.11 16 2 C 0.13 2.30 2.80 44.99 0.13 2.43 16 3 H 0.09 1.97 6.90 -2.39 -0.02 1.95 16 4 C 0.11 2.52 4.97 86.38 0.43 2.95 16 5 N -0.71 -20.12 5.39 -463.05 -2.49 -22.61 16 6 C 0.54 20.69 7.85 87.66 0.69 21.38 16 7 O -0.56 -26.10 15.86 -3.02 -0.05 -26.14 16 8 C -0.13 -5.51 6.16 71.24 0.44 -5.07 16 9 S -0.14 -7.93 20.57 -56.49 -1.16 -9.10 16 10 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 12 C 0.02 0.91 5.49 84.85 0.47 1.38 16 13 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 14 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 18 N -0.61 -9.87 2.24 -822.57 -1.85 -11.72 16 19 C 0.07 0.77 9.17 127.77 1.17 1.94 16 20 C 0.54 10.83 7.16 87.66 0.63 11.46 16 21 O -0.57 -15.69 14.47 -3.02 -0.04 -15.73 16 22 C -0.19 -2.78 4.80 -11.68 -0.06 -2.84 16 23 H 0.14 1.63 7.26 -2.39 -0.02 1.62 16 24 C -0.10 -1.14 10.24 30.46 0.31 -0.83 16 25 C -0.14 -2.18 2.88 -52.37 -0.15 -2.33 16 26 C -0.09 -1.76 6.47 30.98 0.20 -1.56 16 27 C -0.14 -1.91 8.08 31.19 0.25 -1.66 16 28 C -0.09 -1.25 8.10 30.98 0.25 -1.00 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.72 6.66 -2.39 -0.02 0.70 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.66 7.84 -2.39 -0.02 1.64 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.40 10.59 7.87 -92.71 -0.73 9.86 16 35 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 36 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.74 6.43 -2.39 -0.02 0.72 16 40 H 0.10 0.66 6.64 -2.38 -0.02 0.65 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 42 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 44 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -79.24 405.06 3.01 -76.23 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.23 Total: 25.28 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.06 Total: -6.32 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -4.05 Total: -90.28 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.09 Total: -41.87 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -79.24 3.01 -76.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.005 kcal (2) G-P(sol) polarization free energy of solvation -79.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds