Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46816 * 119.99992 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.99982 * 4 2 1 6 6 C 1.34775 * 119.99885 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00261 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00042 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47367 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00203 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99470 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99992 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00051 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46960 * 90.00044 * 14 12 10 16 16 H 1.48495 * 109.47000 * 210.00156 * 14 12 10 17 17 H 1.48501 * 109.46938 * 330.00381 * 14 12 10 18 18 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 19 19 C 1.46499 * 120.00225 * 300.00126 * 18 2 1 20 20 C 1.34780 * 119.99546 * 120.00689 * 18 2 1 21 21 O 1.21279 * 120.00031 * 359.97438 * 20 18 2 22 22 C 1.50699 * 119.99563 * 180.02562 * 20 18 2 23 23 C 1.53001 * 109.47045 * 179.97438 * 22 20 18 24 24 H 1.09005 * 110.34286 * 304.16155 * 23 22 20 25 25 C 1.51100 * 110.38657 * 66.45129 * 23 22 20 26 26 C 1.30531 * 111.10563 * 135.25244 * 25 23 22 27 27 C 1.51102 * 111.10218 * 359.97438 * 26 25 23 28 28 C 1.54633 * 110.38959 * 181.75430 * 23 22 20 29 29 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 30 30 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 32 32 H 1.09003 * 109.46813 * 294.99541 * 4 2 1 33 33 H 1.08996 * 109.47336 * 54.99775 * 4 2 1 34 34 H 0.96998 * 120.00024 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46856 * 300.00364 * 8 6 5 36 36 H 1.08996 * 109.47186 * 59.99753 * 8 6 5 37 37 H 0.96997 * 119.99911 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47391 * 270.00005 * 19 18 2 39 39 H 1.09001 * 109.46813 * 150.00061 * 19 18 2 40 40 H 1.09004 * 109.47041 * 30.00189 * 19 18 2 41 41 H 1.09004 * 109.47017 * 299.99442 * 22 20 18 42 42 H 1.09002 * 109.47507 * 59.99434 * 22 20 18 43 43 H 1.07998 * 124.44733 * 315.26993 * 25 23 22 44 44 H 1.07996 * 124.44861 * 179.97438 * 26 25 23 45 45 H 1.09001 * 110.38667 * 102.37833 * 27 26 25 46 46 H 1.08995 * 110.38882 * 224.64203 * 27 26 25 47 47 H 1.09000 * 111.03687 * 334.58766 * 28 23 22 48 48 H 1.09004 * 111.03301 * 98.52288 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5699 -1.8825 3.1405 8 6 5.6750 -1.5360 2.1313 9 16 6.2784 -2.3881 3.6098 10 6 8.0102 -2.3741 3.2857 11 1 8.3864 -1.9218 2.3800 12 6 8.8908 -2.9453 4.1938 13 7 8.4322 -3.4980 5.2970 14 14 10.7269 -2.9312 3.8498 15 1 11.3279 -1.6989 4.4204 16 1 11.3563 -4.1232 4.4727 17 1 10.9558 -2.9601 2.3829 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4279 20 6 2.7933 -0.0357 -2.0832 21 8 3.0860 1.1255 -1.8915 22 6 3.2952 -0.7461 -3.3139 23 6 4.1449 0.2156 -4.1470 24 1 3.5746 1.1125 -4.3893 25 6 5.4088 0.5803 -3.4036 26 6 6.4485 0.5296 -4.1911 27 6 6.0514 0.1222 -5.5909 28 6 4.6351 -0.4792 -5.4385 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7198 1.2953 34 1 3.9823 -0.4629 0.4317 35 1 5.9637 -2.0990 1.2437 36 1 6.1093 -0.5374 2.0852 37 1 9.0476 -3.8968 5.9318 38 1 2.4157 -2.7378 -0.9715 39 1 1.6238 -2.2853 -2.5001 40 1 0.6904 -2.3003 -0.9845 41 1 3.9005 -1.6027 -3.0175 42 1 2.4472 -1.0883 -3.9072 43 1 5.4470 0.8474 -2.3579 44 1 7.4598 0.7500 -3.8828 45 1 6.0252 0.9925 -6.2467 46 1 6.7435 -0.6246 -5.9798 47 1 4.6815 -1.5603 -5.3078 48 1 4.0045 -0.2161 -6.2878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734747005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -61.851565 kcal Electronic energy + Delta-G solvation = -27470.096382 eV Core-core repulsion = 23651.371815 eV Total energy + Delta-G solvation = -3818.724567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69620 -39.22638 -38.54486 -36.71099 -34.17803 -32.54910 -32.41657 -31.14660 -29.38582 -29.13334 -27.28371 -26.13372 -25.71160 -25.30549 -21.90590 -20.72394 -20.31498 -19.46442 -18.75929 -17.83736 -17.51599 -16.65086 -16.47726 -16.19219 -15.81949 -15.56005 -15.29918 -14.90199 -14.79436 -14.03110 -13.92772 -13.84647 -13.50680 -13.23460 -12.98359 -12.92555 -12.68100 -12.58172 -12.49952 -12.26786 -12.11250 -12.08967 -12.00722 -11.75773 -11.51536 -11.42234 -11.18480 -11.05479 -11.01421 -11.00961 -10.75296 -9.95392 -9.80962 -9.41626 -9.06934 -9.06121 -8.98710 -8.87639 -8.22964 -6.49036 -6.20845 -3.91242 2.15750 2.36863 2.62038 3.05421 3.11077 3.23240 3.28848 3.33488 3.73417 4.12892 4.21456 4.35026 4.41971 4.53903 4.61520 4.73588 4.77849 4.91493 4.92952 5.08305 5.13459 5.14341 5.16876 5.17513 5.28453 5.28937 5.33259 5.38285 5.47228 5.52537 5.55714 5.61415 5.66322 5.69033 5.73308 5.86156 5.90569 5.92275 6.01351 6.15654 6.20063 6.45470 6.62065 6.75635 7.04734 7.60706 7.71070 7.90417 8.36371 8.61839 9.24601 10.86608 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.003095 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.876791 B = 9045.806057 C =11672.168864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.108 0.892 4 C 0.113 3.887 5 N -0.734 5.734 6 C 0.532 3.468 7 O -0.519 6.519 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.612 5.612 19 C 0.073 3.927 20 C 0.513 3.487 21 O -0.535 6.535 22 C -0.132 4.132 23 C -0.053 4.053 24 H 0.088 0.912 25 C -0.145 4.145 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.122 4.122 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 5.788 -22.766 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.126 0.874 4 C -0.012 4.012 5 N -0.389 5.389 6 C 0.318 3.682 7 O -0.393 6.393 8 C -0.303 4.303 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.347 5.347 19 C -0.070 4.070 20 C 0.302 3.698 21 O -0.411 6.411 22 C -0.172 4.172 23 C -0.071 4.071 24 H 0.106 0.894 25 C -0.162 4.162 26 C -0.197 4.197 27 C -0.136 4.136 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.734 5.536 -20.908 26.746 hybrid contribution 2.080 0.599 -1.538 2.655 sum -13.653 6.135 -22.446 26.979 Atomic orbital electron populations 1.22052 0.93742 1.02778 1.03016 1.21385 0.94828 0.98426 0.83472 0.87359 1.21640 0.81332 1.01081 0.97187 1.45917 1.06804 1.61762 1.24401 1.20299 0.89490 0.76769 0.81629 1.90698 1.69883 1.46242 1.32494 1.23523 0.93627 1.05644 1.07548 1.85358 1.04562 1.73081 1.20245 1.22871 0.91555 1.44275 1.09644 0.90958 1.24986 0.99572 0.94521 0.94465 1.70019 1.35378 1.35534 1.09404 0.86174 0.82943 0.77858 0.78576 1.20248 1.20740 1.19685 1.47970 1.51185 1.12741 1.22769 1.21843 1.01756 0.81341 1.02062 1.20802 0.77554 0.87004 0.84463 1.90716 1.57127 1.16785 1.76474 1.21776 1.00888 0.99926 0.94569 1.20822 0.95092 0.97735 0.93469 0.89419 1.23304 0.93723 0.99520 0.99697 1.23284 0.98908 1.02118 0.95395 1.21331 0.96245 1.00313 0.95754 1.22556 0.96317 1.00197 0.96908 0.91803 0.91844 0.90815 0.90519 0.91331 0.76896 0.89424 0.89315 0.92198 0.91972 0.90875 0.90649 0.88487 0.88803 0.85582 0.85932 0.90961 0.91271 0.90842 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.17 37.16 0.34 -0.71 16 2 C 0.12 1.11 2.80 -67.93 -0.19 0.92 16 3 H 0.11 1.17 6.90 -51.93 -0.36 0.81 16 4 C 0.11 1.30 4.97 -4.04 -0.02 1.28 16 5 N -0.73 -10.39 5.39 -60.29 -0.32 -10.72 16 6 C 0.53 10.17 7.85 -10.98 -0.09 10.08 16 7 O -0.52 -11.83 15.86 5.55 0.09 -11.74 16 8 C -0.15 -3.19 6.16 36.01 0.22 -2.96 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 14 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 N -0.61 -5.11 2.24 -173.93 -0.39 -5.50 16 19 C 0.07 0.45 9.40 59.85 0.56 1.01 16 20 C 0.51 4.98 7.14 -10.98 -0.08 4.90 16 21 O -0.53 -6.97 14.01 5.56 0.08 -6.89 16 22 C -0.13 -0.95 3.67 -27.88 -0.10 -1.05 16 23 C -0.05 -0.44 2.54 -90.72 -0.23 -0.67 16 24 H 0.09 0.83 8.01 -51.93 -0.42 0.41 16 25 C -0.14 -1.51 9.19 -35.70 -0.33 -1.84 16 26 C -0.18 -1.72 10.78 -35.70 -0.38 -2.11 16 27 C -0.10 -0.76 6.81 -26.84 -0.18 -0.94 16 28 C -0.12 -0.82 6.71 -25.02 -0.17 -0.99 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 6.66 -51.93 -0.35 0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 34 H 0.40 5.18 7.87 -40.82 -0.32 4.86 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 40 H 0.07 0.39 6.43 -51.93 -0.33 0.05 16 41 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.09 0.46 7.40 -51.93 -0.38 0.08 16 43 H 0.13 1.52 7.31 -52.49 -0.38 1.13 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -35.66 402.68 -9.32 -44.98 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.89 Total: 2.88 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.45 Total: -6.22 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.02 Total: -41.82 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.66 -9.32 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734747005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.876 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds