Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46816 * 119.99992 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.99982 * 4 2 1 6 6 C 1.34775 * 119.99885 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00261 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00042 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47367 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00203 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99470 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99992 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00051 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46988 * 60.00074 * 14 12 10 16 16 H 1.48495 * 109.47224 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47071 * 300.00125 * 14 12 10 18 18 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 19 19 C 1.46499 * 120.00225 * 300.00126 * 18 2 1 20 20 C 1.34780 * 119.99546 * 120.00689 * 18 2 1 21 21 O 1.21279 * 120.00031 * 359.97438 * 20 18 2 22 22 C 1.50699 * 119.99563 * 180.02562 * 20 18 2 23 23 H 1.08999 * 115.56559 * 34.33987 * 22 20 18 24 24 C 1.53129 * 117.51044 * 248.60209 * 22 20 18 25 25 C 1.52457 * 117.51140 * 180.14313 * 22 20 18 26 26 C 1.53263 * 128.58799 * 349.84520 * 25 22 20 27 27 C 1.53881 * 86.88724 * 194.89032 * 26 25 22 28 28 C 1.53260 * 128.58595 * 225.04703 * 25 22 20 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 31 31 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 32 32 H 1.09003 * 109.46813 * 294.99541 * 4 2 1 33 33 H 1.08996 * 109.47336 * 54.99775 * 4 2 1 34 34 H 0.96998 * 120.00024 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46856 * 300.00364 * 8 6 5 36 36 H 1.08996 * 109.47186 * 59.99753 * 8 6 5 37 37 H 0.96997 * 119.99911 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47391 * 270.00005 * 19 18 2 39 39 H 1.09001 * 109.46813 * 150.00061 * 19 18 2 40 40 H 1.09004 * 109.47041 * 30.00189 * 19 18 2 41 41 H 1.08994 * 117.51225 * 0.02562 * 24 22 20 42 42 H 1.09002 * 117.50792 * 145.06270 * 24 22 20 43 43 H 1.09004 * 113.64472 * 309.39034 * 26 25 22 44 44 H 1.09002 * 113.64541 * 80.38723 * 26 25 22 45 45 H 1.09001 * 113.58962 * 270.39576 * 27 26 25 46 46 H 1.08994 * 113.59182 * 139.56902 * 27 26 25 47 47 H 1.08997 * 113.64712 * 279.60925 * 28 25 22 48 48 H 1.09003 * 113.64627 * 50.61507 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5699 -1.8825 3.1405 8 6 5.6750 -1.5360 2.1313 9 16 6.2784 -2.3881 3.6098 10 6 8.0102 -2.3741 3.2857 11 1 8.3864 -1.9218 2.3800 12 6 8.8908 -2.9453 4.1938 13 7 8.4322 -3.4980 5.2970 14 14 10.7269 -2.9312 3.8498 15 1 11.1969 -1.5278 3.7285 16 1 11.4446 -3.5994 4.9649 17 1 10.9986 -3.6556 2.5823 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4279 20 6 2.7933 -0.0357 -2.0832 21 8 3.0860 1.1255 -1.8915 22 6 3.2952 -0.7461 -3.3139 23 1 2.6160 -1.4839 -3.7410 24 6 4.7969 -1.0322 -3.4025 25 6 4.1702 0.0476 -4.2775 26 6 4.4565 1.5532 -4.2899 27 6 4.9985 1.3535 -5.7162 28 6 4.0925 0.1128 -5.8068 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7198 1.2953 34 1 3.9823 -0.4629 0.4317 35 1 5.9637 -2.0990 1.2437 36 1 6.1093 -0.5374 2.0852 37 1 9.0476 -3.8968 5.9318 38 1 2.4157 -2.7378 -0.9715 39 1 1.6238 -2.2853 -2.5001 40 1 0.6904 -2.3003 -0.9845 41 1 5.4213 -0.7070 -2.5705 42 1 5.1052 -1.9583 -3.8878 43 1 3.5584 2.1694 -4.2457 44 1 5.2173 1.8595 -3.5719 45 1 6.0626 1.1197 -5.7497 46 1 4.7175 2.1499 -6.4051 47 1 4.5615 -0.7357 -6.3049 48 1 3.0930 0.3280 -6.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725954697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -22.802417 kcal Electronic energy + Delta-G solvation = -27527.478893 eV Core-core repulsion = 23710.447624 eV Total energy + Delta-G solvation = -3817.031269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.89096 -39.46319 -38.68176 -36.67482 -34.33241 -33.76524 -32.41917 -31.85143 -29.38677 -27.26191 -26.03404 -25.93763 -25.40336 -24.76940 -23.33902 -21.27234 -20.31059 -19.37174 -18.46646 -17.84850 -17.76310 -16.66496 -16.29101 -15.86868 -15.69831 -15.48960 -15.31238 -14.87532 -14.79508 -14.39184 -14.02042 -13.54319 -13.47160 -13.18397 -13.03457 -12.92611 -12.73307 -12.63780 -12.58224 -12.49717 -12.19699 -12.12831 -11.82569 -11.74459 -11.67435 -11.20662 -11.03547 -11.02929 -10.76041 -10.62695 -10.37527 -10.06188 -9.84146 -9.81766 -9.41178 -9.05439 -8.97376 -8.86957 -8.23260 -6.49018 -6.20639 -3.91175 2.23255 2.57565 3.05400 3.11532 3.24307 3.28274 3.32486 3.44643 3.73325 3.96261 4.21578 4.29988 4.32617 4.45863 4.49437 4.60476 4.63765 4.76578 4.82598 4.92805 5.09119 5.13576 5.14381 5.16857 5.29112 5.30574 5.35637 5.39903 5.43414 5.49902 5.52500 5.53288 5.61137 5.65891 5.69749 5.73798 5.87318 5.89922 5.91037 6.02774 6.13784 6.15588 6.22418 6.62600 7.06028 7.60317 7.71617 7.92696 8.36140 8.62319 9.24556 10.86762 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.002875 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.661781 B = 9735.129894 C =11909.269616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.108 0.892 4 C 0.113 3.887 5 N -0.734 5.734 6 C 0.532 3.468 7 O -0.519 6.519 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.608 5.608 19 C 0.075 3.925 20 C 0.544 3.456 21 O -0.533 6.533 22 C -0.182 4.182 23 H 0.123 0.877 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.083 4.083 27 C -0.142 4.142 28 C -0.099 4.099 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 6.433 -22.923 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.012 4.012 5 N -0.389 5.389 6 C 0.318 3.682 7 O -0.393 6.393 8 C -0.303 4.303 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.341 5.341 19 C -0.068 4.068 20 C 0.333 3.667 21 O -0.409 6.409 22 C -0.203 4.203 23 H 0.141 0.859 24 C -0.156 4.156 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.180 4.180 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.878 6.192 -21.042 27.078 hybrid contribution 1.918 0.406 -1.581 2.518 sum -13.961 6.598 -22.623 27.390 Atomic orbital electron populations 1.22056 0.93711 1.02812 1.03030 1.21391 0.94844 0.98391 0.83385 0.87371 1.21640 0.81347 1.01097 0.97139 1.45914 1.06801 1.61751 1.24389 1.20295 0.89487 0.76767 0.81625 1.90698 1.69884 1.46249 1.32504 1.23522 0.93635 1.05632 1.07544 1.85361 1.04526 1.73077 1.20253 1.22830 0.91569 1.44367 1.09644 0.91007 1.24986 0.99570 0.94531 0.94450 1.70009 1.35504 1.35451 1.09380 0.86229 0.82789 0.78500 0.78021 1.19913 1.20804 1.19937 1.47849 1.51052 1.12713 1.22522 1.21845 1.01587 0.81310 1.02056 1.19724 0.77501 0.86287 0.83177 1.90702 1.57383 1.16557 1.76298 1.22189 0.95819 1.04613 0.97642 0.85907 1.22824 0.91868 0.99357 1.01526 1.22309 1.01769 0.95320 0.93278 1.22325 1.01165 0.92507 0.95987 1.22814 0.99578 0.97838 0.97757 1.22507 1.00304 0.98646 0.92164 0.91818 0.90771 0.91797 0.90482 0.91305 0.76908 0.89425 0.89323 0.92137 0.91957 0.90884 0.90765 0.87789 0.87451 0.89555 0.91130 0.90044 0.91300 0.91217 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.17 37.16 0.34 -0.76 16 2 C 0.12 1.15 2.80 -67.93 -0.19 0.96 16 3 H 0.11 1.19 6.90 -51.93 -0.36 0.84 16 4 C 0.11 1.32 4.97 -4.04 -0.02 1.30 16 5 N -0.73 -10.53 5.39 -60.29 -0.32 -10.85 16 6 C 0.53 10.22 7.85 -10.98 -0.09 10.13 16 7 O -0.52 -11.88 15.86 5.55 0.09 -11.79 16 8 C -0.15 -3.19 6.16 36.01 0.22 -2.96 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 14 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 N -0.61 -5.44 2.24 -173.93 -0.39 -5.83 16 19 C 0.07 0.51 9.43 59.85 0.56 1.07 16 20 C 0.54 5.74 7.16 -10.98 -0.08 5.66 16 21 O -0.53 -7.25 14.46 5.56 0.08 -7.17 16 22 C -0.18 -1.53 5.29 -91.98 -0.49 -2.01 16 23 H 0.12 0.79 6.44 -51.93 -0.33 0.45 16 24 C -0.12 -0.99 10.24 -26.94 -0.28 -1.27 16 25 C -0.13 -1.08 2.88 -154.79 -0.45 -1.52 16 26 C -0.08 -0.77 6.47 -26.14 -0.17 -0.94 16 27 C -0.14 -1.03 8.08 -25.81 -0.21 -1.24 16 28 C -0.10 -0.68 8.10 -26.13 -0.21 -0.89 16 29 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 34 H 0.40 5.29 7.87 -40.82 -0.32 4.97 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.37 6.00 -51.93 -0.31 0.05 16 40 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -35.36 404.34 -9.67 -45.03 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.87 Total: 3.00 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.85 Total: -5.58 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.02 Total: -42.29 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.36 -9.67 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.228 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds