Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47786 * 2 1 4 4 O 1.42900 * 109.47085 * 239.99445 * 2 1 3 5 5 C 1.42904 * 113.99678 * 90.00001 * 4 2 1 6 6 C 1.50694 * 109.47407 * 179.97438 * 5 4 2 7 7 C 1.38242 * 119.97875 * 269.73496 * 6 5 4 8 8 C 1.38197 * 120.02406 * 179.72745 * 7 6 5 9 9 C 1.38461 * 119.97729 * 0.56279 * 8 7 6 10 10 F 1.35099 * 120.02995 * 179.68909 * 9 8 7 11 11 C 1.38462 * 119.94577 * 359.70278 * 9 8 7 12 12 C 1.38192 * 119.97361 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47268 * 120.00355 * 2 1 3 14 14 O 1.21276 * 120.00499 * 114.99508 * 13 2 1 15 15 N 1.34783 * 119.99567 * 294.99658 * 13 2 1 16 16 C 1.46497 * 119.99638 * 179.97438 * 15 13 2 17 17 C 1.53001 * 109.46900 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.47164 * 60.00014 * 17 16 15 19 19 O 1.42903 * 109.47171 * 299.99748 * 17 16 15 20 20 C 1.53003 * 109.47376 * 180.02562 * 17 16 15 21 21 N 1.46494 * 109.47283 * 185.00021 * 20 17 16 22 22 C 1.36937 * 120.00022 * 179.97438 * 21 20 17 23 23 H 1.08002 * 120.00269 * 0.02562 * 22 21 20 24 24 C 1.38819 * 120.00106 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99813 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99927 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46910 * 90.00368 * 26 24 22 28 28 H 1.48500 * 109.47076 * 210.00564 * 26 24 22 29 29 H 1.48496 * 109.47174 * 330.00806 * 26 24 22 30 30 H 1.08997 * 109.46837 * 59.99883 * 1 2 3 31 31 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46705 * 299.99969 * 1 2 3 33 33 H 1.09001 * 109.47595 * 300.00695 * 5 4 2 34 34 H 1.09002 * 109.46818 * 60.00511 * 5 4 2 35 35 H 1.07995 * 119.98696 * 359.97191 * 7 6 5 36 36 H 1.08003 * 120.01115 * 180.25300 * 8 7 6 37 37 H 1.07998 * 120.00868 * 179.97438 * 11 9 8 38 38 H 1.08007 * 119.98697 * 179.97438 * 12 11 9 39 39 H 0.96996 * 120.00052 * 0.02562 * 15 13 2 40 40 H 1.08999 * 109.47200 * 60.00094 * 16 15 13 41 41 H 1.08997 * 109.47487 * 300.00148 * 16 15 13 42 42 H 0.96700 * 114.00311 * 300.00378 * 19 17 16 43 43 H 1.09005 * 109.46682 * 304.99749 * 20 17 16 44 44 H 1.08999 * 109.47221 * 64.99915 * 20 17 16 45 45 H 0.96999 * 120.00388 * 359.97438 * 21 20 17 46 46 H 0.96997 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.2000 0.1828 -2.2941 6 6 2.7014 -0.6283 -3.4610 7 6 4.0601 -0.7955 -3.6531 8 6 4.5208 -1.5438 -4.7197 9 6 3.6212 -2.1165 -5.6028 10 9 4.0706 -2.8430 -6.6494 11 6 2.2607 -1.9438 -5.4125 12 6 1.8022 -1.1998 -4.3420 13 6 2.0324 -0.7105 1.2304 14 8 2.6529 -1.7468 1.1215 15 7 1.7920 -0.1942 2.4520 16 6 2.2798 -0.8851 3.6482 17 6 1.8747 -0.0952 4.8943 18 1 0.7884 -0.0169 4.9376 19 8 2.4446 1.2139 4.8346 20 6 2.3847 -0.8164 6.1436 21 7 1.8960 -0.1261 7.3397 22 6 2.2264 -0.5943 8.5834 23 1 2.8475 -1.4722 8.6826 24 6 1.7637 0.0602 9.7169 25 7 1.0072 1.1304 9.5961 26 14 2.2138 -0.5789 11.4134 27 1 3.4769 0.0592 11.8637 28 1 1.1259 -0.2525 12.3700 29 1 2.3966 -2.0514 11.3553 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.2538 0.6546 -2.5588 34 1 2.9320 0.9511 -2.0450 35 1 4.7618 -0.3444 -2.9671 36 1 5.5823 -1.6777 -4.8672 37 1 1.5581 -2.3897 -6.1009 38 1 0.7409 -1.0645 -4.1937 39 1 1.2953 0.6344 2.5392 40 1 3.3661 -0.9638 3.6047 41 1 1.8448 -1.8835 3.6939 42 1 3.4108 1.2208 4.7940 43 1 2.0216 -1.8442 6.1434 44 1 3.4747 -0.8161 6.1437 45 1 1.3384 0.6626 7.2507 46 1 0.6836 1.5875 10.3880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732662791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = -169.149134 kcal Electronic energy + Delta-G solvation = -27935.827771 eV Core-core repulsion = 23546.237256 eV Total energy + Delta-G solvation = -4389.590515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95151 -41.12068 -40.21514 -39.10050 -38.27142 -36.08184 -35.33374 -33.43286 -33.12105 -32.13444 -31.75765 -30.31828 -27.26919 -26.92291 -25.19877 -24.07030 -23.95217 -22.76434 -22.49564 -21.32182 -19.26887 -18.77446 -18.62180 -18.15575 -17.55584 -17.31893 -17.14104 -16.86397 -16.63442 -16.41868 -16.26996 -16.04754 -15.58697 -15.37794 -15.18208 -14.92078 -14.62008 -14.51401 -14.36533 -14.14219 -13.99494 -13.82889 -13.45230 -13.26419 -13.17259 -13.10549 -12.95500 -12.75182 -12.58124 -12.15689 -12.09558 -11.98730 -11.96486 -11.80397 -11.14251 -10.98603 -10.91878 -10.47674 -10.15294 -10.09388 -9.69038 -9.00674 -7.94889 -5.24083 0.00977 0.25153 1.48390 1.49715 1.56848 1.58220 1.81265 2.47261 2.56856 3.08998 3.24893 3.36591 3.48320 3.59700 3.67154 3.71545 3.83533 3.94631 3.98524 4.03337 4.10943 4.19904 4.23035 4.26740 4.41539 4.47394 4.59718 4.62260 4.71743 4.74408 4.84979 4.94622 4.94652 4.97288 5.11919 5.21245 5.21871 5.24545 5.34225 5.48747 5.49667 5.86981 6.06819 6.26486 6.54315 6.80706 7.21457 7.33877 8.08953 8.32288 9.28167 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.001469 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.290081 B =19052.738586 C =19445.818365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.120 0.880 4 O -0.382 6.382 5 C 0.097 3.903 6 C -0.111 4.111 7 C -0.076 4.076 8 C -0.164 4.164 9 C 0.081 3.919 10 F -0.149 7.149 11 C -0.162 4.162 12 C -0.071 4.071 13 C 0.507 3.493 14 O -0.576 6.576 15 N -0.706 5.706 16 C 0.102 3.898 17 C 0.111 3.889 18 H 0.103 0.897 19 O -0.561 6.561 20 C 0.121 3.879 21 N -0.739 5.739 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.270 1.270 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.417 0.583 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.385 0.615 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.377 0.623 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 1.018 -32.735 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.138 0.862 4 O -0.301 6.301 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.095 4.095 8 C -0.183 4.183 9 C 0.062 3.938 10 F -0.128 7.128 11 C -0.180 4.180 12 C -0.089 4.089 13 C 0.294 3.706 14 O -0.454 6.454 15 N -0.360 5.360 16 C -0.023 4.023 17 C 0.051 3.949 18 H 0.121 0.879 19 O -0.368 6.368 20 C -0.006 4.006 21 N -0.382 5.382 22 C -0.382 4.382 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.195 1.195 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.255 0.745 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.209 0.791 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.679 0.101 -32.731 32.738 hybrid contribution 0.582 -0.041 0.956 1.120 sum 1.261 0.060 -31.774 31.799 Atomic orbital electron populations 1.22251 0.91651 1.03377 1.05195 1.21992 0.96292 0.96884 0.83405 0.86205 1.88103 1.86924 1.35504 1.19549 1.21610 1.01758 0.91268 0.83236 1.19885 0.93704 1.00873 0.96632 1.21192 0.95715 0.96386 0.96158 1.21358 1.00884 1.00213 0.95848 1.18074 0.93674 0.95356 0.86715 1.91480 1.90064 1.75581 1.55687 1.21398 0.93696 1.02082 1.00850 1.21227 1.01169 0.94114 0.92366 1.21092 0.79019 0.85077 0.85405 1.90712 1.41968 1.25556 1.87203 1.45705 1.57611 1.28214 1.04467 1.21827 1.00130 0.96367 0.83928 1.22069 0.98958 0.82794 0.91114 0.87889 1.86550 1.26487 1.27198 1.96535 1.21420 0.97132 0.95450 0.86644 1.42393 1.61468 1.33392 1.00921 1.19645 1.25148 1.08545 0.84890 0.90684 1.25564 1.00988 0.98426 1.01564 1.69822 1.40645 1.22197 1.28995 0.85146 0.76846 0.78043 0.79737 1.21384 1.22116 1.19524 0.88738 0.92840 0.89319 0.89280 0.90515 0.83697 0.83464 0.82981 0.82622 0.74520 0.91042 0.90949 0.76580 0.95020 0.95208 0.79061 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.48 71.98 0.68 -1.08 16 2 C 0.08 1.12 3.13 29.85 0.09 1.21 16 3 H 0.12 1.00 7.79 -2.39 -0.02 0.98 16 4 O -0.38 -7.26 9.51 -129.99 -1.24 -8.49 16 5 C 0.10 1.09 5.87 71.23 0.42 1.50 16 6 C -0.11 -1.54 5.51 -19.86 -0.11 -1.65 16 7 C -0.08 -1.11 9.70 22.26 0.22 -0.89 16 8 C -0.16 -2.50 10.03 22.31 0.22 -2.28 16 9 C 0.08 1.36 7.30 22.38 0.16 1.52 16 10 F -0.15 -2.80 17.27 44.97 0.78 -2.02 16 11 C -0.16 -2.22 10.03 22.31 0.22 -1.99 16 12 C -0.07 -0.88 9.70 22.26 0.22 -0.66 16 13 C 0.51 11.76 7.18 87.66 0.63 12.39 16 14 O -0.58 -19.44 16.51 15.98 0.26 -19.18 16 15 N -0.71 -13.95 5.41 -463.06 -2.50 -16.46 16 16 C 0.10 2.44 5.34 86.38 0.46 2.91 16 17 C 0.11 3.08 3.09 30.60 0.09 3.18 16 18 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 19 O -0.56 -15.67 13.03 -148.98 -1.94 -17.61 16 20 C 0.12 4.46 5.90 86.38 0.51 4.97 16 21 N -0.74 -36.55 5.55 -343.45 -1.91 -38.46 16 22 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 25 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 26 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 30 H 0.09 0.56 7.87 -2.39 -0.02 0.54 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.70 7.92 -2.38 -0.02 0.68 16 33 H 0.09 0.52 7.81 -2.39 -0.02 0.50 16 34 H 0.08 0.63 8.03 -2.39 -0.02 0.61 16 35 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.42 6.28 8.13 -92.71 -0.75 5.53 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.39 8.73 9.05 -74.06 -0.67 8.06 16 43 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.38 20.11 7.67 -92.71 -0.71 19.40 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -77.56 400.42 -0.22 -77.78 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.11 Total: 32.68 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.13 Total: 2.43 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.13 Total: -113.35 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.91 Total: -45.28 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.56 -0.22 -77.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732662791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.366 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds