Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46816 * 119.99992 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.99982 * 4 2 1 6 6 C 1.34775 * 119.99885 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00261 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00042 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47367 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00203 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99470 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99992 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00051 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46988 * 60.00074 * 14 12 10 16 16 H 1.48495 * 109.47224 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47071 * 300.00125 * 14 12 10 18 18 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 19 19 C 1.46499 * 120.00225 * 300.00126 * 18 2 1 20 20 C 1.34780 * 119.99546 * 120.00689 * 18 2 1 21 21 O 1.21279 * 120.00031 * 359.97438 * 20 18 2 22 22 C 1.50699 * 119.99563 * 180.02562 * 20 18 2 23 23 H 1.08999 * 115.56559 * 34.33987 * 22 20 18 24 24 C 1.53129 * 117.51044 * 248.60209 * 22 20 18 25 25 C 1.52457 * 117.51140 * 180.14313 * 22 20 18 26 26 C 1.53263 * 128.58799 * 349.84520 * 25 22 20 27 27 C 1.53881 * 86.88724 * 194.89032 * 26 25 22 28 28 C 1.53260 * 128.58595 * 225.04703 * 25 22 20 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 31 31 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 32 32 H 1.09003 * 109.46813 * 294.99541 * 4 2 1 33 33 H 1.08996 * 109.47336 * 54.99775 * 4 2 1 34 34 H 0.96998 * 120.00024 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46856 * 300.00364 * 8 6 5 36 36 H 1.08996 * 109.47186 * 59.99753 * 8 6 5 37 37 H 0.96997 * 119.99911 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47391 * 270.00005 * 19 18 2 39 39 H 1.09001 * 109.46813 * 150.00061 * 19 18 2 40 40 H 1.09004 * 109.47041 * 30.00189 * 19 18 2 41 41 H 1.08994 * 117.51225 * 0.02562 * 24 22 20 42 42 H 1.09002 * 117.50792 * 145.06270 * 24 22 20 43 43 H 1.09004 * 113.64472 * 309.39034 * 26 25 22 44 44 H 1.09002 * 113.64541 * 80.38723 * 26 25 22 45 45 H 1.09001 * 113.58962 * 270.39576 * 27 26 25 46 46 H 1.08994 * 113.59182 * 139.56902 * 27 26 25 47 47 H 1.08997 * 113.64712 * 279.60925 * 28 25 22 48 48 H 1.09003 * 113.64627 * 50.61507 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5699 -1.8825 3.1405 8 6 5.6750 -1.5360 2.1313 9 16 6.2784 -2.3881 3.6098 10 6 8.0102 -2.3741 3.2857 11 1 8.3864 -1.9218 2.3800 12 6 8.8908 -2.9453 4.1938 13 7 8.4322 -3.4980 5.2970 14 14 10.7269 -2.9312 3.8498 15 1 11.1969 -1.5278 3.7285 16 1 11.4446 -3.5994 4.9649 17 1 10.9986 -3.6556 2.5823 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4279 20 6 2.7933 -0.0357 -2.0832 21 8 3.0860 1.1255 -1.8915 22 6 3.2952 -0.7461 -3.3139 23 1 2.6160 -1.4839 -3.7410 24 6 4.7969 -1.0322 -3.4025 25 6 4.1702 0.0476 -4.2775 26 6 4.4565 1.5532 -4.2899 27 6 4.9985 1.3535 -5.7162 28 6 4.0925 0.1128 -5.8068 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7198 1.2953 34 1 3.9823 -0.4629 0.4317 35 1 5.9637 -2.0990 1.2437 36 1 6.1093 -0.5374 2.0852 37 1 9.0476 -3.8968 5.9318 38 1 2.4157 -2.7378 -0.9715 39 1 1.6238 -2.2853 -2.5001 40 1 0.6904 -2.3003 -0.9845 41 1 5.4213 -0.7070 -2.5705 42 1 5.1052 -1.9583 -3.8878 43 1 3.5584 2.1694 -4.2457 44 1 5.2173 1.8595 -3.5719 45 1 6.0626 1.1197 -5.7497 46 1 4.7175 2.1499 -6.4051 47 1 4.5615 -0.7357 -6.3049 48 1 3.0930 0.3280 -6.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725954697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -44.973049 kcal Electronic energy + Delta-G solvation = -27528.440284 eV Core-core repulsion = 23710.447624 eV Total energy + Delta-G solvation = -3817.992660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67446 -40.66902 -39.64954 -37.60538 -35.36910 -34.63279 -34.59183 -32.75539 -30.89455 -27.88814 -27.75476 -26.85068 -26.57218 -25.56784 -23.94163 -22.05397 -21.78549 -20.20572 -19.75729 -19.12708 -18.53210 -17.90551 -17.61369 -16.97099 -16.89297 -16.55086 -16.43517 -16.09054 -15.87526 -15.84826 -15.16351 -14.84716 -14.55133 -14.41109 -14.06190 -13.98757 -13.70273 -13.49113 -13.30792 -13.22036 -13.19322 -13.05606 -12.92051 -12.88071 -12.84316 -12.61603 -12.42899 -12.26827 -11.97496 -11.76374 -11.26972 -11.14723 -11.03989 -11.01040 -10.75746 -10.58812 -10.32565 -10.19252 -9.73683 -8.69272 -8.36321 -6.14906 1.23618 1.42710 1.43922 1.44782 1.54347 1.54577 1.85348 2.23537 2.26659 2.78581 2.97623 3.28196 3.30409 3.58900 3.67391 3.73102 3.86927 3.89801 3.96161 3.99182 4.05649 4.18385 4.22313 4.26919 4.43431 4.51100 4.51863 4.59298 4.63170 4.71431 4.77208 4.82339 4.86017 4.90090 4.93420 4.96231 5.05053 5.09553 5.17169 5.22839 5.34209 5.39532 5.40493 5.51646 5.52901 6.17738 6.31476 6.35910 7.04697 7.13383 7.14061 8.72706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.002875 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.661781 B = 9735.129894 C =11909.269616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.131 3.869 3 H 0.090 0.910 4 C 0.112 3.888 5 N -0.712 5.712 6 C 0.536 3.464 7 O -0.560 6.560 8 C -0.131 4.131 9 S -0.141 6.141 10 C -0.550 4.550 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.261 1.261 18 N -0.604 5.604 19 C 0.070 3.930 20 C 0.537 3.463 21 O -0.571 6.571 22 C -0.179 4.179 23 H 0.150 0.850 24 C -0.119 4.119 25 C -0.135 4.135 26 C -0.092 4.092 27 C -0.137 4.137 28 C -0.088 4.088 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.404 0.596 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.272 0.728 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 5.999 -25.641 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.108 0.892 4 C -0.012 4.012 5 N -0.365 5.365 6 C 0.322 3.678 7 O -0.438 6.438 8 C -0.282 4.282 9 S 0.086 5.914 10 C -0.698 4.698 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.185 1.185 18 N -0.337 5.337 19 C -0.072 4.072 20 C 0.327 3.673 21 O -0.451 6.451 22 C -0.199 4.199 23 H 0.167 0.833 24 C -0.156 4.156 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.174 4.174 28 C -0.125 4.125 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.240 0.760 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.078 5.762 -23.803 29.297 hybrid contribution 1.870 0.615 -0.763 2.112 sum -14.208 6.377 -24.566 29.087 Atomic orbital electron populations 1.22011 0.91318 1.03929 1.03578 1.21280 0.96488 0.97022 0.82515 0.89161 1.21850 0.79206 1.01747 0.98424 1.45724 1.08081 1.59661 1.22993 1.19978 0.88774 0.77018 0.82031 1.90687 1.70303 1.48479 1.34309 1.23362 0.94978 1.05399 1.04465 1.85486 1.05713 1.74835 1.25363 1.23164 0.91772 1.44682 1.10173 0.90170 1.26114 1.05205 0.93682 0.93955 1.70168 1.37524 1.36382 1.10561 0.85019 0.75673 0.79044 0.78362 1.18844 1.20180 1.18520 1.47933 1.50384 1.13563 1.21829 1.22040 1.01968 0.79457 1.03757 1.20173 0.77191 0.85993 0.83913 1.90691 1.58815 1.18315 1.77250 1.22263 0.96179 1.04826 0.96660 0.83279 1.22854 0.91585 1.00112 1.01075 1.22438 1.02011 0.94507 0.94625 1.22303 1.00165 0.93400 0.97108 1.22805 0.99857 0.98596 0.96190 1.22486 1.00696 0.98655 0.90624 0.90387 0.90058 0.91451 0.90828 0.90708 0.76039 0.87541 0.88135 0.91893 0.92992 0.88589 0.89228 0.89710 0.85375 0.90866 0.93403 0.89831 0.90384 0.89767 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.17 71.98 0.66 -1.12 16 2 C 0.13 2.29 2.80 44.99 0.13 2.42 16 3 H 0.09 1.97 6.90 -2.39 -0.02 1.95 16 4 C 0.11 2.52 4.97 86.38 0.43 2.95 16 5 N -0.71 -19.95 5.39 -463.04 -2.49 -22.45 16 6 C 0.54 20.57 7.85 87.66 0.69 21.26 16 7 O -0.56 -26.04 15.86 -3.04 -0.05 -26.09 16 8 C -0.13 -5.45 6.16 71.24 0.44 -5.01 16 9 S -0.14 -7.95 20.57 -56.49 -1.16 -9.12 16 10 C -0.55 -31.91 9.50 67.95 0.65 -31.26 16 11 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 12 C 0.02 0.89 5.49 84.86 0.47 1.35 16 13 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 14 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 18 N -0.60 -9.83 2.24 -822.58 -1.85 -11.67 16 19 C 0.07 0.76 9.43 127.77 1.20 1.96 16 20 C 0.54 10.80 7.16 87.66 0.63 11.43 16 21 O -0.57 -15.70 14.46 -3.02 -0.04 -15.75 16 22 C -0.18 -2.65 5.29 -11.68 -0.06 -2.71 16 23 H 0.15 1.38 6.44 -2.39 -0.02 1.37 16 24 C -0.12 -1.81 10.24 30.46 0.31 -1.50 16 25 C -0.14 -2.13 2.88 -52.37 -0.15 -2.28 16 26 C -0.09 -1.75 6.47 30.98 0.20 -1.55 16 27 C -0.14 -1.82 8.08 31.19 0.25 -1.56 16 28 C -0.09 -0.98 8.10 30.98 0.25 -0.73 16 29 H 0.08 0.72 6.66 -2.39 -0.02 0.71 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.65 7.84 -2.39 -0.02 1.64 16 34 H 0.40 10.46 7.87 -92.71 -0.73 9.73 16 35 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 36 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.62 6.00 -2.39 -0.01 0.60 16 40 H 0.09 0.72 6.43 -2.38 -0.02 0.71 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.54 8.05 -2.38 -0.02 1.52 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -79.15 404.34 3.04 -76.12 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.23 Total: 25.25 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 6.09 Total: -6.36 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -4.05 Total: -90.00 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.09 Total: -41.84 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.12 kcal Total: -79.15 3.04 -76.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.143 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds