Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47786 * 2 1 4 4 O 1.42900 * 109.47085 * 239.99445 * 2 1 3 5 5 C 1.42904 * 113.99678 * 90.00001 * 4 2 1 6 6 C 1.50694 * 109.47407 * 179.97438 * 5 4 2 7 7 C 1.38242 * 119.97875 * 269.73496 * 6 5 4 8 8 C 1.38197 * 120.02406 * 179.72745 * 7 6 5 9 9 C 1.38461 * 119.97729 * 0.56279 * 8 7 6 10 10 F 1.35099 * 120.02995 * 179.68909 * 9 8 7 11 11 C 1.38462 * 119.94577 * 359.70278 * 9 8 7 12 12 C 1.38192 * 119.97361 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47268 * 120.00355 * 2 1 3 14 14 O 1.21276 * 120.00499 * 114.99508 * 13 2 1 15 15 N 1.34783 * 119.99567 * 294.99658 * 13 2 1 16 16 C 1.46497 * 119.99638 * 179.97438 * 15 13 2 17 17 C 1.53001 * 109.46900 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.47164 * 60.00014 * 17 16 15 19 19 O 1.42903 * 109.47171 * 299.99748 * 17 16 15 20 20 C 1.53003 * 109.47376 * 180.02562 * 17 16 15 21 21 N 1.46494 * 109.47283 * 185.00021 * 20 17 16 22 22 C 1.36937 * 120.00022 * 179.97438 * 21 20 17 23 23 H 1.08002 * 120.00269 * 0.02562 * 22 21 20 24 24 C 1.38819 * 120.00106 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99813 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99927 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46910 * 90.00368 * 26 24 22 28 28 H 1.48500 * 109.47076 * 210.00564 * 26 24 22 29 29 H 1.48496 * 109.47174 * 330.00806 * 26 24 22 30 30 H 1.08997 * 109.46837 * 59.99883 * 1 2 3 31 31 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46705 * 299.99969 * 1 2 3 33 33 H 1.09001 * 109.47595 * 300.00695 * 5 4 2 34 34 H 1.09002 * 109.46818 * 60.00511 * 5 4 2 35 35 H 1.07995 * 119.98696 * 359.97191 * 7 6 5 36 36 H 1.08003 * 120.01115 * 180.25300 * 8 7 6 37 37 H 1.07998 * 120.00868 * 179.97438 * 11 9 8 38 38 H 1.08007 * 119.98697 * 179.97438 * 12 11 9 39 39 H 0.96996 * 120.00052 * 0.02562 * 15 13 2 40 40 H 1.08999 * 109.47200 * 60.00094 * 16 15 13 41 41 H 1.08997 * 109.47487 * 300.00148 * 16 15 13 42 42 H 0.96700 * 114.00311 * 300.00378 * 19 17 16 43 43 H 1.09005 * 109.46682 * 304.99749 * 20 17 16 44 44 H 1.08999 * 109.47221 * 64.99915 * 20 17 16 45 45 H 0.96999 * 120.00388 * 359.97438 * 21 20 17 46 46 H 0.96997 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.2000 0.1828 -2.2941 6 6 2.7014 -0.6283 -3.4610 7 6 4.0601 -0.7955 -3.6531 8 6 4.5208 -1.5438 -4.7197 9 6 3.6212 -2.1165 -5.6028 10 9 4.0706 -2.8430 -6.6494 11 6 2.2607 -1.9438 -5.4125 12 6 1.8022 -1.1998 -4.3420 13 6 2.0324 -0.7105 1.2304 14 8 2.6529 -1.7468 1.1215 15 7 1.7920 -0.1942 2.4520 16 6 2.2798 -0.8851 3.6482 17 6 1.8747 -0.0952 4.8943 18 1 0.7884 -0.0169 4.9376 19 8 2.4446 1.2139 4.8346 20 6 2.3847 -0.8164 6.1436 21 7 1.8960 -0.1261 7.3397 22 6 2.2264 -0.5943 8.5834 23 1 2.8475 -1.4722 8.6826 24 6 1.7637 0.0602 9.7169 25 7 1.0072 1.1304 9.5961 26 14 2.2138 -0.5789 11.4134 27 1 3.4769 0.0592 11.8637 28 1 1.1259 -0.2525 12.3700 29 1 2.3966 -2.0514 11.3553 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.2538 0.6546 -2.5588 34 1 2.9320 0.9511 -2.0450 35 1 4.7618 -0.3444 -2.9671 36 1 5.5823 -1.6777 -4.8672 37 1 1.5581 -2.3897 -6.1009 38 1 0.7409 -1.0645 -4.1937 39 1 1.2953 0.6344 2.5392 40 1 3.3661 -0.9638 3.6047 41 1 1.8448 -1.8835 3.6939 42 1 3.4108 1.2208 4.7940 43 1 2.0216 -1.8442 6.1434 44 1 3.4747 -0.8161 6.1437 45 1 1.3384 0.6626 7.2507 46 1 0.6836 1.5875 10.3880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732662791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = -142.707775 kcal Electronic energy + Delta-G solvation = -27934.681188 eV Core-core repulsion = 23546.237256 eV Total energy + Delta-G solvation = -4388.443932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.30312 -40.26570 -39.58992 -38.08428 -37.33426 -34.46412 -34.04789 -32.76148 -31.60818 -31.42837 -30.96981 -28.97471 -26.47396 -25.70871 -24.06438 -23.52352 -22.49079 -21.94993 -21.47195 -20.36719 -18.16861 -17.84743 -17.44417 -17.17489 -16.93030 -16.24132 -16.12895 -16.01182 -15.94357 -15.47265 -15.25938 -14.62580 -14.57600 -14.48328 -14.01245 -13.92751 -13.72828 -13.63640 -13.41251 -13.01525 -12.94745 -12.73414 -12.60476 -12.55712 -12.35395 -12.02190 -11.85646 -11.53145 -11.46353 -10.98946 -10.83760 -10.66681 -10.32414 -10.20391 -9.89785 -9.77520 -9.56111 -9.48440 -9.16150 -9.10569 -8.92908 -6.96842 -5.78902 -3.08599 0.58370 0.78448 2.48906 2.58779 3.11867 3.42132 3.47302 3.48998 3.69467 3.81590 4.20519 4.28512 4.42505 4.47741 4.51957 4.55201 4.61761 4.68167 4.73145 4.74610 4.84817 4.91634 5.07937 5.19012 5.21814 5.30942 5.43692 5.50406 5.53181 5.58458 5.65804 5.71990 5.75612 5.76878 5.91226 6.02404 6.15700 6.31581 6.40651 6.48211 6.63277 6.64914 7.39204 7.66283 7.87848 8.11633 8.39184 9.51000 10.07091 10.42758 11.43427 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.001469 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.290081 B =19052.738586 C =19445.818365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.350 6.350 5 C 0.100 3.900 6 C -0.099 4.099 7 C -0.065 4.065 8 C -0.156 4.156 9 C 0.103 3.897 10 F -0.140 7.140 11 C -0.158 4.158 12 C -0.068 4.068 13 C 0.511 3.489 14 O -0.522 6.522 15 N -0.719 5.719 16 C 0.091 3.909 17 C 0.089 3.911 18 H 0.106 0.894 19 O -0.553 6.553 20 C 0.127 3.873 21 N -0.725 5.725 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.405 0.595 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.373 0.627 43 H 0.029 0.971 44 H 0.023 0.977 45 H 0.388 0.612 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 0.357 -32.070 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.024 3.976 6 C -0.100 4.100 7 C -0.084 4.084 8 C -0.175 4.175 9 C 0.084 3.916 10 F -0.118 7.118 11 C -0.176 4.176 12 C -0.086 4.086 13 C 0.296 3.704 14 O -0.397 6.397 15 N -0.373 5.373 16 C -0.033 4.033 17 C 0.030 3.970 18 H 0.123 0.877 19 O -0.358 6.358 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.240 0.760 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.220 0.780 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.223 0.777 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.007 -0.564 -32.036 32.057 hybrid contribution 0.438 0.182 0.817 0.944 sum 1.445 -0.382 -31.219 31.255 Atomic orbital electron populations 1.22245 0.93320 1.04029 1.03324 1.21907 0.95250 0.96338 0.85547 0.89412 1.88144 1.86544 1.33671 1.18454 1.21407 0.99996 0.91617 0.84591 1.19605 0.93542 1.00709 0.96121 1.20969 0.95141 0.96240 0.96007 1.21167 1.00251 1.00252 0.95840 1.17793 0.92821 0.94562 0.86423 1.91510 1.89888 1.75223 1.55214 1.21147 0.93863 1.02208 1.00424 1.20936 1.00076 0.94708 0.92852 1.20325 0.80156 0.85693 0.84272 1.90737 1.39401 1.23080 1.86438 1.45838 1.58112 1.28091 1.05217 1.22112 1.00191 0.96957 0.84089 1.22406 0.99325 0.83079 0.92236 0.87666 1.86570 1.25259 1.27345 1.96643 1.21202 0.96884 0.95347 0.86759 1.42226 1.61446 1.33427 0.99936 1.19227 1.26089 1.08801 0.83471 0.91188 1.24757 1.00331 0.97824 0.97878 1.69672 1.38996 1.20732 1.28415 0.86177 0.77475 0.78122 0.84321 1.21677 1.21715 1.20737 0.91183 0.90943 0.90597 0.91862 0.91911 0.84694 0.84460 0.84510 0.84750 0.76001 0.91000 0.90341 0.77957 0.95326 0.95893 0.77744 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.07 0.62 3.13 -27.88 -0.09 0.53 16 3 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 4 O -0.35 -3.65 9.51 -55.09 -0.52 -4.17 16 5 C 0.10 0.69 5.87 36.00 0.21 0.90 16 6 C -0.10 -0.77 5.51 -104.62 -0.58 -1.34 16 7 C -0.07 -0.50 9.70 -39.60 -0.38 -0.88 16 8 C -0.16 -1.20 10.03 -39.51 -0.40 -1.59 16 9 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 10 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 11 C -0.16 -1.14 10.03 -39.52 -0.40 -1.54 16 12 C -0.07 -0.47 9.70 -39.59 -0.38 -0.85 16 13 C 0.51 6.27 7.18 -10.98 -0.08 6.19 16 14 O -0.52 -8.84 16.51 -14.30 -0.24 -9.08 16 15 N -0.72 -7.74 5.41 -60.30 -0.33 -8.07 16 16 C 0.09 1.14 5.34 -4.04 -0.02 1.12 16 17 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 18 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 19 O -0.55 -8.18 13.03 -35.23 -0.46 -8.64 16 20 C 0.13 2.40 5.90 -4.04 -0.02 2.37 16 21 N -0.73 -18.05 5.55 -59.91 -0.33 -18.38 16 22 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 26 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.06 0.30 7.81 -51.93 -0.41 -0.10 16 34 H 0.06 0.35 8.03 -51.93 -0.42 -0.07 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.40 3.57 8.13 -40.82 -0.33 3.24 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.37 4.56 9.05 45.56 0.41 4.97 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.39 10.32 7.67 -40.82 -0.31 10.00 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -35.70 400.42 -8.56 -44.26 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.05 Total: 10.85 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.40 Total: -1.49 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.07 Total: -53.77 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.22 Total: -21.89 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.70 -8.56 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732662791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.446 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds